Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0005470 | OGI:12011300 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:4272153-4276224 | ||||||||
| Gene Symbol | SPL36, OsSPL36 | ||||||||||
| DNA seq | atatctggcttctaaattgttcagggatatatatcatagtctatctactgttctaccttaactatggCTctatttcactactattgttatatggaattgccgtgtacaaggtatgctaataaCcatgtgtgaatatatgatgatacagcatagataaacccattggtcattcattccaaaatagatatctgaatactaaattgatcagccatatcacaatctactactctaccttgaactatggtgctggtactatacaaggaccccgtatactgattgctgacatccacaaactaagcaaaatgatcaaactccattcagaacctacctaagctaccaaaacatatcatgccagatcactttgcgttgaatagcatcctcaagacggtgcgcatctttggtcgagcatctggagagagcgcaacacaagcgagggcgatgttcaggaccgacaacatctggctgtgaacagcagctgaagttcttgagaccctggtgtcaaggatctgctccctctgatcagggctgcctgaaagactcagagcccacttggctaactcgatgccatcactgaccgatggtttcccagtcaaaagctccagtaagattactccaaagctgtaaacgttgccagccatcgtcaacctcatcgtgtatgcatactctgcaacatagttcaacaaaatttagcttcagtataaatctcatctcatatagatctcggaaagcgtcaaatcattttgtgctagtgtactgaaggacaagatcatagaagctaggttttttattagatttgtcaaaagtaggagatgtgcttattttggagggaaatttaactatttgccactcttgtgacatggcaattaacgatttgcCAcaccctgtcaatgacatgtgggccctcatgtgtctatgacatgtgggcctagtggcaaatcattaagcaacatccgtaagagtggcaaatagttaaaagcccctaTtttggatgatactacaaatgtagtagacgacaacccatgggaaacaaagcaaatatgTtttctccagaaattctgaaaacaaaactagcataggagtgtagacaggattgtggtcaattgaagtatgcaggtaatgcaaacagaattgcctcaagtaaattacttgaaaacatagatatgaactataaatagatcaaatcaacagagaacagtaaataaccactatcagcagtttcagtttaactgcttaagTtgataattatgcactcaaattgaaccagaacagtccattacctggtggaatataaccaactgtaccagcaatggtcgaaaggctcccactgctcttcaaagtatcaacaattttgtaaagttcaacatctccaatctgaggctcattcattgacttcaagtggacagtccttgttgacagatcaagaagcagaactggctgagtgcacccatgaagaaatgtcagcccttgggctagcccaaaagctatgctataccgtgaaggccagtccagaacatctgatcttccagcatgaaggaaatcgaacaccgtgcccttgtgcacatgctcatagatgatgtatgcattgtcttctgtcaacacATaagccaatggcaccattacAttggaattgctcaacttcccaagtacctcaagttcatgagcaaccttcccttggctcccaatttggaatatcttgtcactgcaattaatctgttttaaagaataggttgagccattaggcatcacagccttatagtaagtgcagaaccttgttttcagaaaaatgttgctgtgattggagactgcttccattgctttcacgaaatcaattgcagaggtatggatactattcatagttatgaggtgaccattgatgattcgagcaacatcctcagttgatggtccttcatcttcaacacgataaattctcttagaatatgaaattgtaacaatagcagcaagcaagcacaatccaacaagagcaccagtaatggcaacgacgatgatgactgtattgtgtgtccttctcttaccacttgtaggggcgttgtcataatttcttgtaccatttgtaagatcgggatttccattggtagcaatatcaacatgttgacgaaatataggaatggacccagaaaggtgattataagaaagcactagttgcgtcaagctttctagctttgcaagtgaggccggcacctcaccatacaagttgttgtatgaaagatcaagaatctctagatcactcaataagtcaatatttgaaggaatagatccgctgagattgttgtggcttagattaagaacagtactcaatttggtcggcattgttgggatggtaccagtcaagatattattccccagattgagctcaattagagaagttaataaatggagtgaatctggaatggtgccgctgatcttgttgcgttgcaaattcaaaatggaaagctttggcagcttgccgatttctcttggtatccctccagtgaatgaattaccactaagattcaatgtgatcaggcttgtcaaattagaaaatacacttgggataggtccatccagattgttcatttggagtttaagaactaccagtttgtcaaggctgctgattgcatcaggcactggaccctgaaacttatttgatgccagattcagcaaagacaaactcttgcatctgccaagttccaatggtatgcttcccgtcaactgattgctatccagctcaagataagccaaggtcgatgcatcaccaatggtggccgggatggttccattgagagagttgcctccaccaagcctcaaccgatagagggtcggagacaagctgctagggatgggcccttcgagcttattgtgagtgagatcaacagtccacagtcccacaggactaagaatatcagagggaatcactccactaagttcgttgtaactcagatccagcatcttcacattcttggtgataccactagggatgaaaccggtaaaattgttctgattagctgcaaaccgagcaaggcttgcaacatttgacacactcacaggtatattgccactcagttgattacctgataagagcaaagtcttgagcttgggtaactttaagaactcatccggtacatcaccatttagattgttctgactaagatccagcatagtaagattttggtaattgaacaaagctattggaatgctaccactgaaattgttgatggacaacaccaattcctccaaagacggggtcatgcttgtaggaacatcaccagccaagttattgctactaagattcaagcttctcagcttgagcaaagaactcaactgggttctgacatcaccactgaaagaattgaaggacaagtcaagaacctcaagaaggggaaaaccagagaaattactaagaggcatggatagctggctgctgctgagattaagtgaccgcaatccagccttcatggagcaagaagaggtgaagaattgctctatcgaattggtgaaggaattcttagagagatcaaggatttgcaaggtgtcaagagagcatatggttgcaaatatggtggagttggacaaaccatacccagacaaagtaaggttggtcacaactgatatggaattggagctagaagagcaactcactccatcccatcggcatggattcgaatcgctcgtgttccacttggcactggcagtaaccaagccagaaagctccttcatgatcgatacctgagtcgtatttagcggtgccggcgccgacgcggcagtggcgaccatggacgaatcaagaaacaagaacaagaagaggagaacttgtaccagcagcagcaagaagccattgttgcgacagtaacaaggcctcctctccgccatggccacctgttcttggcctCccattgattcctgtatctccttcccttaatcccctccctttcctccctgatgaacttcactgcagtctcaaccaccacccaagaaaatcgattttttttcctctctttccctaggttttggggctctcggtgttcttggccatggctctcttctctcctcttcttgctcctcccagactcccagt
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| CDS seq | atggGaggccaagaacaggtggccatggcggagaggaggccttgttactgtcgcaacaatggcttcttgctgctgctggtacaagttctcctcttcttgttcttgtttcttgattcgtccatggtcgccactgccgcgtcggcgccggcaccgctaaatacgactcaggtatcgatcatgaaggagctttctggcttggttactgccagtgccaagtggaacacgagcgattcgaatccatgccgatgggatggagtgagttgctcttctagctccaattccatatcagttgtgaccaaccttactttgtctgggtatggtttgtccaactccaccatatttgcaaccatatgctctcttgacaccttgcaaatccttgatctctctaagaattccttcaccaattcgatagagcaattcttcacctcttcttgctccatgaaggctggattgcggtcacttaatctcagcagcagccagctatccatgcctcttagtaatttctctggttttccccttcttgaggttcttgacttgtccttcaattctttcagtggtgatgtcagaacccagttgagttctttgctcaagctgagaagcttgaatcttagtagcaataacttggctggtgatgttcctacaagcatgaccccgtctttggaggaattggtgttgtccatcaacaatttcagtggtagcattccaatagctttgttcaattaccaaaatcttactatgctggatcttagtcagaacaatctaaatggtgatgtaccggatgagttcttaaagttacccaagctcaagactttgctcttatcaggtaatcaactgagtggcaatatacctgtgagtgtgtcaaatgttgcaagccttgctcggtttgcagctaatcagaacaattttaccggtttcatccctagtggtatcaccaagaatgtgaagatgctggatctgagttacaacgaacttagtggagtgattccctctgatattcttagtcctgtgggactgtggactgttgatctcactcacaataagctcgaagggcccatccctagcagcttgtctccgaccctctatcggttgaggcttggtggaggcaactctctcaatggaaccatcccggccaccattggtgatgcatcgaccttggcttatcttgagctggatagcaatcagttgacgggaagcataccattggaacttggcagatgcaagagtttgtctttgctgaatctggcatcaaataagtttcagggtccagtgcctgatgcaatcagcagccttgacaaactggtagttcttaaactccaaatgaacaatctggatggacctatcccaagtgtattttctaatttgacaagcctgatcacattgaatcttagtggtaattcattcactggagggataccaagagaaatcggcaagctgccaaagctttccattttgaatttgcaacgcaacaagatcagcggcaccattccagattcactccatttattaacttctctaattgagctcaatctggggaataatatcttgactggtaccatcccaacaatgccgaccaaattgagtactgttcttaatctaagccacaacaatctcagcggatctattccttcaaatattgacttattgagtgatctagagattcttgatctttcatacaacaacttgtatggtgaggtgccggcctcacttgcaaagctagaaagcttgacgcaactagtgctttcttataatcacctttctgggtccattcctatatttcgtcaacatgttgatattgctaccaatggaaatcccgatcttacaaatggtacaagaaattatgacaacgcccctacaagtggtaagagaaggacacacaatacagtcatcatcgtcgttgccattactggtgctcttgttggattgtgcttgcttgctgctattgttacaatttcatattctaagagaatttatcgtgttgaagatgaaggaccatcaactgaggatgttgctcgaatcatcaatggtcacctcataactatgaatagtatccatacctctgcaattgatttcgtgaaagcaatggaagcagtctccaatcacagcaacatttttctgaaaacaaggttctgcacttactataaggctgtgatgcctaatggctcaacctattctttaaaacagattaattgcagtgacaagatattccaaattgggagccaagggaaggttgctcatgaacttgaggtacttgggaagttgagcaattccaaTgtaatggtgccattggcttATgtgttgacagaagacaatgcatacatcatctatgagcatgtgcacaagggcacggtgttcgatttccttcatgctggaagatcagatgttctggactggccttcacggtatagcatagcttttgggctagcccaagggctgacatttcttcatgggtgcactcagccagttctgcttcttgatctgtcaacaaggactgtccacttgaagtcaatgaatgagcctcagattggagatgttgaactttacaaaattgttgatactttgaagagcagtgggagcctttcgaccattgctggtacagttggttatattccaccagagtatgcatacacgatgaggttgacgatggctggcaacgtttacagctttggagtaatcttactggagcttttgactgggaaaccatcggtcagtgatggcatcgagttagccaagtgggctctgagtctttcaggcagccctgatcagagggagcagatccttgacaccagggtctcaagaacttcagctgctgttcacagccagatgttgtcggtcctgaacatcgccctcgcttgtgttgcgctctctccagatgctcgaccaaagatgcgcaccgtcttgaggatgctattcaacgcaaagtga
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| Protein seq | MGGQEQVAMAERRPCYCRNNGFLLLLVQVLLFLFLFLDSSMVATAASAPAPLNTTQVSIMKELSGLVTASAKWNTSDSNPCRWDGVSCSSSSNSISVVTNLTLSGYGLSNSTIFATICSLDTLQILDLSKNSFTNSIEQFFTSSCSMKAGLRSLNLSSSQLSMPLSNFSGFPLLEVLDLSFNSFSGDVRTQLSSLLKLRSLNLSSNNLAGDVPTSMTPSLEELVLSINNFSGSIPIALFNYQNLTMLDLSQNNLNGDVPDEFLKLPKLKTLLLSGNQLSGNIPVSVSNVASLARFAANQNNFTGFIPSGITKNVKMLDLSYNELSGVIPSDILSPVGLWTVDLTHNKLEGPIPSSLSPTLYRLRLGGGNSLNGTIPATIGDASTLAYLELDSNQLTGSIPLELGRCKSLSLLNLASNKFQGPVPDAISSLDKLVVLKLQMNNLDGPIPSVFSNLTSLITLNLSGNSFTGGIPREIGKLPKLSILNLQRNKISGTIPDSLHLLTSLIELNLGNNILTGTIPTMPTKLSTVLNLSHNNLSGSIPSNIDLLSDLEILDLSYNNLYGEVPASLAKLESLTQLVLSYNHLSGSIPIFRQHVDIATNGNPDLTNGTRNYDNAPTSGKRRTHNTVIIVVAITGALVGLCLLAAIVTISYSKRIYRVEDEGPSTEDVARIINGHLITMNSIHTSAIDFVKAMEAVSNHSNIFLKTRFCTYYKAVMPNGSTYSLKQINCSDKIFQIGSQGKVAHELEVLGKLSNSNVMVPLAYVLTEDNAYIIYEHVHKGTVFDFLHAGRSDVLDWPSRYSIAFGLAQGLTFLHGCTQPVLLLDLSTRTVHLKSMNEPQIGDVELYKIVDTLKSSGSLSTIAGTVGYIPPEYAYTMRLTMAGNVYSFGVILLELLTGKPSVSDGIELAKWALSLSGSPDQREQILDTRVSRTSAAVHSQMLSVLNIALACVALSPDARPKMRTVLRMLFNAK |
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| Function | Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 [UniProtKB/Swiss-Prot:O22938] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0005470 | OsLima_12g0005470.01 | Chr12 | 4272153 | 4276224 | - | NAM | ||
