Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0016610 | OGI:12059120 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:21476550-21479630 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | agcattgcacgtataccgttcataagccaactgccctgtaaaaacaataaaaaccaattagtaaaccaaaacaaatggttcaggaagttgagaacaatacaggactaatgaatgcaacaacaaatcaggactggaggaccactgtacctatcgaacctacaatgtcagaatgtacaaaagagcaatatcaagctgaaatccctgctgcTtttccagtccatgtgagtataaaagcatcattgtttccttcccagccaaattctgtgagcaagttctcaaagttcattggaatgcttagttggtgttacatctttagtgggggcatgttggtagactactgatcgtgatacactgattttttccagtgactattttctgttcacaattattttaaaccaaaatctttttgaatgttttcgctttcaatttgtatgatgatgcttcacagctaatcaaatacaaggaaaattacaaatgcagttaagtttttcttagcttatgtcttgtctttagcagtattcacaagatcaaaaatagtgaactttttatgaagcctatgatgcaccaaagttaccagaacatgtgaaagtgttaaaaggaatgcaccgatttgttctgcaattgtttcctgagtagaaagcttaaatccatatcatttttgaaattccatcgatgccatagagcttaatatctctatggcgttggaaggtacaaatccttcatctggaaacaatattcaacatagagaaacataagcttttgttaccatgattaggtgcgactgaaataagaaacagagtgttgagaaaatattgccacaacagattatgtgaagcaattattgaggtgttgatctaatgtaccttaagcaaagatgaggctgttttgcacctttcactgaggatagggcatcattcatgtgtaaattagcatgcagtcaatagatcacacttcacgcattgacaacttgaacagcaacttcagactctatgctctgattagagccacaactcgactgagcatttctactgaggtatttatccattaactctcctgcctcactgaattgacccatttttgcaagtgcagcaacaattggccaatatgattgattattgctcgtgctgcagccactgcgctcccttgcaaatagaatttctttggccttattgactctcctttcatcacatagagcttttatcagggaattgtatgtgtaactgtctggaaccacaccaaatctcaccatgtcattgaaaatatcttcagctttatctaccttcctcatccggcaaaaactcaagatgaGggcattgaaggaatatgcatcaggagtaacgccatctattttcattttattaagaagatcaatagccttgttaacatgccctgctgaacaaagtgtgtgcattaatacattgtaagtctgagcatttggtctaacaccccactctgccatctcttcaaagcaaacaaaagcatcatccagttgatgggtattgcacaggccatcaataagagaggtaaatgtaatgatatctggcatgaaaccatgttccataagcatcttaagaacaacctttgcattatgtacattccctaattttgaatatccacttattagtgtgttaaaggtgacaaggttaggcaagaaacctttgtcttgcatctccttgacaatctcctctgctttatcaactgccccggccttcacgaagcaatctatcaccatgttgtaagacatcacactagacaagagtccctttaaaaccatgtgccccaaatagtggtttgccttcgaaaaattcttgcagttcagcaaggatttgattaccataatatatacatcaaatcctggattcccgccattcttaatgaaagaatctagtaactcacatagatcactcacctccaggcatttcagagcacaagacatgacaatgccaaatgctgtgctgtcaaggagataacccctagcactcatcctcttcgcaaactcaactgcctctttggccatgtccttcttcgacaggcaatacagcatcgtgtggcatgcgctcgggtgaagggacgtctcatggcctagccaatcactcaacatcctgtatgccttgtctctctccaagcagcgaaacacgccatgaaccagtgtcctgtaagtggcctcgctcggcgccacgcccttctccttcatcttgtccagcatacggaacgcctcctccaccctgccggcattgcagaacccgtccaccagcatggtgtacgtgaacacgttcggcctgatcccctccccctccatctgcctcaccagccggaccgcctcatcgacgatcccgcgccggcacacgccgtggacgagcgagttgtacgtgaagcggtcgggccggcacccgtcggcgggcatctgctggaacctgaggtacgcggtgtcgacggcccccgccctcaccgacgccgcgatcagcgcgttgtacaccgccgtgctgggcctcagacccagccgcggcatttgcacgaacacctcgtgcgcgtagcgtgcgagccccagcctgccccagctctccaccagcgcacacaccagctcctccgacacctcgcacccgcaacccctcacctccgccaccagcctccccgacagcaccaccggcccgcgccgccacagcgcgcccacgagcgcccgccgcacgccgccgtcgcgcgcgaagtgggcgccgaaccgcgacgcccacacgtagagccgcacgcagagcagcggctcccccaccccctccctctccgccgccgcacgaagcgcgcggacgacgaagcgggggccgaggcgggggagcgcggcggcgaactcggcgttgagacgggggaaccagtcatcctcggccaagatcgaggcggcgcgggcagggtcggcggggtccggtgggttcgcggcggatttggtggagaggctggatctcggtggggtttcggggcggcgatttgcgccggagaggcggcggcagcggcggcggcggaggaggaggagattggggtgatggatgctcctcatttgcggtttgcatccaacaaaaatcgccgcctttctgg
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| CDS seq | atgaggagcatccatcaccccaatctcctcctcctccgccgccgccgctgccgccgcctctccggcgcaaatcgccgccccgaaaccccaccgagatccagcctctccaccaaatccgccgcgaacccaccggaccccgccgaccctgcccgcgccgcctcgatcttggccgaggatgactggttcccccgtctcaacgccgagttcgccgccgcgctcccccgcctcggcccccgcttcgtcgtccgcgcgcttcgtgcggcggcggagagggagggggtgggggagccgctgctctgcgtgcggctctacgtgtgggcgtcgcggttcggcgcccacttcgcgcgcgacggcggcgtgcggcgggcgctcgtgggcgcgctgtggcggcgcgggccggtggtgctgtcggggaggctggtggcggaggtgaggggttgcgggtgcgaggtgtcggaggagctggtgtgtgcgctggtggagagctggggcaggctggggctcgcacgctacgcgcacgaggtgttcgtgcaaatgccgcggctgggtctgaggcccagcacggcggtgtacaacgcgctgatcgcggcgtcggtgagggcgggggccgtcgacaccgcgtacctcaggttccagcagatgcccgccgacgggtgccggcccgaccgcttcacgtacaactcgctcgtccacggcgtgtgccggcgcgggatcgtcgatgaggcggtccggctggtgaggcagatggagggggaggggatcaggccgaacgtgttcacgtacaccatgctggtggacgggttctgcaatgccggcagggtggaggaggcgttccgtatgctggacaagatgaaggagaagggcgtggcgccgagcgaggccacttacaggacactggttcatggcgtgtttcgctgcttggagagagacaaggcatacaggatgttgagtgattggctaggccatgagacgtcccttcacccgagcgcatgccacacgatgctgtattgcctgtcgaagaaggacatggccaaagaggcagttgagtttgcgaagaggatgagtgctaggggttatctccttgacagcacagcatttggcattgtcatgtcttgtgctctgaaatgcctggaggtgagtgatctatgtgagttactagattctttcattaagaatggcgggaatccaggatttgatgtatatattatggtaatcaaatccttgctgaactgcaagaatttttcgaaggcaaaccactatttggggcacatggttttaaagggactcttgtctagtgtgatgtcttacaacatggtgatagattgcttcgtgaaggccggggcagttgataaagcagaggagattgtcaaggagatgcaagacaaaggtttcttgcctaaccttgtcacctttaacacactaataagtggatattcaaaattagggaatgtacataatgcaaaggttgttcttaagatgcttatggaacatggtttcatgccagatatcattacatttacctctcttattgatggcctgtgcaatacccatcaactggatgatgcttttgtttgctttgaagagatggcagagtggggtgttagaccaaatgctcagacttacaatgtattaatgcacacactttgttcagcagggcatgttaacaaggctattgatcttcttaataaaatgaaaatagatggcgttactcctgatgcatattccttcaatgccCtcatcttgagtttttgccggatgaggaaggtagataaagctgaagatattttcaatgacatggtgagatttggtgtggttccagacagttacacatacaattccctgataaaagctctatgtgatgaaaggagagtcaataaggccaaagaaattctatttgcaagggagcgcagtggctgcagcacgagcaataatcaatcatattggccaattgttgctgcacttgcaaaaatgggtcaattcagtgaggcaggagagttaatggataaatacctcagtagaaatgctcagtcgagttgtggctctaatcagagcatagagtctgaagttgctgttcaagttgtcaatgcgtga
