Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0014690 | OGI:12052770 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:19336325-19340023 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttacatggcaaagataaaattgagaacagaaagaaatgcaccttcggagtaggccttcatatccacatgagcaatgtctttgattttgacccagtctgaaccaacattagtttcatagcgctccagaaaccttgggtcacagccccagattgtcagcttattaagtgaagctggtagctgtgggaggaccttaattgcaggggctctttcgatatgcaagccctgtagtaattccaaattttccatctgagcaggtagggcctgcagattcttagcaacccctatctcgatcaaacggagcgaagaagcattctgtagcaaccactcctcaggcaaggactccatcgcatgatcatcaccgatgtgcagctccatagtgtacttgagactccttattggctccactagcaacatcgcttcacgatcaacttcgagcttacgcagcttaaaggagcaaccagcttgttcagaatataaatgatggatcttgtcacaacataggattgatagaactctcaaggatggagcagctccaagaccacccaaggataacaagtttttgcatcttgctatggaaacatcattcagatttttcagagtcctaaacacttcctctgatggaagtttctctatgttacagcagctgaacagtgtaaaacttctgagggatgtgaggtcttgcagtgacatgagaactgaatcctcaatatgaccacatggattgatgtccaacttcttgagtgacataggccacaggttgcctttggcctcaacattcctcagcattgggcatgcaactatttctagggaagtcaggtgatgtaattctgttaaaccatttgcaggcagatgtcttaggttttcacaatgtctcacaagtaatgtcttgagggactgaagatattgctgcttctccagaagacctttatccagagaagtcaaatcttcacaacattcaatgtgcaaaagaacaagacatgactttactgatgatgacgagaatgatgattcacgcgtaccagtataactttgatgtatcatcggcagaacagcaagcccaacatgctttattattaattgatgaagggtacaaggtattgacgggagatttttcaggctagagcaccaccgaatgatgagagttttgagaaatggagggagaacattctctggttcattgttcccaaattgctcctttttcactgtacctatgcattctaactgtaaaaggtgttccaacttcagatacttcagtgaacttagcttctgaaatgacggcatgctcttccatttcatgcaacattcaagttcaagtgagaccaaatggatgagcgatggattctcaatccaaatcggaagtcggactccactatatccatgtatatgcaactgctgaatttctttgtttggttccaggctgtcaatgatttgatgatcaagattctctggatcattcaagtatttgttccatgacagagacaaaaatctcatctgtctcatgtcctttaTtttgatatccatagactctttacagttcctaacattttggagatttcttaggctgagtcgacataggccagttaaattactcagcacactcatactgtgaccatcattttcagcaaccccaattccatgtaactcctgaagcgaggttaacatcccaatttgaaggatcttggataacataatattttcaggaacatggagacaatgcaatgactgtaatttatgtatgtaattgaagtattcttcttcatcattagtgaagtaattgatcttgagcacttgcagatgatcgagtccacgcacatggttaattatagatccaacacatgaaaataaaaagagataacggagatgagttagagtgttgagttcacaaagttcaggtgaaagggatggcccacgcaggtatagcagacgcaagtgtctagaacactgcagaacatatcggagagcaagttcagattcttgatccagatagaactcactttgtatgataagagtccgcaaatacttcaaacgggggatctggtttaaattgccacaatgtacaattgacaagtgtctggtcatcggcatgacattctggaaatcatcgttatctactctcgcacattcaccttgtgagacaaattgtgccaagtcatgcattaaactatgcaagacataatattctttctgatctccattagaaggttctccttctagcatagggcagaagaatgattttttaaccaatgcattgaagtattgttcccccaaatcaacagccgtttttcccgattggctgagaggtaacaattgcctccccacatcagcatcccgtttttctgatgagctgagagatatcaatcgtttcgccacatcaaactctctttccagtgggctgagaggtatcaatccagaaccaatccacatgtttaccaattccaacttgtcaaatctgtgtccctttggaaatatactgcaatatctaaaacaattctgtagctccgtaggtagacggttgtaactaggtaaaagaaagtcaaatcccgctacatactgccagccttcttgaagtacggtgttccagtgttggggattcatattgcaactcaactgtgaagcaaccatagccgttagtagagggcatccaccaatccgttttgctatctgttcaccaatcaatgcgaaatcagcataatcttcagaacgcccatcagaaagcaaacaagtttcaaagagcttgagattgtcaacttcattaagttcacccaatttcacacagtcagctttaactcctatgccatcttctgcaatgtccactactgattgcatttgagtcgtcaataggatcctgctcccaggtttgcaatcttttagagaatctgccattgatttccactcctccagactagtatcatcccaggcatcatccagaacaagtagaagcttattgtctctgatattatcagtagcaatcgtggtctgcagcatagcaagtcttccggtaattgatgccactatagcccttgttattgcttctgcactaaaattaccatgcagtgacacccaggtacatgagtcaaaattcattcgagctttcgagtcctcataagcgagacgagcaagttctgtcttccccatgcctgccatacctactattgcaaatatggagacaggatagtttatgctaataggttgaggctcttcaatcaaccactgcactatctgttgctgctctctttctctaccaaacaataccatgcggttctcattgtatttgtaatagagattaccacgtggactgacaaaaccaatggatgggtagaatggcgcatctttttctaacataacgacagcatcttctaaccgccggatagcaaattccaggctattgccagaaggcacaaaatgcttgttaaagttgtgaagtatgggatcacgaacctcttgcagctttctgtgctcgacatcgtcgattgcgtcctccagatccgcaacagcgcgcaaaaggttcgtctctcgtggataattgacggcaaatcggtaccgcggataaccatggtcatttcgtacgactgagagaccctgcaacagcctctctttcctatcctggttgacgccatccaggtagaaggctttgtccaccaacgacatggcaaggctggtcgcccaatccacttgcaagcgaccccctccatcctccat
More
|
||||||||||
| CDS seq | atggaggatggagggggtcgcttgcaagtggattgggcgaccagccttgccatgtcgttggtggacaaagccttctacctggatggcgtcaaccaggataggaaagagaggctgttgcagggtctctcagtcgtacgaaatgaccatggttatccgcggtaccgatttgccgtcaattatccacgagagacgaaccttttgcgcgctgttgcggatctggaggacgcaatcgacgatgtcgagcacagaaagctgcaagaggttcgtgatcccatacttcacaactttaacaagcattttgtgccttctggcaatagcctggaatttgctatccggcggttagaagatgctgtcgttatgttagaaaaagatgcgccattctacccatccattggttttgtcagtccacgtggtaatctctattacaaatacaatgagaaccgcatggtattgtttggtagagaaagagagcagcaacagatagtgcagtggttgattgaagagcctcaacctattagcataaactatcctgtctccatatttgcaatagtaggtatggcaggcatggggaagacagaacttgctcgtctcgcttatgaggactcgaaagctcgaatgaattttgactcatgtacctgggtgtcactgcatggtaattttagtgcagaagcaataacaagggctatagtggcatcaattaccggaagacttgctatgctgcagaccacgattgctactgataatatcagagacaataagcttctacttgttctggatgatgcctgggatgatactagtctggaggagtggaaatcaatggcagattctctaaaagattgcaaacctgggagcaggatcctattgacgactcaaatgcaatcagtagtggacattgcagaagatggcataggagttaaagctgactgtgtgaaattgggtgaacttaatgaagttgacaatctcaagctctttgaaacttgtttgctttctgatgggcgttctgaagattatgctgatttcgcattgattgatttgacttctctggataaaggtcttctggagaagcagcaatatcttcagtccctcaagacattacttgtgagacattgtgaaaacctaagacatctgcctgcaaatggtttaacagaattacatcacctgacttccctagaaatagttgcatgcccaatgctgaggaatgttgaggccaaaggcaacctgtggcctatgtcactcaagaagttggacatcaatccatgtggtcatattgaggattcagttctcatgtcactgcaagacctcacatccctcagaagttttacactgttcagctgctgtaacatagagaaacttccatcagaggaagtgtttaggactctgaaaaatctgaatgatgtttccatagcaagatgcaaaaacttgttatccttgggtggtcttggagctgctccatccttgagagttctatcaatcctatgttgtgacaagatccatcatttatattctgaacaagctggttgctcctttaagctgcgtaagctcgaagttgatcgtgaagcgatgttgctagtggagccaataaggagtctcaagtacactatggagctgcacatcggtgatgatcatgcgatggagtccttgcctgaggagtggttgctacagaatgcttcttcgctccgtttgatcgagataggggttgctaagaatctgcaggccctacctgctcagatggaaaatttggaattactacagggcttgcatatcgaaagagcccctgcaattaaggtcctcccacagctaccagcttcacttaataagctgacaatctggggctgtgacccaaggtttctggagcgctatgaaactaatgttggttcagactgggtcaaaatcaaagacattgctcatgtggatatgaaggcctactccgaaggtgcatttctttctgttctcaattttatctttgccatgtaa