| CDS seq | atggGaggccaagaacaggtggccatggcggagaggaggccttgttactgtcgcaacaatggcttcttgctgctgctggtacaagttctcctcttcttgttcttgtttcttgattcgtccatggtcgccactgccgcgtcggcgccggcaccgctaaatacgactcaggtatcgatcatgaaggagctttctggcttggttactgccagtgccaagtggaacacgagcgattcgaatccatgccgatgggatggagtgagttgctcttctagctccaattccatatcagttgtgaccaaccttactttgtctgggtatggtttgtccaactccaccatatttgcaaccatatgctctcttgacaccttgcaaatccttgatctctctaagaattccttcaccaattcgatagagcaattcttcacctcttcttgctccatgaaggctggattgcggtcacttaatctcagcagcagccagctatccatgcctcttagtaatttctctggttttccccttcttgaggttcttgacttgtccttcaattctttcagtggtgatgtcagaacccagttgagttctttgctcaagctgagaagcttgaatcttagtagcaataacttggctggtgatgttcctacaagcatgaccccgtctttggaggaattggtgttgtccatcaacaatttcagtggtagcattccaatagctttgttcaattaccaaaatcttactatgctggatcttagtcagaacaatctaaatggtgatgtaccggatgagttcttaaagttacccaagctcaagactttgctcttatcaggtaatcaactgagtggcaatatacctgtgagtgtgtcaaatgttgcaagccttgctcggtttgcagctaatcagaacaattttaccggtttcatccctagtggtatcaccaagaatgtgaagatgctggatctgagttacaacgaacttagtggagtgattccctctgatattcttagtcctgtgggactgtggactgttgatctcactcacaataagctcgaagggcccatccctagcagcttgtctccgaccctctatcggttgaggcttggtggaggcaactctctcaatggaaccatcccggccaccattggtgatgcatcgaccttggcttatcttgagctggatagcaatcagttgacgggaagcataccattggaacttggcagatgcaagagtttgtctttgctgaatctggcatcaaataagtttcagggtccagtgcctgatgcaatcagcagccttgacaaactggtagttcttaaactccaaatgaacaatctggatggacctatcccaagtgtattttctaatttgacaagcctgatcacattgaatcttagtggtaattcattcactggagggataccaagagaaatcggcaagctgccaaagctttccattttgaatttgcaacgcaacaagatcagcggcaccattccagattcactccatttattaacttctctaattgagctcaatctggggaataatatcttgactggtaccatcccaacaatgccgaccaaattgagtactgttcttaatctaagccacaacaatctcagcggatctattccttcaaatattgacttattgagtgatctagagattcttgatctttcatacaacaacttgtatggtgaggtgccggcctcacttgcaaagctagaaagcttgacgcaactagtgctttcttataatcacctttctgggtccattcctatatttcgtcaacatgttgatattgctaccaatggaaatcccgatcttacaaatggtacaagaaattatgacaacgcccctacaagtggtaagagaaggacacacaatacagtcatcatcgtcgttgccattactggtgctcttgttggattgtgcttgcttgctgctattgttacaatttcatattctaagagaatttatcgtgttgaagatgaaggaccatcaactgaggatgttgctcgaatcatcaatggtcacctcataactatgaatagtatccatacctctgcaattgatttcgtgaaagcaatggaagcagtctccaatcacagcaacatttttctgaaaacaaggttctgcacttactataaggctgtgatgcctaatggctcaacctattctttaaaacagattaattgcagtgacaagatattccaaattgggagccaagggaaggttgctcatgaacttgaggtacttgggaagttgagcaattccaaTgtaatggtgccattggcttATgtgttgacagaagacaatgcatacatcatctatgagcatgtgcacaagggcacggtgttcgatttccttcatgctggaagatcagatgttctggactggccttcacggtatagcatagcttttgggctagcccaagggctgacatttcttcatgggtgcactcagccagttctgcttcttgatctgtcaacaaggactgtccacttgaagtcaatgaatgagcctcagattggagatgttgaactttacaaaattgttgatactttgaagagcagtgggagcctttcgaccattgctggtacagttggttatattccaccagagtatgcatacacgatgaggttgacgatggctggcaacgtttacagctttggagtaatcttactggagcttttgactgggaaaccatcggtcagtgatggcatcgagttagccaagtgggctctgagtctttcaggcagccctgatcagagggagcagatccttgacaccagggtctcaagaacttcagctgctgttcacagccagatgttgtcggtcctgaacatcgccctcgcttgtgttgcgctctctccagatgctcgaccaaagatgcgcaccgtcttgaggatgctattcaacgcaaagtga
