Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0012390 | OGI:12046700 | 10/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:16560158-16565146 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttaaacgtgacaattatgtaggtcttgaatccttggatgcctttggacagcgtccctgtatgcaaacaccttgctggagttggctgtcacttcaacctcttcaagctttagtaggtgctcgatgccaacaagtggactactgccatattgtgctgccgctgctccactgctggagctgcacccttgttcgagctgagcaggcctcctgtcatctagcttcagagtctgaagctgtggcattgcccctatacaaaacttcaggcatggcaaaaaatcacatgctagaataaatttctctagttttggaaatctgtgggtataaatctcgatgtcgtcctcaggggttgcttgcgcagtcaagtcaagatcgatgaggcagggcagattggatagaacatggacgccggtgctctggagctgcttgacacgaatctctaacattgtgagcttgtcgcactgctccatccactccgggacagtgtggatgcttttacggatgatgagtcggtgaagactcttctgtgcaccatacacaatgcccggtgaataatcacccagaaaggttgagcaaaatttctcaaacgaggtatcacataagaaccgtttggctgcccgggggacaccttccaacgccttaattttagctaagatgtcacgttgtttctgatcaagcacaaacttaggcttgtctagcttggttaatatcggttcatcatcaccaggccccacgctgacagtatcttgaaaatgcatcttgccaacatcaaaggcaaacagagtctttagggagactagtttgccaatccaattaggcagctgtaaaacgcccgaaactgcgagatgacgcagcgatgacagagaaataacatctgatggaataccagtcaccaaaaggctgcatagtagatctagcgtcctcaaacactggagtctcccaattttctgaggcattatcaactggaaccctctgatcctcaagtgtctcaacaggaagagattacttacagcagacaaatcaaggagcgtaggtgccacataggccacaaggttcaatacccgcaaatgttcaaacTttgaaataggaggctgtgtactgcagccacgcaccgggaaagtaatgaaggacctaacttgtgatacttccatcctttccatctccaaattttcataggacaactgacagcataaccgacgaactggaaaccctctatcattcaatatggactgcttagttgccacagtgatgaagttttcctgctggcacttcgataaaataagatcaagcataaggtcatggactcgacatgatacaacctcaccgagacgattattatttggttcaatcaaactcctgttaataagttcgttaaaatagctgtcagcagcttcctccagatctaaaccagctttttcctcaacaaatccttcagctatccatagtcttgttaaatcaaccttgaaaattttagagtcctccggatatattccaaggtacaagaagcatgcccgaagatcatgtgggacatcactataactcagattcagtacatgtctcatccattctagagtaggatttgtttccaactcgtagcccagatagttctgtactttctcccacctttccacattcatgccatgactagccaaaggctagcaatgctaatgattgctaatggcaCccctttgcattttcttaacatgtcttctgatatttttctatattgctcagtaaaaccatcctcggaagcaaatagccttttgaaaaataacgatcgtgagttaacctcatcaagtggttgcatcttgtacaccataccatggaaatcaaagctacactttgtagctacatcttcgattcgtgttgtaattataactcggctaccataattattctgaacaaaagcacactggataatgttccatatcttggtgctccatatgtcatcaattacaataagatacctacaaatagattctttttgtcatgatcttttgggcactcaagtttgttcaattggaagtttggaacatctattaattggccatgcatccaatggttgatgttcctattgccctattagtggtaagacaacacactataacttaaaacaaatactccgtttttccaaattatataaagttttattctttgaaactagtactatggagagaggtaaaaatacttggttgcctccttaggatagttggactgttggagactataataaagctaaaaggtaataggagatagtttagtggtaaaagtcaccttttacaagtactaagatactatatttggggcatagtttgaactctaaaagttgttatatttgaacggatgaagtagaatatttgcatgtgccttaaaagtctctttttgataaggcaggtataattaataaaatgatctcaaactatattttataattttacaaaaccaaattatggcctacaaaacttatatttacataaaatgtgacattcattatatttgaatcatacttagataataaatcaaaatcctgctagtgaattttcagtggtacctctatttaatttaggttcgcatgtgaacatttgggacccaactgaatcagtcacccgatttgtttgagaaaaatatggcgccctttcccaacatgcatgccacattttttagtgcagcgcctccacatgcatgcctcatttctctcttccactcttcctacgtgcatgcaagctctccccaccactccctctcatcctattcacttaattagcgagttgaaaattgttttttctcacaaattacttttacggttcgtgatctgattacaccgttaatttcatcataattaaatatttacaaggatatatcacctgattatattttcctcactacTtttatttattatttgtatgatgcacatattttttaaattaggaaaaaccataatcaattaatggcttgaatttagttagagctcttaattgcagttccttagttactagaggctcagaataccttaaaattccgcagctagattaacatatgcagtggttagtggccatatatagttttttttcctaataaaactagagaaatcatgttataaaatgtggcctgaatataatgtagaaagtaaaaatagagaaattgagaaataaattcataatcaataataaagcatcaaaggagaatagttagtcattttagtccatatttataagccaaacacagcaatgtataccataaaatttgctagcatttgccaaaagttcgtgtctaatttgtctaaggtttagctactaaattacgtagagttgaaatttgctagcaaaataaagttgtgccaaattatactgagatgtgtgtgacatgtccgatatgattgtggaacctcccagtgtgctatgaagtaaacatgcacctaacatagagcctaatttgagctatgtcaacctaagacaacattctaatacgagagaaaatatgtagtgcaaatcagaaaactattgtaggatctaaaagtagaagtttgagatttgtccacgtcatcttttacttatggtgatttggacaaatctcaaacatctatttttagatcctacgatagTttcctggtttgcactacatgtttttccttgataggatcgaaagttccaaatggtgctaaaatctaatacaagtcaacctaaacagtacaaatgtacacatagttataaagtattagctatacacaagaaatattcacacgaactgaatatgaacgtcacatcaaagacaaactatatacagacttaggcatacctcttgttagcaaggtgttctctgagagtgtcaatgagcttttgattatcatctggaaattttgtgaactccgagggtgtcaatgagctcttgattataatctcttttttttgaacttctaaaagtagatttttcagaagcttcaacacgtcgggatttttggacactgacaagaatgatgtgcaattaaacttgtccttcacttgcttgtacacttggttagcaagagttgtcttgccaaggcctccaaagccaacgatagatacaactttgagttgttgggttggaccactctgtccttcttccgtgagccaccgggaaatttcttcccgtggaccatcaatgcctacaagatttttagccgcttcatacagcgcaggcagccgaggatcgatttccaccaccttaggacaagaggtcgtagcctcacctagaccgatatacctgctacggcgttgagccacctccatgacacgggccttgagttcttggatcttgtttgcgatctgataccgaacgcgcagcttcctgatctttcgtgcagtcttctggagcaacccatccttgttatggccatcaccaagatgatacatgaacacatcaatgcagtcctcaatgtcatacgccatctcgcggacattgtccctccacagcttctgctggccatccagccgctccatatctgcaagcttctccagcacaacattcatttcggccaactaagacctgaggaactcgatgtccttgcgcactcccttgagtttgtagcacttgtcaccgagcagcgtggctagcttggtgaggagaggcgccatcacccccatggaagcgctcacctcctccatctaaagcagcatgcatcatgaccatattaccggagtaatttattggtttggggtgaaattgatctcaaaagAaaaacgagaataataacaaaatgaaaaaaaaggtaggcgaagaaacgcactggggagataggtaggcgttcgtcgagaggaaaacgacgggtcgaggtaccggccggccgccgtcgtcgccgccgccaaatcgcacccgacccgagcaacccgggccactggccggccggtggcttcggctagcgccgcgggccagatcccgccccgcgtctacccgagctctcgccgctccggccgcccgcggcgctcggcgtctgcagcctcagccgcagcggagctcag