More
|
||||||||||
| Protein seq | MEDGGGRLQVDWATSLAMSLVDKAFYLDGVNQDRKERLLQGLSVVRNDHGYPRYRFAVNYPRETNLLRAVADLEDAIDDVEHRKLQEVRDPILHNFNKHFVPSGNSLEFAIRRLEDAVVMLEKDAPFYPSIGFVSPRGNLYYKYNENRMVLFGREREQQQIVQWLIEEPQPISINYPVSIFAIVGMAGMGKTELARLAYEDSKARMNFDSCTWVSLHGNFSAEAITRAIVASITGRLAMLQTTIATDNIRDNKLLLVLDDAWDDTSLEEWKSMADSLKDCKPGSRILLTTQMQSVVDIAEDGIGVKADCVKLGELNEVDNLKLFETCLLSDGRSEDYADFALIDLTSLDKGLLEKQQYLQSLKTLLVRHCENLRHLPANGLTELHHLTSLEIVACPMLRNVEAKGNLWPMSLKKLDINPCGHIEDSVLMSLQDLTSLRSFTLFSCCNIEKLPSEEVFRTLKNLNDVSIARCKNLLSLGGLGAAPSLRVLSILCCDKIHHLYSEQAGCSFKLRKLEVDREAMLLVEPIRSLKYTMELHIGDDHAMESLPEEWLLQNASSLRLIEIGVAKNLQALPAQMENLELLQGLHIERAPAIKVLPQLPASLNKLTIWGCDPRFLERYETNVGSDWVKIKDIAHVDMKAYSEGAFLSVLNFIFAM |
||||||||||
| Function | Putative disease resistance protein RGA3 [UniProtKB/Swiss-Prot:Q7XA40] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0014690 | OsLima_12g0014690.01 | Chr12 | 19336325 | 19340023 | - | NAM | ||
| CDS seq | atggaggatggagggggtcgcttgcaagtggattgggcgaccagccttgccatgtcgttggtggacaaagccttctacctggatggcgtcaaccaggataggaaagagaggctgttgcagggtctctcagtcgtacgaaatgaccatggttatccgcggtaccgatttgccgtcaattatccacgagagacgaaccttttgcgcgctgttgcggatctggaggacgcaatcgacgatgtcgagcacagaaagctgcaagaggttcgtgatcccatacttcacaactttaacaagcattttgtgccttctggcaatagcctggaatttgctatccggcggttagaagatgctgtcgttatgttagaaaaagatgcgccattctacccatccattggttttgtcagtccacgtggtaatctctattacaaatacaatgagaaccgcatggtattgtttggtagagaaagagagcagcaacagatagtgcagtggttgattgaagagcctcaacctattagcataaactatcctgtctccatatttgcaatagtaggtatggcaggcatggggaagacagaacttgctcgtctcgcttatgaggactcgaaagctcgaatgaattttgactcatgtacctgggtgtcactgcatggtaattttagtgcagaagcaataacaagggctatagtggcatcaattaccggaagacttgctatgctgcagaccacgattgctactgataatatcagagacaataagcttctacttgttctggatgatgcctgggatgatactagtctggaggagtggaaatcaatggcagattctctaaaagattgcaaacctgggagcaggatcctattgacgactcaaatgcaatcagtagtggacattgcagaagatggcataggagttaaagctgactgtgtgaaattgggtgaacttaatgaagttgacaatctcaagctctttgaaacttgtttgctttctgatgggcgttctgaagattatgctgatttcgcattgattgatttgacttctctggataaaggtcttctggagaagcagcaatatcttcagtccctcaagacattacttgtgagacattgtgaaaacctaagacatctgcctgcaaatggtttaacagaattacatcacctgacttccctagaaatagttgcatgcccaatgctgaggaatgttgaggccaaaggcaacctgtggcctatgtcactcaagaagttggacatcaatccatgtggtcatattgaggattcagttctcatgtcactgcaagacctcacatccctcagaagttttacactgttcagctgctgtaacatagagaaacttccatcagaggaagtgtttaggactctgaaaaatctgaatgatgtttccatagcaagatgcaaaaacttgttatccttgggtggtcttggagctgctccatccttgagagttctatcaatcctatgttgtgacaagatccatcatttatattctgaacaagctggttgctcctttaagctgcgtaagctcgaagttgatcgtgaagcgatgttgctagtggagccaataaggagtctcaagtacactatggagctgcacatcggtgatgatcatgcgatggagtccttgcctgaggagtggttgctacagaatgcttcttcgctccgtttgatcgagataggggttgctaagaatctgcaggccctacctgctcagatggaaaatttggaattactacagggcttgcatatcgaaagagcccctgcaattaaggtcctcccacagctaccagcttcacttaataagctgacaatctggggctgtgacccaaggtttctggagcgctatgaaactaatgttggttcagactgggtcaaaatcaaagacattgctcatgtggatatgaaggcctactccgaaggtgcatttctttctgttctcaattttatctttgccatgtaa
More
|
|||||||
| Protein seq | MEDGGGRLQVDWATSLAMSLVDKAFYLDGVNQDRKERLLQGLSVVRNDHGYPRYRFAVNYPRETNLLRAVADLEDAIDDVEHRKLQEVRDPILHNFNKHFVPSGNSLEFAIRRLEDAVVMLEKDAPFYPSIGFVSPRGNLYYKYNENRMVLFGREREQQQIVQWLIEEPQPISINYPVSIFAIVGMAGMGKTELARLAYEDSKARMNFDSCTWVSLHGNFSAEAITRAIVASITGRLAMLQTTIATDNIRDNKLLLVLDDAWDDTSLEEWKSMADSLKDCKPGSRILLTTQMQSVVDIAEDGIGVKADCVKLGELNEVDNLKLFETCLLSDGRSEDYADFALIDLTSLDKGLLEKQQYLQSLKTLLVRHCENLRHLPANGLTELHHLTSLEIVACPMLRNVEAKGNLWPMSLKKLDINPCGHIEDSVLMSLQDLTSLRSFTLFSCCNIEKLPSEEVFRTLKNLNDVSIARCKNLLSLGGLGAAPSLRVLSILCCDKIHHLYSEQAGCSFKLRKLEVDREAMLLVEPIRSLKYTMELHIGDDHAMESLPEEWLLQNASSLRLIEIGVAKNLQALPAQMENLELLQGLHIERAPAIKVLPQLPASLNKLTIWGCDPRFLERYETNVGSDWVKIKDIAHVDMKAYSEGAFLSVLNFIFAM
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.119400 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0511600 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g32680 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0511600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0014950 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0015090 | RBH | 0.0 | 0.297731 | 0.088328 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0014990 | RBH | 0.0 | 1.929208 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0014800 | RBH | 0.0 | 0.062222 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0014330 | SBH | 1.816516 | 3.163459 | 3.415550 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0264900 | SBH | 0.0695325 | 0.2333155 | 0.293939 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0014540 | SBH | 0.075205 | 0.238336 | 0.238006 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0294600 | SBH | 1.877705 | 5.336656 | 2.894537 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0014700 | RBH | 0.112766 | 0.215588 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0014880 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0014840 | RBH | 0.0 | 3.198710 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0014740 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0014890 | RBH | 0.0 | 1.756165 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G014800 | RBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0014580 | RBH | 0.0 | 4.785038 | 1.625194 |
