Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os12g0417000 | OGI:12012750 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr12:12873432-12876080 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CATAGATGGAATAATTGTTGAAGCAAACAAACCTAAGACGTAAGCATTTTTGTATATATATTATTGTTGCTACTCATTTCTGCTTGTACACCAAGTAATCTTAGTACTTTTCCTGTTCCTTCTACTGTACTGATGTTCGTTGAAGCACTCTTTACTGGTTGGTAATTTTTTTTATCATGGCGCAGGAAAAACAATGGAAAAGGCAAGAGGAAGGTCTAAAGAAAAGGTTATCAATGGAATGGCAGTTGGAAAGAATAAGGAAAACACTCTTACTGATTATGAAATACGTCGCAAAGGTGTCATAGCAGCAAACAATGAGATGTTACAATCTCTAAACCTCCCGCCCATGGGCAGCAATACGCATGTTCAACAACGACCCAAGAAAATACCTAAGGTTATGTGTCTTGAACTTCTGGTTCTAATTTTTTAGTATCCAATATGTACCTTTTATTTGACATCAAACTTCTGTTAGGTAACTGATGGTAGAAACATGGTGCCATGTGGAGATCATAACTTGCGGTCTAGGTCAAGAAATAACCTAGAGGAAAATGTAGATGAAAATGTTGGCGATGATCCTGAATACCAACTAGAAGAAGATGCCATGGATGACAATGAAGGTATTAAAGAAACTGAGCTGTGCTATTTATGGCAATTCAGATCGTGCTAGTGTTATACATGCTTATGCTTGTTTCTGTTTTGTTCAGTAGATGTAGAAGAAACTCTTGAACTTGAAAAAGTTCAGCAGAAAAAGAAGGAAGGAAGGGGTATCACTCAAAAGCTCAACATAATTTCAAGGGTGGGTGAAGCTAAAATCAAAATTACTCTCAACGAATTTGGTCAGCCGGTGGGGCTTGATTCTGAGGAATTTGCCACTACTTTTGGGACATTTGTGAGAAAGAAAATACCTGTTGCATGTGGTGATTGGAGAGATGTTGACGTCAAAGACAAGCTGAAAGTATGGGAAGATGTACAGGTAGATTGACTGTTATTTGTCTTGTTCCATTAATTTTGTATATCCTACTAATTCAATATTTTTTATATTAAAACAGAAACATTATGAGATCAATGAATATGGTTTACATTTTGTGTTGGAGACATCACATATGATATGGAAGGATTATAAGGCTGATTTGAAGAAGAAACATTTTGATGCAAATCTGACTGATGAGGAACTTATGGACAGACGTGACTTAAGAGTCAACGAGGCACAATGGAAGTGGCTTATTAACCATTGGAGATCTCCAGAAGCTGTGGTAAGGCATCCAGTGTTATTTGCTGTACTTTACATTAAAATAGCCTACATATTGTGTTCATAACTGTTGTGTAGGCCCGCTCCATAAGAGGCAAGGCAAATCGCGGAATGTTGCGCATGTTACATACAGCTGGTAGCAAGAGCCACGCTCGTGTTGGCCATGACATGGTAACATAAGTATATCATGTTAGTTCATTAGATGTATGACTTACAAAGCTTTGTGTACTCTAACTTCTTGTTTTAGGGTGTGAAAACTGGGCGTCCTCCTAGAAGGGATGAAGTCTTTGTTGAAACGCACAAACGAAAAAATGGAGAAATTATTCCAGAGGCTGCAGAAACAGTTGTATGCTTTCATTTTCTAAAACAGATTTCATGTGTAGAATACTACTTGCTAATATGTTTTTCCAACATTATAGGAAATGCTAAAAGAGGCTGCAGAAGTTAACCCAGAGTTGAAGAACAAAACAATCCAGGAGGGCGATTTGTATTCACGTGTTTGTGGAACCAAGGAACCAAGAGGCCGTGTTCGTGTTTTAGGAAAGGGACCAACTCCTCAGGATGTGGGCACACCAGGAACACGTAGCAGAATGCCAACAAGACTTCAGCTAGAAATAGAATCTCATCGACAGACCAAACAAGAAGTTGTATGTCTGAATAAACGCATGGACGACATGCAACAACGTTTTAACATAATGGAGCATATGGTTATGTCTCAAGGTGTGCAGAATATAGAAACAAGTTCCCATCATGCTTCTAATTCTCGACATGCTGAGGTAAAGTGCCTTGCCTATCTGGATTTATCTATTTGATTTCATGTTATTTGGAAATATGTGTTGTATTTGTTGCCTACAAAAGCTTATGTCATTATGTTGATTTGGTTGTAGAGCCCAAGGAGTCCAGTACTTGAAGAGCTGCATCCTAATGAGCCTACCAATAGGCACTTGCTGGAGGAGCCTCATGCTGAGCCTACCAGTAGGCACTTGGATAATATCCTATCGGGTGATGACTTTATTATCCGCAAAAAAGCTATAACGCCAAGGGTGCCCTCAAGAAACACAGCCACAGGAAGCCATGAAGCCACCATTGCTGAAGGAGAAAATCTTGTAATTTTTCTCATCCTTCTAAACCTAGCTTTTATTTAAGTCATTTAAATGCTATTGGTATTAATTGGTCAACATACTGAACTGAATTGTGTCCTTTAGGTTGGTAAAGATGTTATCTTATATGCTGTCTTGAGATCTGACACCCCTGTGGCTAAAGCAACAATTGTATCAATTCATCCAAGTTCCTTGGTGGGAGGTCAACCTCTAGGTGTTGAATTCTATGAAGTTGTTGTCAATGTCGTGCTTAAAAGAGATGCATTGCTTCCTCGTCCATATGATGATATGCAAACTATG
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| CDS seq | TTGTTGAAGCAAACAAACCTAAGACGAAAAACAATGGAAAAGGCAAGAGGAAGGTCTAAAGAAAAGGTTATCAATGGAATGGCAGTTGGAAAGAATAAGGAAAACACTCTTACTGATTATGAAATACGTCGCAAAGGTGTCATAGCAGCAAACAATGAGATGTTACAATCTCTAAACCTCCCGCCCATGGGCAGCAATACGCATGTTCAACAACGACCCAAGAAAATACCTAAGGTAACTGATGGTAGAAACATGGTGCCATGTGGAGATCATAACTTGCGGTCTAGGTCAAGAAATAACCTAGAGGAAAATGTAGATGAAAATGTTGGCGATGATCCTGAATACCAACTAGAAGAAGATGCCATGGATGACAATGAAGTAGATGTAGAAGAAACTCTTGAACTTGAAAAAGTTCAGCAGAAAAAGAAGGAAGGAAGGGGTATCACTCAAAAGCTCAACATAATTTCAAGGGTGGGTGAAGCTAAAATCAAAATTACTCTCAACGAATTTGGTCAGCCGGTGGGGCTTGATTCTGAGGAATTTGCCACTACTTTTGGGACATTTGTGAGAAAGAAAATACCTGTTGCATGTGGTGATTGGAGAGATGTTGACGTCAAAGACAAGCTGAAAGTATGGGAAGATGTACAGAAACATTATGAGATCAATGAATATGGTTTACATTTTGTGTTGGAGACATCACATATGATATGGAAGGATTATAAGGCTGATTTGAAGAAGAAACATTTTGATGCAAATCTGACTGATGAGGAACTTATGGACAGACGTGACTTAAGAGTCAACGAGGCACAATGGAAGTGGCTTATTAACCATTGGAGATCTCCAGAAGCTGTGGCCCGCTCCATAAGAGGCAAGGCAAATCGCGGAATGTTGCGCATGTTACATACAGCTGGTAGCAAGAGCCACGCTCGTGTTGGCCATGACATGGGTGTGAAAACTGGGCGTCCTCCTAGAAGGGATGAAGTCTTTGTTGAAACGCACAAACGAAAAAATGGAGAAATTATTCCAGAGGCTGCAGAAACAGTTGAAATGCTAAAAGAGGCTGCAGAAGTTAACCCAGAGTTGAAGAACAAAACAATCCAGGAGGGCGATTTGTATTCACGTGTTTGTGGAACCAAGGAACCAAGAGGCCGTGTTCGTGTTTTAGGAAAGGGACCAACTCCTCAGGATGTGGGCACACCAGGAACACGTAGCAGAATGCCAACAAGACTTCAGCTAGAAATAGAATCTCATCGACAGACCAAACAAGAAGTTGTATGTCTGAATAAACGCATGGACGACATGCAACAACGTTTTAACATAATGGAGCATATGGTTATGTCTCAAGGTGTGCAGAATATAGAAACAAGTTCCCATCATGCTTCTAATTCTCGACATGCTGAGAGCCCAAGGAGTCCAGTACTTGAAGAGCTGCATCCTAATGAGCCTACCAATAGGCACTTGCTGGAGGAGCCTCATGCTGAGCCTACCAGTAGGCACTTGGATAATATCCTATCGGGTGATGACTTTATTATCCGCAAAAAAGCTATAACGCCAAGGGTGCCCTCAAGAAACACAGCCACAGGAAGCCATGAAGCCACCATTGCTGAAGGAGAAAATCTTGTTGGTAAAGATGTTATCTTATATGCTGTCTTGAGATCTGACACCCCTGTGGCTAAAGCAACAATTGTATCAATTCATCCAAGTTCCTTGGTGGGAGGTCAACCTCTAGGTGTTGAATTCTATGAAGTTGTTGTCAATGTCGTGCTTAAAAGAGATGCATTGCTTCCTCGTCCATATGATGATATGCAAACTATG
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| Protein seq | LLKQTNLRRKTMEKARGRSKEKVINGMAVGKNKENTLTDYEIRRKGVIAANNEMLQSLNLPPMGSNTHVQQRPKKIPKVTDGRNMVPCGDHNLRSRSRNNLEENVDENVGDDPEYQLEEDAMDDNEVDVEETLELEKVQQKKKEGRGITQKLNIISRVGEAKIKITLNEFGQPVGLDSEEFATTFGTFVRKKIPVACGDWRDVDVKDKLKVWEDVQKHYEINEYGLHFVLETSHMIWKDYKADLKKKHFDANLTDEELMDRRDLRVNEAQWKWLINHWRSPEAVARSIRGKANRGMLRMLHTAGSKSHARVGHDMGVKTGRPPRRDEVFVETHKRKNGEIIPEAAETVEMLKEAAEVNPELKNKTIQEGDLYSRVCGTKEPRGRVRVLGKGPTPQDVGTPGTRSRMPTRLQLEIESHRQTKQEVVCLNKRMDDMQQRFNIMEHMVMSQGVQNIETSSHHASNSRHAESPRSPVLEELHPNEPTNRHLLEEPHAEPTSRHLDNILSGDDFIIRKKAITPRVPSRNTATGSHEATIAEGENLVGKDVILYAVLRSDTPVAKATIVSIHPSSLVGGQPLGVEFYEVVVNVVLKRDALLPRPYDDMQTM |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os12g0417000 | Os12t0417000-01 | Chr12 | 12873432 | 12876080 | + | irgsp1_rep | ||
| CDS seq | TTGTTGAAGCAAACAAACCTAAGACGAAAAACAATGGAAAAGGCAAGAGGAAGGTCTAAAGAAAAGGTTATCAATGGAATGGCAGTTGGAAAGAATAAGGAAAACACTCTTACTGATTATGAAATACGTCGCAAAGGTGTCATAGCAGCAAACAATGAGATGTTACAATCTCTAAACCTCCCGCCCATGGGCAGCAATACGCATGTTCAACAACGACCCAAGAAAATACCTAAGGTAACTGATGGTAGAAACATGGTGCCATGTGGAGATCATAACTTGCGGTCTAGGTCAAGAAATAACCTAGAGGAAAATGTAGATGAAAATGTTGGCGATGATCCTGAATACCAACTAGAAGAAGATGCCATGGATGACAATGAAGTAGATGTAGAAGAAACTCTTGAACTTGAAAAAGTTCAGCAGAAAAAGAAGGAAGGAAGGGGTATCACTCAAAAGCTCAACATAATTTCAAGGGTGGGTGAAGCTAAAATCAAAATTACTCTCAACGAATTTGGTCAGCCGGTGGGGCTTGATTCTGAGGAATTTGCCACTACTTTTGGGACATTTGTGAGAAAGAAAATACCTGTTGCATGTGGTGATTGGAGAGATGTTGACGTCAAAGACAAGCTGAAAGTATGGGAAGATGTACAGAAACATTATGAGATCAATGAATATGGTTTACATTTTGTGTTGGAGACATCACATATGATATGGAAGGATTATAAGGCTGATTTGAAGAAGAAACATTTTGATGCAAATCTGACTGATGAGGAACTTATGGACAGACGTGACTTAAGAGTCAACGAGGCACAATGGAAGTGGCTTATTAACCATTGGAGATCTCCAGAAGCTGTGGCCCGCTCCATAAGAGGCAAGGCAAATCGCGGAATGTTGCGCATGTTACATACAGCTGGTAGCAAGAGCCACGCTCGTGTTGGCCATGACATGGGTGTGAAAACTGGGCGTCCTCCTAGAAGGGATGAAGTCTTTGTTGAAACGCACAAACGAAAAAATGGAGAAATTATTCCAGAGGCTGCAGAAACAGTTGAAATGCTAAAAGAGGCTGCAGAAGTTAACCCAGAGTTGAAGAACAAAACAATCCAGGAGGGCGATTTGTATTCACGTGTTTGTGGAACCAAGGAACCAAGAGGCCGTGTTCGTGTTTTAGGAAAGGGACCAACTCCTCAGGATGTGGGCACACCAGGAACACGTAGCAGAATGCCAACAAGACTTCAGCTAGAAATAGAATCTCATCGACAGACCAAACAAGAAGTTGTATGTCTGAATAAACGCATGGACGACATGCAACAACGTTTTAACATAATGGAGCATATGGTTATGTCTCAAGGTGTGCAGAATATAGAAACAAGTTCCCATCATGCTTCTAATTCTCGACATGCTGAGAGCCCAAGGAGTCCAGTACTTGAAGAGCTGCATCCTAATGAGCCTACCAATAGGCACTTGCTGGAGGAGCCTCATGCTGAGCCTACCAGTAGGCACTTGGATAATATCCTATCGGGTGATGACTTTATTATCCGCAAAAAAGCTATAACGCCAAGGGTGCCCTCAAGAAACACAGCCACAGGAAGCCATGAAGCCACCATTGCTGAAGGAGAAAATCTTGTTGGTAAAGATGTTATCTTATATGCTGTCTTGAGATCTGACACCCCTGTGGCTAAAGCAACAATTGTATCAATTCATCCAAGTTCCTTGGTGGGAGGTCAACCTCTAGGTGTTGAATTCTATGAAGTTGTTGTCAATGTCGTGCTTAAAAGAGATGCATTGCTTCCTCGTCCATATGATGATATGCAAACTATG