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| CDS seq | atgaatgttgtgctggagaagcttgcagatatggagcggctggatggccagcagaagctgtggagggacaatgtccgcgagatggcgtatgacattgaggactgcattgatgtgttcatgtatcatcttggtgatggccataacaaggatgggttgctccagaagactgcacgaaagatcaggaagctgcgcgttcggtatcagatcgcaaacaagatccaagaactcaaggcccgtgtcatggaggtggctcaacgccgtagcaggtatatcggtctaggtgaggctacgacctcttgtcctaaggtggtggaaatcgatcctcggctgcctgcgctgtatgaagcggctaaaaatcttgtaggcattgatggtccacgggaagaaatttcccggtggctcacggaagaaggacagagtggtccaacccaacaactcaaagttagctcattgacaccctcggagttcacaaaatttccagatgataatcaaaagctcattgacactctcagagaacaccttgctaacaagaggtatcttattgtaattgatgacatatggagcaccaagatatggaacattatccagtgtgcttttgttcagaataattatggtagccgagttataattacaacacgaatcgaagatgtagctacaaagtgtagctttgatttccatggtatggtgtacaagatgcaaccacttgatgaggttaactcacgatcgttatttttcaaaaggctatttgcttccgaggatggttttactgagcaatatagaaaaatatcagaagacattcatggcatgaatgtggaaaggtgggagaaagtacagaactatctgggctacgagttggaaacaaatcctactctagaatggatgagacatgtactgaatctgagttatagtgatgtcccacatgatcttcgggcatgcttcttgtaccttggaatatatccggaggactctaaaattttcaaggttgatttaacaagactatggatagctgaaggatttgttgaggaaaaagctggtttagatctggaggaagctgctgacagctattttaacgaacttattaacaggagtttgattgaaccaaataataatcgtctcggtgaggttgtatcatgtcgagtccatgaccttatgcttgatcttattttatcgaagtgccagcaggaaaacttcatcactgtggcaactaagcagtccatattgaatgatagagggtttccagttcgtcggttatgctgtcagttgtcctatgaaaatttggagatggaaaggatggaagtatcacaagttaggtccttcattactttcccggtgcgtggctgcagtacacagcctcctatttcaaAgtttgaacatttgcgggtattgaaccttgtggcctatgtggcacctacgctccttgatttgtctgctgtaagtaatctcttcctgttgagacacttgaggatcagagggttccagttgataatgcctcagaaaattgggagactccagtgtttgaggacgctagatctactatgcagccttttggtgactggtattccatcagatgttatttctctgtcatcgctgcgtcatctcgcagtttcgggcgttttacagctgcctaattggattggcaaactagtctccctaaagactctgtttgcctttgatgttggcaagatgcattttcaagatactgtcagcgtggggcctggtgatgatgaaccgatattaaccaagctagacaagcctaagtttgtgcttgatcagaaacaacgtgacatcttagctaaaattaaggcgttggaaggtgtcccccgggcagccaaacggttcttatgtgatacctcgtttgagaaattttgctcaacctttctgggtgattattcaccgggcattgtgtatggtgcacagaagagtcttcaccgactcatcatccgtaaaagcatccacactgtcccggagtggatggagcagtgcgacaagctcacaatgttagagattcgtgtcaagcagctccagagcaccggcgtccatgttctatccaatctgccctgcctcatcgatcttgacttgactgcgcaagcaacccctgaggacgacatcgagatttatacccacagatttccaaaactagagaaatttattctagcatgtgattttttgccatgcctgaagttttgtataggggcaatgccacagcttcagactctgaagctagatgacaggaggcctgctcagctcgaacaagggtgcagctccagcagtggagcagcggcagcacaatatggcagtagtccacttgttggcatcgagcacctactaaagcttgaagaggttgaagtgacagccaactccagcaaggtgtttgcatacagggacgctgtccaaaggcatccaaggattcaagacctacataattgtcacgtttaa
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| Protein seq | MNVVLEKLADMERLDGQQKLWRDNVREMAYDIEDCIDVFMYHLGDGHNKDGLLQKTARKIRKLRVRYQIANKIQELKARVMEVAQRRSRYIGLGEATTSCPKVVEIDPRLPALYEAAKNLVGIDGPREEISRWLTEEGQSGPTQQLKVSSLTPSEFTKFPDDNQKLIDTLREHLANKRYLIVIDDIWSTKIWNIIQCAFVQNNYGSRVIITTRIEDVATKCSFDFHGMVYKMQPLDEVNSRSLFFKRLFASEDGFTEQYRKISEDIHGMNVERWEKVQNYLGYELETNPTLEWMRHVLNLSYSDVPHDLRACFLYLGIYPEDSKIFKVDLTRLWIAEGFVEEKAGLDLEEAADSYFNELINRSLIEPNNNRLGEVVSCRVHDLMLDLILSKCQQENFITVATKQSILNDRGFPVRRLCCQLSYENLEMERMEVSQVRSFITFPVRGCSTQPPISKFEHLRVLNLVAYVAPTLLDLSAVSNLFLLRHLRIRGFQLIMPQKIGRLQCLRTLDLLCSLLVTGIPSDVISLSSLRHLAVSGVLQLPNWIGKLVSLKTLFAFDVGKMHFQDTVSVGPGDDEPILTKLDKPKFVLDQKQRDILAKIKALEGVPRAAKRFLCDTSFEKFCSTFLGDYSPGIVYGAQKSLHRLIIRKSIHTVPEWMEQCDKLTMLEIRVKQLQSTGVHVLSNLPCLIDLDLTAQATPEDDIEIYTHRFPKLEKFILACDFLPCLKFCIGAMPQLQTLKLDDRRPAQLEQGCSSSSGAAAAQYGSSPLVGIEHLLKLEEVEVTANSSKVFAYRDAVQRHPRIQDLHNCHV |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:F7J0N2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0012390 | OsLima_12g0012390.01 | Chr12 | 16560158 | 16565146 | - | NAM | ||
| CDS seq | atgaatgttgtgctggagaagcttgcagatatggagcggctggatggccagcagaagctgtggagggacaatgtccgcgagatggcgtatgacattgaggactgcattgatgtgttcatgtatcatcttggtgatggccataacaaggatgggttgctccagaagactgcacgaaagatcaggaagctgcgcgttcggtatcagatcgcaaacaagatccaagaactcaaggcccgtgtcatggaggtggctcaacgccgtagcaggtatatcggtctaggtgaggctacgacctcttgtcctaaggtggtggaaatcgatcctcggctgcctgcgctgtatgaagcggctaaaaatcttgtaggcattgatggtccacgggaagaaatttcccggtggctcacggaagaaggacagagtggtccaacccaacaactcaaagttagctcattgacaccctcggagttcacaaaatttccagatgataatcaaaagctcattgacactctcagagaacaccttgctaacaagaggtatcttattgtaattgatgacatatggagcaccaagatatggaacattatccagtgtgcttttgttcagaataattatggtagccgagttataattacaacacgaatcgaagatgtagctacaaagtgtagctttgatttccatggtatggtgtacaagatgcaaccacttgatgaggttaactcacgatcgttatttttcaaaaggctatttgcttccgaggatggttttactgagcaatatagaaaaatatcagaagacattcatggcatgaatgtggaaaggtgggagaaagtacagaactatctgggctacgagttggaaacaaatcctactctagaatggatgagacatgtactgaatctgagttatagtgatgtcccacatgatcttcgggcatgcttcttgtaccttggaatatatccggaggactctaaaattttcaaggttgatttaacaagactatggatagctgaaggatttgttgaggaaaaagctggtttagatctggaggaagctgctgacagctattttaacgaacttattaacaggagtttgattgaaccaaataataatcgtctcggtgaggttgtatcatgtcgagtccatgaccttatgcttgatcttattttatcgaagtgccagcaggaaaacttcatcactgtggcaactaagcagtccatattgaatgatagagggtttccagttcgtcggttatgctgtcagttgtcctatgaaaatttggagatggaaaggatggaagtatcacaagttaggtccttcattactttcccggtgcgtggctgcagtacacagcctcctatttcaaAgtttgaacatttgcgggtattgaaccttgtggcctatgtggcacctacgctccttgatttgtctgctgtaagtaatctcttcctgttgagacacttgaggatcagagggttccagttgataatgcctcagaaaattgggagactccagtgtttgaggacgctagatctactatgcagccttttggtgactggtattccatcagatgttatttctctgtcatcgctgcgtcatctcgcagtttcgggcgttttacagctgcctaattggattggcaaactagtctccctaaagactctgtttgcctttgatgttggcaagatgcattttcaagatactgtcagcgtggggcctggtgatgatgaaccgatattaaccaagctagacaagcctaagtttgtgcttgatcagaaacaacgtgacatcttagctaaaattaaggcgttggaaggtgtcccccgggcagccaaacggttcttatgtgatacctcgtttgagaaattttgctcaacctttctgggtgattattcaccgggcattgtgtatggtgcacagaagagtcttcaccgactcatcatccgtaaaagcatccacactgtcccggagtggatggagcagtgcgacaagctcacaatgttagagattcgtgtcaagcagctccagagcaccggcgtccatgttctatccaatctgccctgcctcatcgatcttgacttgactgcgcaagcaacccctgaggacgacatcgagatttatacccacagatttccaaaactagagaaatttattctagcatgtgattttttgccatgcctgaagttttgtataggggcaatgccacagcttcagactctgaagctagatgacaggaggcctgctcagctcgaacaagggtgcagctccagcagtggagcagcggcagcacaatatggcagtagtccacttgttggcatcgagcacctactaaagcttgaagaggttgaagtgacagccaactccagcaaggtgtttgcatacagggacgctgtccaaaggcatccaaggattcaagacctacataattgtcacgtttaa