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| Protein seq | MRSIHHPNLLLLRRRRCRRLSGANRRPETPPRSSLSTKSAANPPDPADPARAASILAEDDWFPRLNAEFAAALPRLGPRFVVRALRAAAEREGVGEPLLCVRLYVWASRFGAHFARDGGVRRALVGALWRRGPVVLSGRLVAEVRGCGCEVSEELVCALVESWGRLGLARYAHEVFVQMPRLGLRPSTAVYNALIAASVRAGAVDTAYLRFQQMPADGCRPDRFTYNSLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAPSEATYRTLVHGVFRCLERDKAYRMLSDWLGHETSLHPSACHTMLYCLSKKDMAKEAVEFAKRMSARGYLLDSTAFGIVMSCALKCLEVSDLCELLDSFIKNGGNPGFDVYIMVIKSLLNCKNFSKANHYLGHMVLKGLLSSVMSYNMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHGFMPDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSAGHVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRFGVVPDSYTYNSLIKALCDERRVNKAKEILFARERSGCSTSNNQSYWPIVAALAKMGQFSEAGELMDKYLSRNAQSSCGSNQSIESEVAVQVVNA |
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| Function | Putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial [UniProtKB/Swiss-Prot:Q9LSQ2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0016610 | OsLima_12g0016610.01 | Chr12 | 21476550 | 21479630 | - | NAM | ||
| CDS seq | atgaggagcatccatcaccccaatctcctcctcctccgccgccgccgctgccgccgcctctccggcgcaaatcgccgccccgaaaccccaccgagatccagcctctccaccaaatccgccgcgaacccaccggaccccgccgaccctgcccgcgccgcctcgatcttggccgaggatgactggttcccccgtctcaacgccgagttcgccgccgcgctcccccgcctcggcccccgcttcgtcgtccgcgcgcttcgtgcggcggcggagagggagggggtgggggagccgctgctctgcgtgcggctctacgtgtgggcgtcgcggttcggcgcccacttcgcgcgcgacggcggcgtgcggcgggcgctcgtgggcgcgctgtggcggcgcgggccggtggtgctgtcggggaggctggtggcggaggtgaggggttgcgggtgcgaggtgtcggaggagctggtgtgtgcgctggtggagagctggggcaggctggggctcgcacgctacgcgcacgaggtgttcgtgcaaatgccgcggctgggtctgaggcccagcacggcggtgtacaacgcgctgatcgcggcgtcggtgagggcgggggccgtcgacaccgcgtacctcaggttccagcagatgcccgccgacgggtgccggcccgaccgcttcacgtacaactcgctcgtccacggcgtgtgccggcgcgggatcgtcgatgaggcggtccggctggtgaggcagatggagggggaggggatcaggccgaacgtgttcacgtacaccatgctggtggacgggttctgcaatgccggcagggtggaggaggcgttccgtatgctggacaagatgaaggagaagggcgtggcgccgagcgaggccacttacaggacactggttcatggcgtgtttcgctgcttggagagagacaaggcatacaggatgttgagtgattggctaggccatgagacgtcccttcacccgagcgcatgccacacgatgctgtattgcctgtcgaagaaggacatggccaaagaggcagttgagtttgcgaagaggatgagtgctaggggttatctccttgacagcacagcatttggcattgtcatgtcttgtgctctgaaatgcctggaggtgagtgatctatgtgagttactagattctttcattaagaatggcgggaatccaggatttgatgtatatattatggtaatcaaatccttgctgaactgcaagaatttttcgaaggcaaaccactatttggggcacatggttttaaagggactcttgtctagtgtgatgtcttacaacatggtgatagattgcttcgtgaaggccggggcagttgataaagcagaggagattgtcaaggagatgcaagacaaaggtttcttgcctaaccttgtcacctttaacacactaataagtggatattcaaaattagggaatgtacataatgcaaaggttgttcttaagatgcttatggaacatggtttcatgccagatatcattacatttacctctcttattgatggcctgtgcaatacccatcaactggatgatgcttttgtttgctttgaagagatggcagagtggggtgttagaccaaatgctcagacttacaatgtattaatgcacacactttgttcagcagggcatgttaacaaggctattgatcttcttaataaaatgaaaatagatggcgttactcctgatgcatattccttcaatgccCtcatcttgagtttttgccggatgaggaaggtagataaagctgaagatattttcaatgacatggtgagatttggtgtggttccagacagttacacatacaattccctgataaaagctctatgtgatgaaaggagagtcaataaggccaaagaaattctatttgcaagggagcgcagtggctgcagcacgagcaataatcaatcatattggccaattgttgctgcacttgcaaaaatgggtcaattcagtgaggcaggagagttaatggataaatacctcagtagaaatgctcagtcgagttgtggctctaatcagagcatagagtctgaagttgctgttcaagttgtcaatgcgtga
