Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0013370 | OGI:12049880 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:17960642-17963794 | ||||||||
| Gene Symbol | RGA2 | ||||||||||
| DNA seq | atgcaaatgagattcactaaaatgagctggggagctgctgcccgagggatccagacagccacagggtttgttacaagcgtcaatacatgggctgaattcttcaattgtctgagctcagccatttcatctgcatgctcttggatcaacattcatcagaaaccacagaacgattttgtaaaggaagaaatccagcatctgcaaagcgatttatggcagctacagacaactctgccaaaaatgcgcaaccttgttgagatacttgagtggcaaatctataaaaaaccagctgcagaactcctcccacatatcaaggatgcattgctagatgctgaagacatcattgatgaatttaattactatgagctcaaggcaaagatagaggggagaatagaggaatgcctaacatcgtctggatgccaggaattctatatgagtgtcattcgaggaagctttaacagagtgaaagaaatccaagagaagctagaccatctacatcgtcagtctatggacttgggcttgcattgtgcagcacaaagatttgacaaaattgttaggccagaaacaagttcttttcttaacagtcagatttttggacggcaagaagaagagaaaatggtgttggagttgttaggagtacaattacaagctaatgctggctacaaacgcaagcgaagcagtagagtggaggtcttgccaattgttggactgggaggtgtaggaaagactactttggcccaacaaatttgcaagaatcaaatggtgaaagctcactttgatatgatcctttgggcatgtgtatcagatgactttaacgcaaagaggttaactaaagaggtaatccaatcttccaagaaagaaacatcatttgacaatttggattctcttcagtctattttaaaagatactgttgagttaaaaaggtttttacttgtactagatgacatttgggatgatgtcatggcagatggtgggcaagattggcaaaggttttgtgcaccgttgtcaaatgctcttcaaggaagcatgattttgatcaccacccggtcacagaaagttgctgataaggtgcggacaatggattgttttccattagaaggtctaactgaagatgttttctgggaatttttcattgtacaagcatttggaactgagagtttatccaaatacccagatctggaggacattggtagaagcataattctgaaattgaagggttctccgttggctgccaaaactattgggcgtcttttgaggactaatttgcatgcttcacactggaataacatattgcagagtgaactatggaagttggagcaggacaggacagatattctacctgccctgcgtttgagttatatgtatttaccaccccatctaaagaggtgtttctcattttgtgctgtgtaCCccaaagactacaggtttgaaaaggataccctagtcgacatatggctggcagaaggtttcgttgaacatgcaagtagctttccaactgtaactgttgtgcagcaatattttgaagagcttctaagccgatccttctttcagaaagtgacgcacggcaaatatgtgatacatgacttgatgcatgatatggcacagctagtttcgcaagatgaatgcttcatcataaggaatgcaaatgaccttcgaacaatcccttccaatgttcgccatctatcaattttcacaaaaagatatattggatgccatgatttaatgggactatgcaggtataagaaactgcgcacccttttgtgcagtaaagcttttatcaaaggtgagtttgcttctgtacttggcagctggtttaaggagcttcaacacatccgtgtgttgagttgttctcttcccatgatagaagatatacctgagggcatcagcaacttaaagcttgttggctacatttacttctcaagccaacgtactttcagcatccttccttcgtcattttgttgtctatataacctgcaaactctagatgcttcaacatgtgttttcagaagcctgccttgtgactttggaaacctgatcagcctaaggaaatttagagcgaaaaatttcagttatctcccaggagaggattcacgcatgcagtttctaagaggagagagaatcaaagtgttgaaatatgtaaatcaggtacagggaagtttgcttgtcaatttgcctggtctcaaaagtaaaaagaatattggccttactgtgttgaaaaaggagaataatctctactctctccatatatctcaatttgcagaggatgctagatatgaacaggaacaattggaagtctgtgaaaacctacatcctcatccggatcttcaacatttggaggtcactggttaccaaggagagaatttttgtcctagctggttcctgcctgacaacttaccaaacatgatatcgcttatatttgaggagtgccataatgctaagaagatatcattgcatagattaccatgcacaggattccagtacttgattaacctgtacatcatcgaatgcacaaatttatcaagcatcgaacaatttctgcaaccatgtcatataccggctatcaaaatgataagcataaagggatgccaggagttatcgttgatatcagctgaaagatttggaggttttcgtttcttagaagctttggtgatccgtgattgtccaagaatcagttgggaaaatgggctggcattgccgcccactctcacaagcctttcgttggtgaggTgtggggatatttctaagtggatacctgactgtctactgaacctatcctcccttgtccgcctgcagttGgttgggctttcagggacaatgtttattcctgggagtatctggaggaataatcttccattgctagattacttggagatctgtaatttccaagagcttcgttttactggtgtaccagaagcaattgaagaaataaacaatgtgcttattgacaagtgcccaatgctgaaagaactaaagcagcctttctccagaggtgatgttaccttcttgtgggggattccgactagtaaatggtacttgtcttaactgattcctttcatcgaattaccgtgtgttatactaaacattggggtttgctaactttaagtcatgtaaaaagttgctaatttttcatcacctaaaattacagatttctaaccc
More
|
||||||||||
| CDS seq | atgcaaatgagattcactaaaatgagctggggagctgctgcccgagggatccagacagccacagggtttgttacaagcgtcaatacatgggctgaattcttcaattgtctgagctcagccatttcatctgcatgctcttggatcaacattcatcagaaaccacagaacgattttgtaaaggaagaaatccagcatctgcaaagcgatttatggcagctacagacaactctgccaaaaatgcgcaaccttgttgagatacttgagtggcaaatctataaaaaaccagctgcagaactcctcccacatatcaaggatgcattgctagatgctgaagacatcattgatgaatttaattactatgagctcaaggcaaagatagaggggagaatagaggaatgcctaacatcgtctggatgccaggaattctatatgagtgtcattcgaggaagctttaacagagtgaaagaaatccaagagaagctagaccatctacatcgtcagtctatggacttgggcttgcattgtgcagcacaaagatttgacaaaattgttaggccagaaacaagttcttttcttaacagtcagatttttggacggcaagaagaagagaaaatggtgttggagttgttaggagtacaattacaagctaatgctggctacaaacgcaagcgaagcagtagagtggaggtcttgccaattgttggactgggaggtgtaggaaagactactttggcccaacaaatttgcaagaatcaaatggtgaaagctcactttgatatgatcctttgggcatgtgtatcagatgactttaacgcaaagaggttaactaaagaggtaatccaatcttccaagaaagaaacatcatttgacaatttggattctcttcagtctattttaaaagatactgttgagttaaaaaggtttttacttgtactagatgacatttgggatgatgtcatggcagatggtgggcaagattggcaaaggttttgtgcaccgttgtcaaatgctcttcaaggaagcatgattttgatcaccacccggtcacagaaagttgctgataaggtgcggacaatggattgttttccattagaaggtctaactgaagatgttttctgggaatttttcattgtacaagcatttggaactgagagtttatccaaatacccagatctggaggacattggtagaagcataattctgaaattgaagggttctccgttggctgccaaaactattgggcgtcttttgaggactaatttgcatgcttcacactggaataacatattgcagagtgaactatggaagttggagcaggacaggacagatattctacctgccctgcgtttgagttatatgtatttaccaccccatctaaagaggtgtttctcattttgtgctgtgtaCCccaaagactacaggtttgaaaaggataccctagtcgacatatggctggcagaaggtttcgttgaacatgcaagtagctttccaactgtaactgttgtgcagcaatattttgaagagcttctaagccgatccttctttcagaaagtgacgcacggcaaatatgtgatacatgacttgatgcatgatatggcacagctagtttcgcaagatgaatgcttcatcataaggaatgcaaatgaccttcgaacaatcccttccaatgttcgccatctatcaattttcacaaaaagatatattggatgccatgatttaatgggactatgcaggtataagaaactgcgcacccttttgtgcagtaaagcttttatcaaaggtgagtttgcttctgtacttggcagctggtttaaggagcttcaacacatccgtgtgttgagttgttctcttcccatgatagaagatatacctgagggcatcagcaacttaaagcttgttggctacatttacttctcaagccaacgtactttcagcatccttccttcgtcattttgttgtctatataacctgcaaactctagatgcttcaacatgtgttttcagaagcctgccttgtgactttggaaacctgatcagcctaaggaaatttagagcgaaaaatttcagttatctcccaggagaggattcacgcatgcagtttctaagaggagagagaatcaaagtgttgaaatatgtaaatcaggtacagggaagtttgcttgtcaatttgcctggtctcaaaagtaaaaagaatattggccttactgtgttgaaaaaggagaataatctctactctctccatatatctcaatttgcagaggatgctagatatgaacaggaacaattggaagtctgtgaaaacctacatcctcatccggatcttcaacatttggaggtcactggttaccaaggagagaatttttgtcctagctggttcctgcctgacaacttaccaaacatgatatcgcttatatttgaggagtgccataatgctaagaagatatcattgcatagattaccatgcacaggattccagtacttgattaacctgtacatcatcgaatgcacaaatttatcaagcatcgaacaatttctgcaaccatgtcatataccggctatcaaaatgataagcataaagggatgccaggagttatcgttgatatcagctgaaagatttggaggttttcgtttcttagaagctttggtgatccgtgattgtccaagaatcagttgggaaaatgggctggcattgccgcccactctcacaagcctttcgttggtgaggTgtggggatatttctaagtggatacctgactgtctactgaacctatcctcccttgtccgcctgcagttGgttgggctttcagggacaatgtttattcctgggagtatctggaggaataatcttccattgctagattacttggagatctgtaatttccaagagcttcgttttactggtgtaccagaagcaattgaagaaataaacaatgtgcttattgacaagtgcccaatgctgaaagaactaaagcagcctttctccagaggtgatgttaccttcttgtgggggattccgactagtaaatggtacttgtcttaa
More
|
||||||||||
| Protein seq | MQMRFTKMSWGAAARGIQTATGFVTSVNTWAEFFNCLSSAISSACSWINIHQKPQNDFVKEEIQHLQSDLWQLQTTLPKMRNLVEILEWQIYKKPAAELLPHIKDALLDAEDIIDEFNYYELKAKIEGRIEECLTSSGCQEFYMSVIRGSFNRVKEIQEKLDHLHRQSMDLGLHCAAQRFDKIVRPETSSFLNSQIFGRQEEEKMVLELLGVQLQANAGYKRKRSSRVEVLPIVGLGGVGKTTLAQQICKNQMVKAHFDMILWACVSDDFNAKRLTKEVIQSSKKETSFDNLDSLQSILKDTVELKRFLLVLDDIWDDVMADGGQDWQRFCAPLSNALQGSMILITTRSQKVADKVRTMDCFPLEGLTEDVFWEFFIVQAFGTESLSKYPDLEDIGRSIILKLKGSPLAAKTIGRLLRTNLHASHWNNILQSELWKLEQDRTDILPALRLSYMYLPPHLKRCFSFCAVYPKDYRFEKDTLVDIWLAEGFVEHASSFPTVTVVQQYFEELLSRSFFQKVTHGKYVIHDLMHDMAQLVSQDECFIIRNANDLRTIPSNVRHLSIFTKRYIGCHDLMGLCRYKKLRTLLCSKAFIKGEFASVLGSWFKELQHIRVLSCSLPMIEDIPEGISNLKLVGYIYFSSQRTFSILPSSFCCLYNLQTLDASTCVFRSLPCDFGNLISLRKFRAKNFSYLPGEDSRMQFLRGERIKVLKYVNQVQGSLLVNLPGLKSKKNIGLTVLKKENNLYSLHISQFAEDARYEQEQLEVCENLHPHPDLQHLEVTGYQGENFCPSWFLPDNLPNMISLIFEECHNAKKISLHRLPCTGFQYLINLYIIECTNLSSIEQFLQPCHIPAIKMISIKGCQELSLISAERFGGFRFLEALVIRDCPRISWENGLALPPTLTSLSLVRCGDISKWIPDCLLNLSSLVRLQLVGLSGTMFIPGSIWRNNLPLLDYLEICNFQELRFTGVPEAIEEINNVLIDKCPMLKELKQPFSRGDVTFLWGIPTSKWYLS |
||||||||||
| Function | Putative disease resistance protein RGA3 [UniProtKB/Swiss-Prot:Q7XA40] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0013370 | OsLima_12g0013370.01 | Chr12 | 17960642 | 17963794 | + | NAM | ||