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| Protein seq | MNVVLEKLADMERLDGQQKLWRDNVREMAYDIEDCIDVFMYHLGDGHNKDGLLQKTARKIRKLRVRYQIANKIQELKARVMEVAQRRSRYIGLGEATTSCPKVVEIDPRLPALYEAAKNLVGIDGPREEISRWLTEEGQSGPTQQLKVSSLTPSEFTKFPDDNQKLIDTLREHLANKRYLIVIDDIWSTKIWNIIQCAFVQNNYGSRVIITTRIEDVATKCSFDFHGMVYKMQPLDEVNSRSLFFKRLFASEDGFTEQYRKISEDIHGMNVERWEKVQNYLGYELETNPTLEWMRHVLNLSYSDVPHDLRACFLYLGIYPEDSKIFKVDLTRLWIAEGFVEEKAGLDLEEAADSYFNELINRSLIEPNNNRLGEVVSCRVHDLMLDLILSKCQQENFITVATKQSILNDRGFPVRRLCCQLSYENLEMERMEVSQVRSFITFPVRGCSTQPPISKFEHLRVLNLVAYVAPTLLDLSAVSNLFLLRHLRIRGFQLIMPQKIGRLQCLRTLDLLCSLLVTGIPSDVISLSSLRHLAVSGVLQLPNWIGKLVSLKTLFAFDVGKMHFQDTVSVGPGDDEPILTKLDKPKFVLDQKQRDILAKIKALEGVPRAAKRFLCDTSFEKFCSTFLGDYSPGIVYGAQKSLHRLIIRKSIHTVPEWMEQCDKLTMLEIRVKQLQSTGVHVLSNLPCLIDLDLTAQATPEDDIEIYTHRFPKLEKFILACDFLPCLKFCIGAMPQLQTLKLDDRRPAQLEQGCSSSSGAAAAQYGSSPLVGIEHLLKLEEVEVTANSSKVFAYRDAVQRHPRIQDLHNCHV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.182008 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0468300 | RBH | 1.552542 | 1.989932 | 0.480138 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g28250 | RBH | 1.064986 | 1.466989 | 0.177279 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0468300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0012820 | RBH | 0.182238 | 5.417646 | 3.334142 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0012970 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0012900 | RBH | 1.687630 | 0.0 | 4.245046 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0012640 | RBH | 0.000000 | 0.041887 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0012390 | RBH | 8.432953 | 0.0 | 6.703428 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0234800 | RBH | 1.978378 | 15.770687 | 11.114108 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0012580 | RBH | 0.649478 | 0.0 | 0.585667 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0257400 | RBH | 4.978761 | 1.29971 | 2.360776 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0012340 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0012750 | RBH | 0.463109 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0012610 | RBH | 6.598987 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0012560 | RBH | 1.080989 | 0.0 | 0.647967 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0012800 | RBH | 0.0 | 3.624916 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G012500 | RBH | 0.094266 | 0.910185 | 1.013057 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0012370 | RBH | 5.869416 | 2.555791 | 5.908302 |