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| Protein seq | MRSIHHPNLLLLRRRRCRRLSGANRRPETPPRSSLSTKSAANPPDPADPARAASILAEDDWFPRLNAEFAAALPRLGPRFVVRALRAAAEREGVGEPLLCVRLYVWASRFGAHFARDGGVRRALVGALWRRGPVVLSGRLVAEVRGCGCEVSEELVCALVESWGRLGLARYAHEVFVQMPRLGLRPSTAVYNALIAASVRAGAVDTAYLRFQQMPADGCRPDRFTYNSLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAPSEATYRTLVHGVFRCLERDKAYRMLSDWLGHETSLHPSACHTMLYCLSKKDMAKEAVEFAKRMSARGYLLDSTAFGIVMSCALKCLEVSDLCELLDSFIKNGGNPGFDVYIMVIKSLLNCKNFSKANHYLGHMVLKGLLSSVMSYNMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHGFMPDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSAGHVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRFGVVPDSYTYNSLIKALCDERRVNKAKEILFARERSGCSTSNNQSYWPIVAALAKMGQFSEAGELMDKYLSRNAQSSCGSNQSIESEVAVQVVNA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0016610 | OsLima_12g0016610.02 | Chr12 | 21476956 | 21479592 | - | NAM | ||
| CDS seq | atgaggagcatccatcaccccaatctcctcctcctccgccgccgccgctgccgccgcctctccggcgcaaatcgccgccccgaaaccccaccgagatccagcctctccaccaaatccgccgcgaacccaccggaccccgccgaccctgcccgcgccgcctcgatcttggccgaggatgactggttcccccgtctcaacgccgagttcgccgccgcgctcccccgcctcggcccccgcttcgtcgtccgcgcgcttcgtgcggcggcggagagggagggggtgggggagccgctgctctgcgtgcggctctacgtgtgggcgtcgcggttcggcgcccacttcgcgcgcgacggcggcgtgcggcgggcgctcgtgggcgcgctgtggcggcgcgggccggtggtgctgtcggggaggctggtggcggaggtgaggggttgcgggtgcgaggtgtcggaggagctggtgtgtgcgctggtggagagctggggcaggctggggctcgcacgctacgcgcacgaggtgttcgtgcaaatgccgcggctgggtctgaggcccagcacggcggtgtacaacgcgctgatcgcggcgtcggtgagggcgggggccgtcgacaccgcgtacctcaggttccagcagatgcccgccgacgggtgccggcccgaccgcttcacgtacaactcgctcgtccacggcgtgtgccggcgcgggatcgtcgatgaggcggtccggctggtgaggcagatggagggggaggggatcaggccgaacgtgttcacgtacaccatgctggtggacgggttctgcaatgccggcagggtggaggaggcgttccgtatgctggacaagatgaaggagaagggcgtggcgccgagcgaggccacttacaggacactggttcatggcgtgtttcgctgcttggagagagacaaggcatacaggatgttgagtgattggctaggccatgagacgtcccttcacccgagcgcatgccacacgatgctgtattgcctgtcgaagaaggacatggccaaagaggcagttgagtttgcgaagaggatgagtgctaggggttatctccttgacagcacagcatttggcattgtcatgtcttgtgctctgaaatgcctggaggtgagtgatctatgtgagttactagattctttcattaagaatggcgggaatccaggatttgatgtatatattatggtaatcaaatccttgctgaactgcaagaatttttcgaaggcaaaccactatttggggcacatggttttaaagggactcttgtctagtgtgatgtcttacaacatggtgatagattgcttcgtgaaggccggggcagttgataaagcagaggagattgtcaaggagatgcaagacaaaggtttcttgcctaaccttgtcacctttaacacactaataagtggatattcaaaattagggaatgtacataatgcaaaggttgttcttaagatgcttatggaacatggtttcatgccagatatcattacatttacctctcttattgatggcctgtgcaatacccatcaactggatgatgcttttgtttgctttgaagagatggcagagtggggtgttagaccaaatgctcagacttacaatgtattaatgcacacactttgttcagcagggcatgttaacaaggctattgatcttcttaataaaatgaaaatagatggcgttactcctgatgcatattccttcaatgccCtcatcttgagtttttgccggatgaggaaggtagataaagctgaagatattttcaatgacatggtgagatttggtgtggttccagacagttacacatacaattccctgataaaagctctatgtgatgaaaggagagtcaataaggccaaagaaattctatttgcaagggagcgcagtggctgcagcacgagcaataatcaatcatattggccaattgttgctgcacttgcaaaaatgggtcaattcagtgaggcaggagagttaatggataaatacctcagtagaaatgctcagtcgagttgtggctctaatcagagcatagagtctgaagttgctgttcaagttgtcaatgcgtga
