Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0006620 | OGI:12015310 | 6/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:5620241-5624088 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgtctgctaagtcaccatcacttggaatcccttcacctccagttggaattttcgctcaggtaatctgttatgctcttttgtacatagtcattgatgctgtttcttgtttacgtatagcatgaaaaataagatgttatttttcagatactttgaagtattaatatatttctgttccatgtttgacactagcaagttgtcgtctttagagggtgcatcttacatagagtatgtctgcaatgaaaatctgaatgtgtgaacttaatcgtcttcaattacatattgtgttgatagtgtgtcattcttatcttactgcagaaggaataagtcatttcagtgggtagatcagggataaatactgaatcagtaaagattattttaaaaatggaggcttttggagaggtcagtttacttgacatcatacattcatactatcataggcatttcaaacttccaatgttctcatttggattagtaatacaactgcttgtgagcacaatgcacataaaatacgtgttaaaatttcacattagtatgtatattttccttgaaaagtagttgattttgaatattaaacagaagaagatgctccgctggcctacctgagggtgttgttgaggaggaggggctcttggaccgtccagtcacaaagtttggtgcataaagcaatgtgtcagtcaggtatgcactactgcatagcattgtgttagtactttcgttgtcaatagctttaaatgggttcaaaacatttggatgaaataagttgtttagaaacccataatattagtagattacaaaatgtggttcatttgtaaaacttaacatcaataatgtatataatgttgcgttaaaggaataactgactgcacatgctattgtgatgaaaaggtcgtcttagagaggtagctgaactacagtaaaagtaatgtgtgcttaacaagcttgatctttgtatccacttcaattggtatgacatgctgcaacacacatagcactttttaagAaaagaacatttgatgtaaacaactagctgaagggttgtgcctcctctgttcctttattattgctcaggtatccaatactccatttgatggaatatagaagcctgatttagtgtcacgagcaaattaccttctcgatgttgctctagggacaaagaatatcaactacaaaattcctatttgcagtgtctacaaagtagcatctgaaaaggtcggtcatgcaaactgctgtagttggtaaaatgggtgctctacctaccatatttatttggaagatttcccaggaaatgcatgggcagtttcatattttgcaaatattgaatgtctagccattccaggcaagacaaaattcagtaaaccAactgttgatgtacaggagaatgctcagggaaggtcttgcttaatgaacaaatgttccacgtccacttccatctttttttggtttggattcaagaggacaaatgattcgtctgatcgacctatctctatcttgaattccatggagatctaccaatacaagatggtaaggcaattgtatgtctgtgtgttttagaatagatgaaaagaaaaatcacctgttctcttctaattctgttttgtggtaaatattaacagcaagcaccatgtccatcttggtctcacggtactctcaatcgggttgggtgaaagagggtggtgacctttgcttacgagcatgatggtcttgggtgcaatgcagttcagaggcaagaccccagatactttcaatgtataatggtcatgtcatctgccttctcttaatgtggttttctggtcaacatttgaagtatttgaaatctaaggattattttttccagcatattattagggaagaacattaaaggaaattaatgaggctatcgaggcttgtaaaatttaagctcagaatgttaattatttcctctcctctgctaatagttgtattttatctgatctacataattgttttttttcaaattcagaagtactgatggtagctcattatctggtcaaaatcctgatttcactgggtgcggtactgctgtgatttacagtatatgtgtgctcccattattttgtatactttggaaattttattcttcttgtttactccttaggatgctttcctctgaactgcagtcaccttgagacaatcaattaattgactggtgcattgcgaacctctttGggagacctaccttacctggaaggctggagtgttgtaagctctactcttcagtgcactttgttaccattggcagttgtatagtattttgggaatattggcagtagtatagtattactgtttgtgttgtagttggggccatattggttcttgttgctaacattggatattacattcttacgtgctcatcagatggtgtgttttctttagctcattggacttatcaagtttgatttgcatgtagcaattgatttgcatccccagaatctgttgttattgtggcagcagcgaaaaaagttaggctcgtattttagtgaagtggacacagaatcaatgcacaagaaagatgaattgacagacagctaatagaaatgttggtagggagcaaagcaatattttcggcatgcatattgggatgaatatctttgtagcttaataagatttaccttttttgttgcaaagtagggagcaaagcaaattgttgaaaatgcgagttcccttgcacatcagaagcacaatttatatcctattcaaatcaccatggctaagatactttacatcctcacatgattacgcaacttcttgctaatgtaggttgtccctgttggggatggAaatattgttcaagttatcagcaggctatacgttattcccgataacccaaaagaatcctcagcagtgaagagattctggtaagcaactatctttgttgatcactgataaatctgtgcagatacatatccctatgtgctgtgacttgtaCtttttttgccgggtcgaccaaaggaaccggcgaccaaatttcatcaagataggggaaaaaatagagttacaaagagtttcttgcttataatgacagtaggctgtcgaattggtgctgtggcaaagccgcagtccccacaagctaggaacaactacaacaccgcagctggaaaattaagagttacatactgtgaaatagccagcttctttccacaccacaatcttttcttttatagcttccactagctggtcagggcttctggattgttgatcaaatacccgtgcattgcgttccttccatatctgccagcaaatcagcaagcaagcgcggtcgaagttggtcctgtagcacttccgaaaacagagtctgacctgcatccaccagtctgccaggccaaggtcttccatcccactgctgtgacttgtactaaaatagcactgagtttggtgatacatcgtattacattatcattattttgcacatcattggcattgtactgaactacctgtatacaacttcagtcaaaatgcacatgttcatatagccaatttgcaatacaatttacaagctcaatttgcagttccctgatccccatccaagtgcaagccctaatcatgtcttttttctcatacagctttttttttttttgaaacggttcatacaactatttttgaattggaaactttatactgatctgaaaacttccacatggcttttgaacattgttttcctgatcacaggggactcactggtcaacttgttgacctttcaaggccaggagacttcaaccaaacaatgatggaactaggagaaacactctgcagcaaggtgaagcttggttgctcccagtgccccgtctctagccattgccaagcgctcgcactttctagccaaaatgcttaa
More
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| CDS seq | atgtctgctaagtcaccatcacttggaatcccttcacctccagttggaattttcgctcaggttgtccctgttggggatggAaatattgttcaagttatcagcaggctatacgttattcccgataacccaaaagaatcctcagcagtgaagagattctggggactcactggtcaacttgttgacctttcaaggccaggagacttcaaccaaacaatgatggaactaggagaaacactctgcagcaaggtgaagcttggttgctcccagtgccccgtctctagccattgccaagcgctcgcactttctagccaaaatgcttaa |
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| Protein seq | MSAKSPSLGIPSPPVGIFAQVVPVGDGNIVQVISRLYVIPDNPKESSAVKRFWGLTGQLVDLSRPGDFNQTMMELGETLCSKVKLGCSQCPVSSHCQALALSSQNA |
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| Function | Adenine DNA glycosylase [UniProtKB/Swiss-Prot:F4JRF4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0006620 | OsLima_12g0006620.01 | Chr12 | 5620241 | 5624088 | + | NAM | ||
| CDS seq | atgtctgctaagtcaccatcacttggaatcccttcacctccagttggaattttcgctcaggttgtccctgttggggatggAaatattgttcaagttatcagcaggctatacgttattcccgataacccaaaagaatcctcagcagtgaagagattctggggactcactggtcaacttgttgacctttcaaggccaggagacttcaaccaaacaatgatggaactaggagaaacactctgcagcaaggtgaagcttggttgctcccagtgccccgtctctagccattgccaagcgctcgcactttctagccaaaatgcttaa
More
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| Protein seq | MSAKSPSLGIPSPPVGIFAQVVPVGDGNIVQVISRLYVIPDNPKESSAVKRFWGLTGQLVDLSRPGDFNQTMMELGETLCSKVKLGCSQCPVSSHCQALALSSQNA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0211400 | SBH | 0.0 | 0.0 | 0.393080 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g10850 | SBH | 0.0 | 0.0 | 0.095156 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0211400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0006910 | SBH | 0.000000 | 1.873041 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0007000 | SBH | 0.000000 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0007000 | SBH | 0.000000 | 3.177404 | 0.472589 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0006920 | SBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0006750 | RBH | 0.000000 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0087600 | SBH | 0 | 0.1908285 | 0.200789 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0006730 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0093600 | SBH | 0.750132 | 0 | 8.6446145 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0006660 | SBH | 0.034143 | 0.031982 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0006900 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0006750 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0006780 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0006690 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G006790 | SBH | 0.000000 | 0.000000 | 0.253278 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0006800 | SBH | 0.0 | 0.0 | 0.0 |
