Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLiXu_12g0006780 OGI:12015310 | 6/16 LIU XU | Os125827RS1 | Gramene(+IsoSeq) Chr12:5547749-5551596
Gene Symbol -
DNA seq

atgtctgctaagtcaccatcacttggaatcccttcacctccagttggaattttcgctcaggtaatctgttatgctcttttgtacatagtcattgatgctgtttcttgtttacgtatagcatgaaaaataagatgttatttttcagatactttgaagtattaatatatttctgttccatgtttgacactagcaagttgtcgtctttagagggtgcatcttacatagagtatgtctgcaatgaaaatctgaatgtgtgaacttaatcgtcttcaattacatattgtgttgatagtgtgtcattcttatcttactgcagaaggaataagtcatttcagtgggtagatcagggataaatactgaatcagtaaagattattttaaaaatggaggcttttggagaggtcagtttacttgacatcatacattcatactatcataggcatttcaaacttccaatgttctcatttggattagtaatacaactgcttgtgagcacaatgcacataaaatacgtgttaaaatttcacattagtatgtatattttccttgaaaagtagttgattttgaatattaaacagaagaagatgctccgctggcctacctgagggtgttgttgaggaggaggggctcttggaccgtccagtcacaaagtttggtgcataaagcaatgtgtcagtcaggtatgcactactgcatagcattgtgttagtactttcgttgtcaatagctttaaatgggttcaaaacatttggatgaaataagttgtttagaaacccataatattagtagattacaaaatgtggttcatttgtaaaacttaacatcaataatgtatataatgttgcgttaaaggaataactgactgcacatgctattgtgatgaaaaggtcgtcttagagaggtagctgaactacagtaaaagtaatgtgtgcttaacaagcttgatctttgtatccacttcaattggtatgacatgctgcaacacacatagcactttttaagaaaagaacatttgatgtaaacaactagctgaagggttgtgcctcctctgttcctttattattgctcaggtatccaatactccatttgatggaatatagaagcctgatttagtgtcacgagcaaattaccttctcgatgttgctctagggacaaagaatatcaactacaaaattcctatttgcagtgtctacaaagtagcatctgaaaaggtcggtcatgcaaactgctgtagttggtaaaatgggtgctctacctaccatatttatttggaagatttcccaggaaatgcatgggcagtttcatattttgcaaatattgaatgtctagccattccaggcaagacaaaattcagtaaaccaactgttgatgtacaggagaatgctcagggaaggtcttgcttaatgaacaaatgttccacgtccacttccatctttttttggtttggattcaagaggacaaatgattcgtctgatcgacctatctctatcttgaattccatggagatctaccaatacaagatggtaaggcaattgtatgtctgtgtgttttagaatagatgaaaagaaaaatcacctgttctcttctaattctgttttgtggtaaatattaacagcaagcaccatgtccatcttggtctcacggtactctcaatcgggttgggtgaaagagggtggtgacctttgcttacgagcatgatggtcttgggtgcaatgcagttcagaggcaagaccccagatactttcaatgtataatggtcatgtcatctgccttctcttaatgtggttttctggtcaacatttgaagtatttgaaatctaaggattattttttccagcatattattagggaagaacattaaaggaaattaatgaggctatcgaggcttgtaaaatttaagctcagaatgttaattatttcctctcctctgctaatagttgtattttatctgatctacataattgttttttttcaaattcagaagtactgatggtagctcattatctggtcaaaatcctgatttcactgggtgcggtactgctgtgatttacagtatatgtgtgctcccattattttgtatactttggaaattttattcttcttgtttactccttaggatgctttcctctgaactgcagtcaccttgagacaatcaattaattgactggtgcattgcgaacctctttgggagacctaccttacctggaaggctggagtgttgtaagctctactcttcagtgcactttgttaccattggcagttgtatagtattttgggaatattggcagtagtatagtattactgtttgtgttgtagttggggccatattggttcttgttgctaacattggatattacattcttacgtgctcatcagatggtgtgttttctttagctcattggacttatcaagtttgatttgcatgtagcaattgatttgcatccccagaatctgttgttattgtggcagcagcgaaaaaagttaggctcgtattttagtgaagtggacacagaatcaatgcacaagaaagatgaattgacagacagctaatagaaatgttggtagggagcaaagcaatattttcggcatgcatattgggatgaatatctttgtagcttaataagatttaccttttttgttgcaaagtagggagcaaagcaaattgttgaaaatgcgagttcccttgcacatcagaagcacaatttatatcctattcaaatcaccatggctaagatactttacatcctcacatgattacgcaacttcttgctaatgtaggttgtccctgttggggatggaaatattgttcaagttatcagcaggctatacgttattcccgataacccaaaagaatcctcagcagtgaagagattctggtaagcaactatctttgttgatcactgataaatctgtgcagatacatatccctatgtgctgtgacttgtactttttttgccgggtcgaccaaaggaaccggcgaccaaatttcatcaagataggggaaaaaatagagttacaaagagtttcttgcttataatgacagtaggctgtcgaattggtgctgtggcaaagccgcagtccccacaagctaggaacaactacaacaccgcagctggaaaattaagagttacatactgtgaaatagccagcttctttccacaccacaatcttttcttttatagcttccactagctggtcagggcttctggattgttgatcaaatacccgtgcattgcgttccttccatatctgccagcaaatcagcaagcaagcgcggtcgaagttggtcctgtagcacttccgaaaacagagtctgacctgcatccaccagtctgccaggccaaggtcttccatcccactgctgtgacttgtactaaaatagcactgagtttggtgatacatcgtattacattatcattattttgcacatcattggcattgtactgaactacctgtatacaacttcagtcaaaatgcacatgttcatatagccaatttgcaatacaatttacaagctcaatttgcagttccctgatccccatccaagtgcaagccctaatcatgtcttttttctcatacagctttttttttttttgaaacggttcatacaactatttttgaattggaaactttatactgatctgaaaacttccacatggcttttgaacattgttttcctgatcacaggggactcactggtcaacttgttgacctttcaaggccaggagacttcaaccaaacaatgatggaactaggagaaacactctgcagcaaggtgaagcttggttgctcccagtgccccgtctctagccattgccaagcgctcgcactttctagccaaaatgcttaa