| CDS seq | atgcaaatgagattcactaaaatgagctggggagctgctgcccgagggatccagacagccacagggtttgttacaagcgtcaatacatgggctgaattcttcaattgtctgagctcagccatttcatctgcatgctcttggatcaacattcatcagaaaccacagaacgattttgtaaaggaagaaatccagcatctgcaaagcgatttatggcagctacagacaactctgccaaaaatgcgcaaccttgttgagatacttgagtggcaaatctataaaaaaccagctgcagaactcctcccacatatcaaggatgcattgctagatgctgaagacatcattgatgaatttaattactatgagctcaaggcaaagatagaggggagaatagaggaatgcctaacatcgtctggatgccaggaattctatatgagtgtcattcgaggaagctttaacagagtgaaagaaatccaagagaagctagaccatctacatcgtcagtctatggacttgggcttgcattgtgcagcacaaagatttgacaaaattgttaggccagaaacaagttcttttcttaacagtcagatttttggacggcaagaagaagagaaaatggtgttggagttgttaggagtacaattacaagctaatgctggctacaaacgcaagcgaagcagtagagtggaggtcttgccaattgttggactgggaggtgtaggaaagactactttggcccaacaaatttgcaagaatcaaatggtgaaagctcactttgatatgatcctttgggcatgtgtatcagatgactttaacgcaaagaggttaactaaagaggtaatccaatcttccaagaaagaaacatcatttgacaatttggattctcttcagtctattttaaaagatactgttgagttaaaaaggtttttacttgtactagatgacatttgggatgatgtcatggcagatggtgggcaagattggcaaaggttttgtgcaccgttgtcaaatgctcttcaaggaagcatgattttgatcaccacccggtcacagaaagttgctgataaggtgcggacaatggattgttttccattagaaggtctaactgaagatgttttctgggaatttttcattgtacaagcatttggaactgagagtttatccaaatacccagatctggaggacattggtagaagcataattctgaaattgaagggttctccgttggctgccaaaactattgggcgtcttttgaggactaatttgcatgcttcacactggaataacatattgcagagtgaactatggaagttggagcaggacaggacagatattctacctgccctgcgtttgagttatatgtatttaccaccccatctaaagaggtgtttctcattttgtgctgtgtaCCccaaagactacaggtttgaaaaggataccctagtcgacatatggctggcagaaggtttcgttgaacatgcaagtagctttccaactgtaactgttgtgcagcaatattttgaagagcttctaagccgatccttctttcagaaagtgacgcacggcaaatatgtgatacatgacttgatgcatgatatggcacagctagtttcgcaagatgaatgcttcatcataaggaatgcaaatgaccttcgaacaatcccttccaatgttcgccatctatcaattttcacaaaaagatatattggatgccatgatttaatgggactatgcaggtataagaaactgcgcacccttttgtgcagtaaagcttttatcaaaggtgagtttgcttctgtacttggcagctggtttaaggagcttcaacacatccgtgtgttgagttgttctcttcccatgatagaagatatacctgagggcatcagcaacttaaagcttgttggctacatttacttctcaagccaacgtactttcagcatccttccttcgtcattttgttgtctatataacctgcaaactctagatgcttcaacatgtgttttcagaagcctgccttgtgactttggaaacctgatcagcctaaggaaatttagagcgaaaaatttcagttatctcccaggagaggattcacgcatgcagtttctaagaggagagagaatcaaagtgttgaaatatgtaaatcaggtacagggaagtttgcttgtcaatttgcctggtctcaaaagtaaaaagaatattggccttactgtgttgaaaaaggagaataatctctactctctccatatatctcaatttgcagaggatgctagatatgaacaggaacaattggaagtctgtgaaaacctacatcctcatccggatcttcaacatttggaggtcactggttaccaaggagagaatttttgtcctagctggttcctgcctgacaacttaccaaacatgatatcgcttatatttgaggagtgccataatgctaagaagatatcattgcatagattaccatgcacaggattccagtacttgattaacctgtacatcatcgaatgcacaaatttatcaagcatcgaacaatttctgcaaccatgtcatataccggctatcaaaatgataagcataaagggatgccaggagttatcgttgatatcagctgaaagatttggaggttttcgtttcttagaagctttggtgatccgtgattgtccaagaatcagttgggaaaatgggctggcattgccgcccactctcacaagcctttcgttggtgaggTgtggggatatttctaagtggatacctgactgtctactgaacctatcctcccttgtccgcctgcagttGgttgggctttcagggacaatgtttattcctgggagtatctggaggaataatcttccattgctagattacttggagatctgtaatttccaagagcttcgttttactggtgtaccagaagcaattgaagaaataaacaatgtgcttattgacaagtgcccaatgctgaaagaactaaagcagcctttctccagaggtgatgttaccttcttgtgggggattccgactagtaaatggtacttgtcttaa
