Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0006260 | OGI:12013940 | 10/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:5133135-5135121 | ||||||||
| Gene Symbol | PGL12 | ||||||||||
| DNA seq | atggcgatggcgtcctcctccctcgccgccgcaaaccaccccctcctcccctccaagccgctctcctcccccaagcccctcacccgcgcgaggcccctctcccgcgcgctccacgccggcgccgccgcggccgcgcggggcgcttcgtcgtcgtcgtcgcaggcggagctccggcctgactccaagaacgcgcccgcgctgtccgcggagctccggaggctggcgcgcgtcgggaggctcccctccgcgctcgccctcctcgaccacctctcccaccgcggcgtccccgccacggcctcggccttcgccgcgctgctcaccgcgtgccggtcgctcgcccacgcgcgccaggtccacgcgcacctccgcgtccacggcctcgactccaacgagttcctgctcgcgaggctcgtcgagctctacctcgcgctcggcgcccgggaggatgcgcgcaaggtgctcgacgggttgccccgggcgagctccttctcgtggaacgcgctcctccacgggcacgtgcgccggggacgcggccaggcgggcggcgccgtcgcggacgggttcgcagagatgcgtgccgcgggcgccgacgccaacgagtacacgtacgggtgcgtcctcaagtccatctccgggagtgccgcgccgtccatggccatggccaccgccacgcacgcgatgctgatcaagaacgcctacgcgggcgctCccaggatgctcatgacggggctcatggacttgtacttcaagtgcgggaaggtgaagcctgcggttatggtgttcgaggaaatgccagagagggatgtggttgcgtggggtgcagtgattgccgggtttgcgcataaggggatgaagagggaggcactggagcatttccggtggatggtggaggatgggatcaaggtgaactctgtggtgctcacgtcagttgtgcccgtcattggcgagttgcgtgcgcggaacttgggtagggagatccatggttttgtgctgaagaagttccaacatcgtaaggatgttggaaacattcaggcagggttggtagatatgtactgcaagtgtggcgatatggtctctgggagacgggtgttctatagcgctaagaagaggaatgttgtctcatggacggcactgatgtctggctatgcatgcaatggcaggcctgaccaggcgctgaggtgcatactttggatgcaacaagaaggaatcagaccggatcttatagccgtggggactgtgctcccagtatgtacgaagttgaaagcattgagggaagggaaagagcttcacgcgtatgccttgcggaggtggttcctgccaaatgtttccttgtgcacttcgctgatcactatgtatggtacgtgcagtcactcggattactctcagcgggtgttccatgtcatggacaagaagactgtacaagcttggacagcattggtcgatgcgtacctaaagaatggtgatccttcaactgctgttgatgtgttcagatcaatgctgctctcaaaccgccggcctgatgctgttgcaatcagcaggatgttgagtgcctgccgtgacattggggcatcaaaacttggcaaggaattgcatggtcaagcgttaaagttgcggatggaacctctccccctagttgcagcagggctagttagcatgtatggcacatgtggagacctcaaggcagcgcaacgggttttcaaccggattgagtccaagggatcccttacttgcactgccataatagaagcttatgcaatcaaccatagacacaaggaggcactggaCTCTTTGCTTGGATGCTGTCAAACAGGTTTGTTCCAAATAATGGCACCTTTGATGTGTTGCTGAGAATCTGTGAAGCGGCAGGGTTGCATGATGAAGCTCTTCAGATTTTCAACTCCATGGTGCAAGAATACAATCTGGAAGCGTCTGAACATAATTTTGACTGCATTATACGGCTTCTCACTGCTGCAGACAGGACTTCTGA
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| CDS seq | atggcgatggcgtcctcctccctcgccgccgcaaaccaccccctcctcccctccaagccgctctcctcccccaagcccctcacccgcgcgaggcccctctcccgcgcgctccacgccggcgccgccgcggccgcgcggggcgcttcgtcgtcgtcgtcgcaggcggagctccggcctgactccaagaacgcgcccgcgctgtccgcggagctccggaggctggcgcgcgtcgggaggctcccctccgcgctcgccctcctcgaccacctctcccaccgcggcgtccccgccacggcctcggccttcgccgcgctgctcaccgcgtgccggtcgctcgcccacgcgcgccaggtccacgcgcacctccgcgtccacggcctcgactccaacgagttcctgctcgcgaggctcgtcgagctctacctcgcgctcggcgcccgggaggatgcgcgcaaggtgctcgacgggttgccccgggcgagctccttctcgtggaacgcgctcctccacgggcacgtgcgccggggacgcggccaggcgggcggcgccgtcgcggacgggttcgcagagatgcgtgccgcgggcgccgacgccaacgagtacacgtacgggtgcgtcctcaagtccatctccgggagtgccgcgccgtccatggccatggccaccgccacgcacgcgatgctgatcaagaacgcctacgcgggcgctCccaggatgctcatgacggggctcatggacttgtacttcaagtgcgggaaggtgaagcctgcggttatggtgttcgaggaaatgccagagagggatgtggttgcgtggggtgcagtgattgccgggtttgcgcataaggggatgaagagggaggcactggagcatttccggtggatggtggaggatgggatcaaggtgaactctgtggtgctcacgtcagttgtgcccgtcattggcgagttgcgtgcgcggaacttgggtagggagatccatggttttgtgctgaagaagttccaacatcgtaaggatgttggaaacattcaggcagggttggtagatatgtactgcaagtgtggcgatatggtctctgggagacgggtgttctatagcgctaagaagaggaatgttgtctcatggacggcactgatgtctggctatgcatgcaatggcaggcctgaccaggcgctgaggtgcatactttggatgcaacaagaaggaatcagaccggatcttatagccgtggggactgtgctcccagtatgtacgaagttgaaagcattgagggaagggaaagagcttcacgcgtatgccttgcggaggtggttcctgccaaatgtttccttgtgcacttcgctgatcactatgtatggtacgtgcagtcactcggattactctcagcgggtgttccatgtcatggacaagaagactgtacaagcttggacagcattggtcgatgcgtacctaaagaatggtgatccttcaactgctgttgatgtgttcagatcaatgctgctctcaaaccgccggcctgatgctgttgcaatcagcaggatgttgagtgcctgccgtgacattggggcatcaaaacttggcaaggaattgcatggtcaagcgttaaagttgcggatggaacctctccccctagttgcagcagggctagttagcatACAGGACTTCTGA
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| Protein seq | MAMASSSLAAANHPLLPSKPLSSPKPLTRARPLSRALHAGAAAAARGASSSSSQAELRPDSKNAPALSAELRRLARVGRLPSALALLDHLSHRGVPATASAFAALLTACRSLAHARQVHAHLRVHGLDSNEFLLARLVELYLALGAREDARKVLDGLPRASSFSWNALLHGHVRRGRGQAGGAVADGFAEMRAAGADANEYTYGCVLKSISGSAAPSMAMATATHAMLIKNAYAGAPRMLMTGLMDLYFKCGKVKPAVMVFEEMPERDVVAWGAVIAGFAHKGMKREALEHFRWMVEDGIKVNSVVLTSVVPVIGELRARNLGREIHGFVLKKFQHRKDVGNIQAGLVDMYCKCGDMVSGRRVFYSAKKRNVVSWTALMSGYACNGRPDQALRCILWMQQEGIRPDLIAVGTVLPVCTKLKALREGKELHAYALRRWFLPNVSLCTSLITMYGTCSHSDYSQRVFHVMDKKTVQAWTALVDAYLKNGDPSTAVDVFRSMLLSNRRPDAVAISRMLSACRDIGASKLGKELHGQALKLRMEPLPLVAAGLVSIQDF |
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| Function | Pentatricopeptide repeat-containing protein At1g71460, chloroplastic [UniProtKB/Swiss-Prot:Q9C9I3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0006260 | OsLima_12g0006260.01 | Chr12 | 5133135 | 5135121 | + | NAM | ||
| CDS seq | atggcgatggcgtcctcctccctcgccgccgcaaaccaccccctcctcccctccaagccgctctcctcccccaagcccctcacccgcgcgaggcccctctcccgcgcgctccacgccggcgccgccgcggccgcgcggggcgcttcgtcgtcgtcgtcgcaggcggagctccggcctgactccaagaacgcgcccgcgctgtccgcggagctccggaggctggcgcgcgtcgggaggctcccctccgcgctcgccctcctcgaccacctctcccaccgcggcgtccccgccacggcctcggccttcgccgcgctgctcaccgcgtgccggtcgctcgcccacgcgcgccaggtccacgcgcacctccgcgtccacggcctcgactccaacgagttcctgctcgcgaggctcgtcgagctctacctcgcgctcggcgcccgggaggatgcgcgcaaggtgctcgacgggttgccccgggcgagctccttctcgtggaacgcgctcctccacgggcacgtgcgccggggacgcggccaggcgggcggcgccgtcgcggacgggttcgcagagatgcgtgccgcgggcgccgacgccaacgagtacacgtacgggtgcgtcctcaagtccatctccgggagtgccgcgccgtccatggccatggccaccgccacgcacgcgatgctgatcaagaacgcctacgcgggcgctCccaggatgctcatgacggggctcatggacttgtacttcaagtgcgggaaggtgaagcctgcggttatggtgttcgaggaaatgccagagagggatgtggttgcgtggggtgcagtgattgccgggtttgcgcataaggggatgaagagggaggcactggagcatttccggtggatggtggaggatgggatcaaggtgaactctgtggtgctcacgtcagttgtgcccgtcattggcgagttgcgtgcgcggaacttgggtagggagatccatggttttgtgctgaagaagttccaacatcgtaaggatgttggaaacattcaggcagggttggtagatatgtactgcaagtgtggcgatatggtctctgggagacgggtgttctatagcgctaagaagaggaatgttgtctcatggacggcactgatgtctggctatgcatgcaatggcaggcctgaccaggcgctgaggtgcatactttggatgcaacaagaaggaatcagaccggatcttatagccgtggggactgtgctcccagtatgtacgaagttgaaagcattgagggaagggaaagagcttcacgcgtatgccttgcggaggtggttcctgccaaatgtttccttgtgcacttcgctgatcactatgtatggtacgtgcagtcactcggattactctcagcgggtgttccatgtcatggacaagaagactgtacaagcttggacagcattggtcgatgcgtacctaaagaatggtgatccttcaactgctgttgatgtgttcagatcaatgctgctctcaaaccgccggcctgatgctgttgcaatcagcaggatgttgagtgcctgccgtgacattggggcatcaaaacttggcaaggaattgcatggtcaagcgttaaagttgcggatggaacctctccccctagttgcagcagggctagttagcatACAGGACTTCTGA
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| Protein seq | MAMASSSLAAANHPLLPSKPLSSPKPLTRARPLSRALHAGAAAAARGASSSSSQAELRPDSKNAPALSAELRRLARVGRLPSALALLDHLSHRGVPATASAFAALLTACRSLAHARQVHAHLRVHGLDSNEFLLARLVELYLALGAREDARKVLDGLPRASSFSWNALLHGHVRRGRGQAGGAVADGFAEMRAAGADANEYTYGCVLKSISGSAAPSMAMATATHAMLIKNAYAGAPRMLMTGLMDLYFKCGKVKPAVMVFEEMPERDVVAWGAVIAGFAHKGMKREALEHFRWMVEDGIKVNSVVLTSVVPVIGELRARNLGREIHGFVLKKFQHRKDVGNIQAGLVDMYCKCGDMVSGRRVFYSAKKRNVVSWTALMSGYACNGRPDQALRCILWMQQEGIRPDLIAVGTVLPVCTKLKALREGKELHAYALRRWFLPNVSLCTSLITMYGTCSHSDYSQRVFHVMDKKTVQAWTALVDAYLKNGDPSTAVDVFRSMLLSNRRPDAVAISRMLSACRDIGASKLGKELHGQALKLRMEPLPLVAAGLVSIQDF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.095533 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0552300 | SBH | 0.408677 | 0.000000 | 0.099885 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g10184 | RBH | 1.518049 | 1.338928 | 0.349247 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0202850 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0000560 | SBH | 0.0 | 0.0 | 0.713637 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0006490 | RBH | 0.281670 | 0.300223 | 2.661693 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0006490 | SBH | 1.573695 | 0.0 | 4.421052 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0000580 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0006390 | RBH | 15.110706 | 4.678991 | 15.416443 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0026600 | SBH | 1.3316675 | 2.752294 | 6.20309 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0006360 | RBH | 0.704809 | 0.000000 | 2.333386 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0086100 | SBH | 4.859437 | 6.4343505 | 8.962588 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0006510 | RBH | 0.745645 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0006370 | RBH | 2.797313 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0006390 | RBH | 1.186066 | 0.0 | 1.172717 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0006330 | RBH | 0.500176 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G004330 | SBH | 0.063475 | 0.718993 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0006400 | RBH | 1.288366 | 0.0 | 1.975222 |
