Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_12g0013880 | OGI:12049880 | 14/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr12:18130547-18135177 | ||||||||
| Gene Symbol | RGA2 | ||||||||||
| DNA seq | atggcagatggtgggcaagattggcaaaggttttgtgcaccgttgtcaaatgctcttcaaggaagcatgattttgatcaccacccggtcacagaaagttgctgataaggtgcggacaatggattgttttccattagaaggtctaactgaagatgttttctgggaatttttcattgtacaagcatttggaactgagagtttatccaaatacccagatctggaggacattggtagaagcataattctgaaattgaagggttctccgttggctgccaaaactattgggcgtcttttgaggactaatttgcatgcttcacactggaataacatattgcagagtgaactatggaagttggagcaggacaggacagatattctacctgccctgcgtttgagttatatgtatttaccaccccatctaaagaggtgtttctcattttgtgctgtgtaccccaaagactacaggtttgaaaaggataccctagtcgacatatggctggcagaaggtttcgttgaacatgcaagtagctttccaactgtaactgttgtgcagcaatattttgaagagcttctaagccgatccttctttcagaaagtgacgcacggcaaatatgtgatacatgacttgatgcatgatatggcacagctagtttcgcaagatgaatgcttcatcataaggaatgcaaatgaccttcgaacaatcccttccaatgttcgccatctatcaattttcacaaaaagatatattggatgccatgatttaatgggactatgcaggtataagaaactgcgcacccttttgtgcagtaaagcttttatcaaaggtgagtttgcttctgtacttggcagctggtttaaggagcttcaacacatccgtgtgttgagttgttctcttcccatgatagaagatatacctgagggcatcagcaacttaaagcttgttggctacatttacttctcaagccaacgtactttcagcatccttccttcgtcattttgttgtctatataacctgcaaactctagatgcttcaacatgtgttttcagaagcctgccttgtgactttggaaacctgatcagcctaaggaaatttagagcgaaaaatttcagttatctcccaggagaggattcacgcatgcagtttctaagaggagagagaatcaaagtgttgaaatatgtaaatcaggtacagggaagtttgcttgtcaatttgcctggtctcaaaagtaaaaagaatattggccttactgtgttgaaaaaggagaataatctctactctctccatatatctcaatttgcagaggatgctagttatgaacaggaacaattggaagtctgtgaaaacctacatcctcatccggatcttcaacatttggaggtcactggttaccaaggagagaatttttgtcctagctggttcctgcctgacaacttaccaaacatgatatcgcttatatttgaggagtgccataatgctaagaagatatcattgcatagattaccatgcacaggattccagtacttgattaacctgtacatcatcgaatgcacaaatttatcaagcatcgaacaatttctgcaaccatgtcatataccggctatcaaaatgataagcataaagggatgccaggagttatcgtcgatatcagctgaaagatttggaggttttcgtttcttagaagctttggtgatccgtgattgtccaagaatcagttgggaaaatgggctggcattgccgcccactctcacaagcctttcgttggtgaggtgtggggatatttctaagtggatacctgactgtctactgaacctatcctcccttgtccgcctgcagttggttgggctttcagggacaatgtttattcctgggagtatctggaggaataatcttccattgctagattacttggagatctgtaatttccaagagcttcgttttactggtgtaccagaagcaattgaagaaataaacaatgtgcttattgacaagtgcccaatgctgaaagaactaaagcagcctttctccagaggtgatgttaccttcttgtgggggattccgactagtaaatggtacttgtcttaactgattcctttcatcgaattaccgtgtgttatactaaagattggggtttgctaactttaagtcatgtaaaaagttgctaatttttcatcacctaaaattacagatttctaaccctaaaactggcagtgctatgtaaattgtaatgtataaatttagttacatttttctgcaattttgtgtatgcatatgatttaccttatctttgactctatctaagtttatcaatttaaagtttattttatgtctaagtaagaacaattcatagttcagcctttagcctataatgaagggattgcgtttaaatagaaacaagggacatgctgaaaatggttagattttcattcaagggatgaaaaaggttactacagttttcaaagattttagtcactcgaaagctagattaccccctaaaaattatattatggctttcatcatctgtgttaaatggttaaatgatttaaatacttaaaaatgatgaattaaatagcattgtgcttatggaatttatgggttatatccaccacagaattaagggagatacaaatagttcttatgaagttctcatgcattacccttgtttcacatccagataacagggcattccattcttgcacttcttttcctattcccatgttttgttggagagattctctgtccaaagtgataaatgaataacatgtttcaaaaattctatgacataatatgcagtgaatttgtcatgcaaaattaaatgatacaaagatatctacaatggttctacgggatctagagacaaatagtaagtcgatacaagaagagatgccaacagtacatcaaaataaatagttcatgaacaggtgaggcttatacaaggtgtattcactttctgttcgttacaaaccaatccatcttgttagaaatctaatcatcaatgcgggattccgtctttcaatcattccaaatcaacaagtagcggcattttccaccttgttaggaggggcattttcaaatacagatttgttcctttgtgcccaaatattacataatgccatggcgaaacaactttttttaggacacgcaaaaggcttgctatatttgtattaagaagagaagacatagttagccacgcttttacatacactctccgtctcatagaaaacaaatctatgatcctatgatcctaacaggagtcccaagcagaccaccagctgaggcagctttccttctgctgctatcgacaaatgcacctcatccacaatagttgctatcagctgcacctagtttttgatctcccggttgaacactctgctgttccgctctttcttgtgaagggtattgtacttgcagcgaagcggcgcaaaagttttccacatttgtctgtctccctcaaacttggcacgaccaatgaagaatcgcttgtaggctgacctggaagagtaagggcccgatgcatcccatctccaacaaaaatgagtcttgttcagcatggttcctaacccctcctccccgacacacaaaacgaagtctctattattgcatgattaattgagtatttgctaaaTtttttttaaaaaatggattaatatgattttttaaagcaactttcgtataaaaactttttgtaaaaaacacaccatttagcagtttaaaaagcgtgcacgcggaaaacgagggagaggttgggaactactactaccgaacgcagcctctcccaaaagctgtaggtattcaagcagaacctgtattcccaggcctcccctgatggcatgtatccaatgctatcctgcaacgcatctgatactgttctctttcggcaaatggatttgggtatcagatgatagattgccggtgctcaaggttcaattccaaggtgaaacaacctttttcaagaaggattgaaggatttattattatcaccttgtggtctagcaagttccttgttggccgtagcttctctgagtctgaagtcaaggccaggatgaattccattatttaaaattctagcaagttacagcatatcaagaaccgaaacattccggactaaaattcatagaaaagatgaagctcttcctctaccatattggcatctctttcatgacaatttgagctctcaccctttgataatttcccctgaaaagcatgagaataatgcttattttcactctccgaatgacaaaaaaagaatacactctacttggtcatgcatctattcctctataacgattcataaaatgatgaagtttgatttgcttgccaacaaatcatctacaaggaaaaatatgcattgtttattactagaaaattattaccccctaaatctggtcaactgttcagtgttcactgtggaagtctcaactgatttcacatgacccagtggaactgcttgtgttcataagttcattatgaaagtcagatttattttagcacaatttctatgtggatttacagaaagttaatctgatgcggtctacatttatgattaggttgggtatgtgatttgctttgcacatccatggagatttcattttcgacttcttttttactaccaggtattgatgagaagctactga
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| CDS seq | atggcagatggtgggcaagattggcaaaggttttgtgcaccgttgtcaaatgctcttcaaggaagcatgattttgatcaccacccggtcacagaaagttgctgataagaggatgctagttatgaacaggaacaattggaagtctgtgaaaacctacatcctcatccggatcttcaacatttggaggtcactggtattgatgagaagctactga |
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| Protein seq | MADGGQDWQRFCAPLSNALQGSMILITTRSQKVADKRMLVMNRNNWKSVKTYILIRIFNIWRSLVLMRSY |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_12g0013880 | OsKeNa_12g0013880.01 | Chr12 | 18130547 | 18135177 | + | NAM | ||
| CDS seq | atggcagatggtgggcaagattggcaaaggttttgtgcaccgttgtcaaatgctcttcaaggaagcatgattttgatcaccacccggtcacagaaagttgctgataagaggatgctagttatgaacaggaacaattggaagtctgtgaaaacctacatcctcatccggatcttcaacatttggaggtcactggtattgatgagaagctactga
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| Protein seq | MADGGQDWQRFCAPLSNALQGSMILITTRSQKVADKRMLVMNRNNWKSVKTYILIRIFNIWRSLVLMRSY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 1.956644 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0489800 | RBH | 0.071512 | 0.0 | 0.173627 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g30590 | RBH | 0.048360 | 0.0 | 0.044695 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0489800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0013700 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0013580 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0013240 | RBH | 0.000000 | 4.402149 | 2.353248 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0251700 | RBH | 0.0393325 | 0.1771505 | 0.0813885 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0013400 | RBH | 0.0 | 0.0 | 0.218795 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0013370 | RBH | 0.0 | 0.038538 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0013720 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0013560 | RBH | 0.0 | 1.848966 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0013560 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0013720 | RBH | 0.0 | 0.439794 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G013450 | RBH | 0.000000 | 0.0 | 0.319260 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0013290 | RBH | 0.0 | 2.497595 | 0.0 |