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| Protein seq | MRSIHHPNLLLLRRRRCRRLSGANRRPETPPRSSLSTKSAANPPDPADPARAASILAEDDWFPRLNAEFAAALPRLGPRFVVRALRAAAEREGVGEPLLCVRLYVWASRFGAHFARDGGVRRALVGALWRRGPVVLSGRLVAEVRGCGCEVSEELVCALVESWGRLGLARYAHEVFVQMPRLGLRPSTAVYNALIAASVRAGAVDTAYLRFQQMPADGCRPDRFTYNSLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAPSEATYRTLVHGVFRCLERDKAYRMLSDWLGHETSLHPSACHTMLYCLSKKDMAKEAVEFAKRMSARGYLLDSTAFGIVMSCALKCLEVSDLCELLDSFIKNGGNPGFDVYIMVIKSLLNCKNFSKANHYLGHMVLKGLLSSVMSYNMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHGFMPDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSAGHVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRFGVVPDSYTYNSLIKALCDERRVNKAKEILFARERSGCSTSNNQSYWPIVAALAKMGQFSEAGELMDKYLSRNAQSSCGSNQSIESEVAVQVVNA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.132710 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0557800 | RBH | 1.634631 | 0.943517 | 1.472650 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g37100 | RBH | 1.118113 | 0.637314 | 0.374340 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0557800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0017070 | RBH | 0.416359 | 3.152740 | 2.277479 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0017190 | RBH | 0.203747 | 1.070994 | 2.217284 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0017550 | RBH | 0.335646 | 0.000000 | 3.763598 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0016870 | RBH | 0.049081 | 0.035434 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0016470 | RBH | 2.417380 | 3.926570 | 4.296042 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0364300 | SBH | 0.0541555 | 0.9490425 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0016370 | RBH | 0.193744 | 0.000000 | 0.390772 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0332700 | RBH | 2.9165055 | 4.491053 | 15.4628095 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0016300 | RBH | 0.053336 | 0.063565 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0016850 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0016810 | RBH | 2.442729 | 5.049098 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0016790 | RBH | 0.218279 | 0.0 | 0.368778 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0016970 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G016740 | RBH | 0.370153 | 1.660556 | 1.108235 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0016400 | RBH | 1.432644 | 1.836925 | 2.188028 |