More
|
|||||||
| Protein seq | MQMRFTKMSWGAAARGIQTATGFVTSVNTWAEFFNCLSSAISSACSWINIHQKPQNDFVKEEIQHLQSDLWQLQTTLPKMRNLVEILEWQIYKKPAAELLPHIKDALLDAEDIIDEFNYYELKAKIEGRIEECLTSSGCQEFYMSVIRGSFNRVKEIQEKLDHLHRQSMDLGLHCAAQRFDKIVRPETSSFLNSQIFGRQEEEKMVLELLGVQLQANAGYKRKRSSRVEVLPIVGLGGVGKTTLAQQICKNQMVKAHFDMILWACVSDDFNAKRLTKEVIQSSKKETSFDNLDSLQSILKDTVELKRFLLVLDDIWDDVMADGGQDWQRFCAPLSNALQGSMILITTRSQKVADKVRTMDCFPLEGLTEDVFWEFFIVQAFGTESLSKYPDLEDIGRSIILKLKGSPLAAKTIGRLLRTNLHASHWNNILQSELWKLEQDRTDILPALRLSYMYLPPHLKRCFSFCAVYPKDYRFEKDTLVDIWLAEGFVEHASSFPTVTVVQQYFEELLSRSFFQKVTHGKYVIHDLMHDMAQLVSQDECFIIRNANDLRTIPSNVRHLSIFTKRYIGCHDLMGLCRYKKLRTLLCSKAFIKGEFASVLGSWFKELQHIRVLSCSLPMIEDIPEGISNLKLVGYIYFSSQRTFSILPSSFCCLYNLQTLDASTCVFRSLPCDFGNLISLRKFRAKNFSYLPGEDSRMQFLRGERIKVLKYVNQVQGSLLVNLPGLKSKKNIGLTVLKKENNLYSLHISQFAEDARYEQEQLEVCENLHPHPDLQHLEVTGYQGENFCPSWFLPDNLPNMISLIFEECHNAKKISLHRLPCTGFQYLINLYIIECTNLSSIEQFLQPCHIPAIKMISIKGCQELSLISAERFGGFRFLEALVIRDCPRISWENGLALPPTLTSLSLVRCGDISKWIPDCLLNLSSLVRLQLVGLSGTMFIPGSIWRNNLPLLDYLEICNFQELRFTGVPEAIEEINNVLIDKCPMLKELKQPFSRGDVTFLWGIPTSKWYLS
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.038538 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0489800 | RBH | 0.071512 | 0.0 | 0.173627 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g30590 | RBH | 0.048360 | 0.0 | 0.044695 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0489800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0013700 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0013880 | RBH | 0.0 | 1.956644 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0006650 | SBH | 0.000000 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0013580 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0013240 | RBH | 0.000000 | 4.402149 | 2.353248 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0251700 | RBH | 0.0393325 | 0.1771505 | 0.0813885 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0013400 | RBH | 0.0 | 0.0 | 0.218795 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0261000 | SBH | 0.427013 | 3.092329 | 3.2352155 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0013430 | SBH | 0.101333 | 0.042860 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0013720 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0013560 | RBH | 0.0 | 1.848966 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0013560 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0013720 | RBH | 0.0 | 0.439794 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G013450 | RBH | 0.000000 | 0.0 | 0.319260 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0013290 | RBH | 0.0 | 2.497595 | 0.0 |