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| Protein seq | MGGQEQVAMAERRPCYCRNNGFLLLLVQVLLFLFLFLDSSMVATAASAPAPLNTTQVSIMKELSGLVTASAKWNTSDSNPCRWDGVSCSSSSNSISVVTNLTLSGYGLSNSTIFATICSLDTLQILDLSKNSFTNSIEQFFTSSCSMKAGLRSLNLSSSQLSMPLSNFSGFPLLEVLDLSFNSFSGDVRTQLSSLLKLRSLNLSSNNLAGDVPTSMTPSLEELVLSINNFSGSIPIALFNYQNLTMLDLSQNNLNGDVPDEFLKLPKLKTLLLSGNQLSGNIPVSVSNVASLARFAANQNNFTGFIPSGITKNVKMLDLSYNELSGVIPSDILSPVGLWTVDLTHNKLEGPIPSSLSPTLYRLRLGGGNSLNGTIPATIGDASTLAYLELDSNQLTGSIPLELGRCKSLSLLNLASNKFQGPVPDAISSLDKLVVLKLQMNNLDGPIPSVFSNLTSLITLNLSGNSFTGGIPREIGKLPKLSILNLQRNKISGTIPDSLHLLTSLIELNLGNNILTGTIPTMPTKLSTVLNLSHNNLSGSIPSNIDLLSDLEILDLSYNNLYGEVPASLAKLESLTQLVLSYNHLSGSIPIFRQHVDIATNGNPDLTNGTRNYDNAPTSGKRRTHNTVIIVVAITGALVGLCLLAAIVTISYSKRIYRVEDEGPSTEDVARIINGHLITMNSIHTSAIDFVKAMEAVSNHSNIFLKTRFCTYYKAVMPNGSTYSLKQINCSDKIFQIGSQGKVAHELEVLGKLSNSNVMVPLAYVLTEDNAYIIYEHVHKGTVFDFLHAGRSDVLDWPSRYSIAFGLAQGLTFLHGCTQPVLLLDLSTRTVHLKSMNEPQIGDVELYKIVDTLKSSGSLSTIAGTVGYIPPEYAYTMRLTMAGNVYSFGVILLELLTGKPSVSDGIELAKWALSLSGSPDQREQILDTRVSRTSAAVHSQMLSVLNIALACVALSPDARPKMRTVLRMLFNAK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.234897 | 0.454924 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0182300 | RBH | 3.261035 | 3.371855 | 2.974507 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g08180 | RBH | 2.205282 | 2.267853 | 0.765696 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0182300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0005420 | RBH | 1.423705 | 15.887862 | 3.434433 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0005580 | RBH | 0.423766 | 5.709167 | 2.057416 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0005610 | RBH | 1.683074 | 7.636424 | 3.535437 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0005510 | RBH | 0.211756 | 0.271106 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0005580 | RBH | 6.791389 | 11.840678 | 9.795180 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0068400 | RBH | 6.5464835 | 15.111139 | 5.1680105 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0005550 | RBH | 0.438940 | 0.737945 | 0.472395 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0072900 | RBH | 8.128122 | 13.017998 | 11.587125 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0005990 | SBH | 0.068893 | 0.268738 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0005690 | RBH | 0.965244 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0005570 | RBH | 3.402963 | 8.232670 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0005560 | RBH | 1.504786 | 0.0 | 1.304912 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0005570 | RBH | 0.374988 | 5.352011 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G005370 | RBH | 0.725423 | 1.231339 | 1.346519 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0005620 | RBH | 2.045676 | 15.977316 | 5.987459 |
