Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0011770 | OGI:12042520 | 9/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:15114626-15115492 | ||||||||
| Gene Symbol | CRL4, CHARK, S/T kinase, OsCRL4, OsHKL1, OsCDP, - | ||||||||||
| DNA seq | atgactaaatcttttgctcacaagcttggcagaggtggctttggtactgtttataaaggtagcctgcctgatggccgtgagatagccgtcaagatgctaaaggataccaagggtgatggggaggaattcataaatgaggttgctggcattagtaaaacttctcatatcaatgttgttaaccttctaggtttttcccttcaagggtcaaaaagagctctgatctatgagtacatgcccaatggttcacttgatagatattcttttggcgatagctctgtccaaggagataacaccctgagctgggatagactgttcaatattattgtcgggattgctcgagggctggagtatctccactgtcattgcaacattcgcattgtgcattttgatatcaaacctcaaaacattctactggctcaagatttctgtccaaagatctctgattttggcctgtcaaaattgtgccatctaaaggagagcagaatttcgatcaacggactaagaggaacacctggctacattgcacctgaagtgttttccaggcagtatggatctgccagcagcaaatctgatgtctacagctatggaatggtggtccttgagatggctggtgcaaagaaaaacatcaacgttagtacaggtagtagcagcaaatattttccccaatggttatacgataatttggaccagttttgttgccccacgggcgagattagtagccagaccaccgatcttgtaaggaagatggttgtcgttggtttgtggtgcatacaactcgtacctacagatcgaccgtccatgagagaagtccttgagatgttggaaagcaacggtagggacttaccgttgccaccaaaagggctttga
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| CDS seq | atgactaaatcttttgctcacaagcttggcagaggtggctttggtactgtttataaaggtagcctgcctgatggccgtgagatagccgtcaagatgctaaaggataccaagggtgatggggaggaattcataaatgaggttgctggcattagtaaaacttctcatatcaatgttgttaaccttctaggtttttcccttcaagggtcaaaaagagctctgatctatgagtacatgcccaatggttcacttgatagatattcttttggcgatagctctgtccaaggagataacaccctgagctgggatagactgttcaatattattgtcgggattgctcgagggctggagtatctccactgtcattgcaacattcgcattgtgcattttgatatcaaacctcaaaacattctactggctcaagatttctgtccaaagatctctgattttggcctgtcaaaattgtgccatctaaaggagagcagaatttcgatcaacggactaagaggaacacctggctacattgcacctgaagtgttttccaggcagtatggatctgccagcagcaaatctgatgtctacagctatggaatggtggtccttgagatggctggtgcaaagaaaaacatcaacgttagtacaggtagtagcagcaaatattttccccaatggttatacgataatttggaccagttttgttgccccacgggcgagattagtagccagaccaccgatcttgtaaggaagatggttgtcgttggtttgtggtgcatacaactcgtacctacagatcgaccgtccatgagagaagtccttgagatgttggaaagcaacggtagggacttaccgttgccaccaaaagggctttga
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| Protein seq | MTKSFAHKLGRGGFGTVYKGSLPDGREIAVKMLKDTKGDGEEFINEVAGISKTSHINVVNLLGFSLQGSKRALIYEYMPNGSLDRYSFGDSSVQGDNTLSWDRLFNIIVGIARGLEYLHCHCNIRIVHFDIKPQNILLAQDFCPKISDFGLSKLCHLKESRISINGLRGTPGYIAPEVFSRQYGSASSKSDVYSYGMVVLEMAGAKKNINVSTGSSSKYFPQWLYDNLDQFCCPTGEISSQTTDLVRKMVVVGLWCIQLVPTDRPSMREVLEMLESNGRDLPLPPKGL |
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| Function | Protein SUPPRESSOR OF NPR1-1 CONSTITUTIVE 4 [UniProtKB/Swiss-Prot:D7SFH9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0011770 | OsLima_12g0011770.01 | Chr12 | 15114626 | 15115492 | + | NAM | ||
| CDS seq | atgactaaatcttttgctcacaagcttggcagaggtggctttggtactgtttataaaggtagcctgcctgatggccgtgagatagccgtcaagatgctaaaggataccaagggtgatggggaggaattcataaatgaggttgctggcattagtaaaacttctcatatcaatgttgttaaccttctaggtttttcccttcaagggtcaaaaagagctctgatctatgagtacatgcccaatggttcacttgatagatattcttttggcgatagctctgtccaaggagataacaccctgagctgggatagactgttcaatattattgtcgggattgctcgagggctggagtatctccactgtcattgcaacattcgcattgtgcattttgatatcaaacctcaaaacattctactggctcaagatttctgtccaaagatctctgattttggcctgtcaaaattgtgccatctaaaggagagcagaatttcgatcaacggactaagaggaacacctggctacattgcacctgaagtgttttccaggcagtatggatctgccagcagcaaatctgatgtctacagctatggaatggtggtccttgagatggctggtgcaaagaaaaacatcaacgttagtacaggtagtagcagcaaatattttccccaatggttatacgataatttggaccagttttgttgccccacgggcgagattagtagccagaccaccgatcttgtaaggaagatggttgtcgttggtttgtggtgcatacaactcgtacctacagatcgaccgtccatgagagaagtccttgagatgttggaaagcaacggtagggacttaccgttgccaccaaaagggctttga
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| Protein seq | MTKSFAHKLGRGGFGTVYKGSLPDGREIAVKMLKDTKGDGEEFINEVAGISKTSHINVVNLLGFSLQGSKRALIYEYMPNGSLDRYSFGDSSVQGDNTLSWDRLFNIIVGIARGLEYLHCHCNIRIVHFDIKPQNILLAQDFCPKISDFGLSKLCHLKESRISINGLRGTPGYIAPEVFSRQYGSASSKSDVYSYGMVVLEMAGAKKNINVSTGSSSKYFPQWLYDNLDQFCCPTGEISSQTTDLVRKMVVVGLWCIQLVPTDRPSMREVLEMLESNGRDLPLPPKGL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0130300 | SBH | 0.0 | 0.0 | 0.260378 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g26940 | SBH | 0.0 | 0.0 | 0.044357 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0130300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0012150 | RBH | 0.0 | 10.072243 | 1.443616 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0012270 | RBH | 0.0 | 1.723534 | 0.686837 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0005390 | SBH | 0.0 | 0.807486 | 0.479606 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0011990 | RBH | 0.0 | 0.031539 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0005310 | SBH | 0.0 | 1.245630 | 1.206069 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0217000 | RBH | 1.7795755 | 7.08333 | 0.6181425 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0020030 | SBH | 0.045894 | 0.034146 | 0.225106 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0015200 | SBH | 1.617323 | 0.890693 | 1.779883 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0012150 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0005310 | SBH | 0.0 | 4.570574 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0011950 | RBH | 0.0 | 0.0 | 0.624246 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0020360 | SBH | 0.483095 | 0.457500 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G011900 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0011720 | RBH | 0.0 | 6.215492 | 3.428627 |