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| Protein seq | LLKQTNLRRKTMEKARGRSKEKVINGMAVGKNKENTLTDYEIRRKGVIAANNEMLQSLNLPPMGSNTHVQQRPKKIPKVTDGRNMVPCGDHNLRSRSRNNLEENVDENVGDDPEYQLEEDAMDDNEVDVEETLELEKVQQKKKEGRGITQKLNIISRVGEAKIKITLNEFGQPVGLDSEEFATTFGTFVRKKIPVACGDWRDVDVKDKLKVWEDVQKHYEINEYGLHFVLETSHMIWKDYKADLKKKHFDANLTDEELMDRRDLRVNEAQWKWLINHWRSPEAVARSIRGKANRGMLRMLHTAGSKSHARVGHDMGVKTGRPPRRDEVFVETHKRKNGEIIPEAAETVEMLKEAAEVNPELKNKTIQEGDLYSRVCGTKEPRGRVRVLGKGPTPQDVGTPGTRSRMPTRLQLEIESHRQTKQEVVCLNKRMDDMQQRFNIMEHMVMSQGVQNIETSSHHASNSRHAESPRSPVLEELHPNEPTNRHLLEEPHAEPTSRHLDNILSGDDFIIRKKAITPRVPSRNTATGSHEATIAEGENLVGKDVILYAVLRSDTPVAKATIVSIHPSSLVGGQPLGVEFYEVVVNVVLKRDALLPRPYDDMQTM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0417000 | RBH | 3.891613 | 4.714616 | 3.895051 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g22810 | RBH | 2.236129 | 3.322788 | 1.131899 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0195100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0009040 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0018140 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0009170 | RBH | 0.000000 | 8.951850 | 4.852402 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0017830 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0006220 | RBH | 0.0 | 0.0 | 1.106423 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0229200 | SBH | 0.003947 | 0.057283 | 0.005448 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0006190 | RBH | 0.0 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0251800 | SBH | 2.6271475 | 5.8382025 | 13.607565 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0006090 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0006340 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0012250 | RBH | 13.180040 | 11.125662 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0006210 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0017900 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0017340 | RBH | 0.0 | 0.0 | 0.0 |
