Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0008730 | OGI:12026680 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:9158569-9160482 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcacagcatctcaagcccgccaccgtgataatagcttccaaattcaaaccccttcaggcaccggatttgttgactgctgatgataagcctctcctcgggggcatgctgtgaattcaacttgatcaagagttcctcctgtttaatgctacaaacccatagcgaaagatgagtgagattagcaagacacgccatctgctctgggatatgactaatacgcactctgtatatgaccatcttccggagtgtcggaatagtgtgttgagttgtgatccaaattcatttgcatttaataaaggccaacttctgtcgtaacggagcggaggcgccgtgcacctgggtacgcccgggggtgcgggggcgGAgcccccgtgaaacggatcgtcatcccttctagggttccaccatatatatacctcttgtaagccgccgtgcggcgttgtaacctcaccccagatatagtgaagatattttgctggctggcgcccgtggttttttctctcctgttttgggagggttttccacgctaaaatctcgtgtcttctgtgattgatctactgttttttatcgtttgtttgcctatcgtttcctaacacagtgcagcacaatatgtccatcagttttcctctcaggaatccattgcagccaatgtgtagtgactgaagcgcatgctcacccatcatagcgagagatgacttcaaagattcttcgtaattttcggtgttgtgatcaccaagtttgttgctgtcatgcagcattatgcgaagcacacttagcctggtcaaccgcctcaactcttgcacaaattttatggagtcatattttccagcatctgatagctcctgtaaggcttgtagatccccaatctcatttggcaattcTACAtcattgccaacaagtagacgcgctaaattttgcaaacgacctatggtcggtggcaattttttaattccactacggcgtatatctagtgtctgcaaatacttcaggtccccaatttgctctggaagctcagtaataccatcagaactaatgctcaaatatgccagccggaagaagctctcaagatgtttaatgtgttgtgtaccgataccatggcaattttcaaataccagtactctcaaacaatgaagtgtttgcagatcaggtcccacatcttgtacaccatagtagttcagtgaacgaagctgtgaacacttacccataatctcctgcatcgctttattgcccagacagttggattggacagatcagggtttacgattccgacaggccctttcgtttcgggcactggcggaattcggaatttcgcgaaattcgatggaaaaccggtaaattctgaacaaatttcataaaccaaaatttaaatacaaattccctgagtttgccgacaagttctcgaaaaccggtcggtttgggtgaaattccgatcgaaatcattgaaatttcgatcagtaatcttgcccatgtaagtgctttccttttttaaattctttattattttctttcatatgtaagtttcagtaaatacatacaatacatcatttttttcaaaaatttatatcccaataggttgtatgaatatcatagtatttataagattttaTttgattttttttctttttttatcaattcaaatttgaatttggatgaaactcctcgaaatctcatacggtttctactttcgagccttgttgaaacgtcgaaatttcgcgaaatctgaccggatttcgtcagaatcgtaaaccctgggacagatagcctacgaatcttgttagaacaattgtacccttccccttgcattagagtggtaaaattctcctccttcgacagggatacgataagatcaaggatcatgtcatgcactcgacaagcactcgctctgccatcatactggatgtcaattggttggatcat
More
|
||||||||||
| CDS seq | atgatccaaccaattgacatccagtatgatggcagagcgagtgcttgtcgagtgcatgacatgatccttgatcttatccttcgttcactgaactactatggtgtacaagatgtgggacctgatctgcaaacacttcattgtttgagagtactggtatttgaaaattgccatggtatcggtacacaacacattaaacatcttgagagcttcttccggctggcatatttgagcattagttctgatggtattactgagcttccagagcaaattggggacctgaagtatttgcagacactagatatacgccgtagtggaattaaaaaattgccaccgaccataggtcgtttgcaaaatttagcgcgtctacttgttggcaatgaTGTAgaattgccaaatgagattggggatctacaagccttacaggagctatcagatgctggaaaatatgactccataaaatttgtgcaagagttgaggcggttgaccaggctaagtgtgcttcgcataatgctgcatgacagcaacaaacttggtgatcacaacaccgaaaattacgaagaatctttgaagtcatctctcgctatgatgggtgagcatgcgcttcacattaaacaggaggaactcttgatcaagttgaattcacagcatgcccccgaggagaggcttatcatcagcagtcaacaaatccggtgcctgaaggggtttgaatttggaagctattatcacggtggcgggcttgagatgctgtga
More
|
||||||||||
| Protein seq | MIQPIDIQYDGRASACRVHDMILDLILRSLNYYGVQDVGPDLQTLHCLRVLVFENCHGIGTQHIKHLESFFRLAYLSISSDGITELPEQIGDLKYLQTLDIRRSGIKKLPPTIGRLQNLARLLVGNDVELPNEIGDLQALQELSDAGKYDSIKFVQELRRLTRLSVLRIMLHDSNKLGDHNTENYEESLKSSLAMMGEHALHIKQEELLIKLNSQHAPEERLIISSQQIRCLKGFEFGSYYHGGGLEML |
||||||||||
| Function | Disease resistance protein PIK5-NP [UniProtKB/Swiss-Prot:Q2QZF2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0008730 | OsLima_12g0008730.01 | Chr12 | 9158569 | 9160482 | - | NAM | ||
| CDS seq | atgatccaaccaattgacatccagtatgatggcagagcgagtgcttgtcgagtgcatgacatgatccttgatcttatccttcgttcactgaactactatggtgtacaagatgtgggacctgatctgcaaacacttcattgtttgagagtactggtatttgaaaattgccatggtatcggtacacaacacattaaacatcttgagagcttcttccggctggcatatttgagcattagttctgatggtattactgagcttccagagcaaattggggacctgaagtatttgcagacactagatatacgccgtagtggaattaaaaaattgccaccgaccataggtcgtttgcaaaatttagcgcgtctacttgttggcaatgaTGTAgaattgccaaatgagattggggatctacaagccttacaggagctatcagatgctggaaaatatgactccataaaatttgtgcaagagttgaggcggttgaccaggctaagtgtgcttcgcataatgctgcatgacagcaacaaacttggtgatcacaacaccgaaaattacgaagaatctttgaagtcatctctcgctatgatgggtgagcatgcgcttcacattaaacaggaggaactcttgatcaagttgaattcacagcatgcccccgaggagaggcttatcatcagcagtcaacaaatccggtgcctgaaggggtttgaatttggaagctattatcacggtggcgggcttgagatgctgtga
More
|
|||||||
| Protein seq | MIQPIDIQYDGRASACRVHDMILDLILRSLNYYGVQDVGPDLQTLHCLRVLVFENCHGIGTQHIKHLESFFRLAYLSISSDGITELPEQIGDLKYLQTLDIRRSGIKKLPPTIGRLQNLARLLVGNDVELPNEIGDLQALQELSDAGKYDSIKFVQELRRLTRLSVLRIMLHDSNKLGDHNTENYEESLKSSLAMMGEHALHIKQEELLIKLNSQHAPEERLIISSQQIRCLKGFEFGSYYHGGGLEML
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0273300 | SBH | 0.314198 | 0.544434 | 0.288455 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g17340 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0273300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0009010 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0009160 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0009130 | SBH | 0.199454 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0008970 | SBH | 0.073606 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0008780 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0137800 | SBH | 0.0730815 | 1.0353395 | 0.643265 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0008810 | SBH | 0.340753 | 0.000000 | 0.710993 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0151400 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0009000 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0008930 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0008910 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0009030 | SBH | 0.235259 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G008820 | RBH | 0.333200 | 1.206500 | 0.120301 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0008750 | RBH | 0.0 | 0.0 | 0.750651 |