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CDS seq

atgtctgctaagtcaccatcacttggaatcccttcacctccagttggaattttcgctcaggttgtccctgttggggatggaaatattgttcaagttatcagcaggctatacgttattcccgataacccaaaagaatcctcagcagtgaagagattctggggactcactggtcaacttgttgacctttcaaggccaggagacttcaaccaaacaatgatggaactaggagaaacactctgcagcaaggtgaagcttggttgctcccagtgccccgtctctagccattgccaagcgctcgcactttctagccaaaatgcttaa

Protein seq

MSAKSPSLGIPSPPVGIFAQVVPVGDGNIVQVISRLYVIPDNPKESSAVKRFWGLTGQLVDLSRPGDFNQTMMELGETLCSKVKLGCSQCPVSSHCQALALSSQNA

Function Adenine DNA glycosylase [UniProtKB/Swiss-Prot:F4JRF4]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLiXu_12g0006780 OsLiXu_12g0006780.01 Chr12 5547749 5551596 + NAM
CDS seq

atgtctgctaagtcaccatcacttggaatcccttcacctccagttggaattttcgctcaggttgtccctgttggggatggaaatattgttcaagttatcagcaggctatacgttattcccgataacccaaaagaatcctcagcagtgaagagattctggggactcactggtcaacttgttgacctttcaaggccaggagacttcaaccaaacaatgatggaactaggagaaacactctgcagcaaggtgaagcttggttgctcccagtgccccgtctctagccattgccaagcgctcgcactttctagccaaaatgcttaa

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Protein seq

MSAKSPSLGIPSPPVGIFAQVVPVGDGNIVQVISRLYVIPDNPKESSAVKRFWGLTGQLVDLSRPGDFNQTMMELGETLCSKVKLGCSQCPVSSHCQALALSSQNA

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 0.0

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_12g0211400 SBH 0.0 0.0 0.393080
Nipponbare | IRGSP 1.0 | MSU LOC_Os12g10850 SBH 0.0 0.0 0.095156
Nipponbare | IRGSP 1.0 | RAP-db Os12g0211400 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_12g0006910 SBH 0.000000 1.873041 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_12g0007000 SBH 0.000000 0.0 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_12g0007000 SBH 0.000000 3.177404 0.472589
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_12g0006920 SBH 0.0 0.000000 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_12g0006750 RBH 0.000000 0.0 0.0
Minghui 63 | MH63RS3 | HZAU OsMH63_12G0087600 SBH 0 0.1908285 0.200789
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_12g0006730 RBH 0.0 0.0 0.000000
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_12G0093600 SBH 0.750132 0 8.6446145
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_12g0006620 RBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_12g0006900 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_12g0006750 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_12g0006830 RBH 0.0 0.0 0.000000
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_12g0006690 SBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_12G006790 SBH 0.000000 0.000000 0.253278
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_12g0006800 SBH 0.0 0.0 0.0
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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