Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0004290 | OGI:12008680 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:3187792-3190261 | ||||||||
| Gene Symbol | PGL1, OsPGL1 | ||||||||||
| DNA seq | ataaaacaaacccagtttcaacaaagttggggccaactccaaccccaggccatgttcgtttgtgtctatattttcaagcaatgctgtggacctttggtacctacctacaggctcgcaacgaaagaagtcacttcagttctgcatctacacaaagaaattctgtcaaggctgtcttccttttatgtcaaaaagatcacaactaccaaccgatttagcctttgattgcatcaccagtagtcattgcaagaacatgacctggtttcttcctactactccatccgtcccaaaatagaagaacctagaatcgaatgagacattttttagtgcctcttaagattcattgtcctaggaaatgtcacatccgcggttttaggttcttatattttaggactgtgggagtaactgattctagcctttgattgaatcaccagtaatcattgcaagatgggagtaactgattctagcctttgattgaatcaccagtagtcattgcaagaacatgaccccatcctgaagtggtggaacctgttgagatccctgacaacgaactccctctccacaatggcactgatgaccttaaacgcttcatggcagtcacggcacatcctcaggttcttcatcaccctaatggccatccccttggggatcaccagcaatccaagccccaatgccagcaactcactgtgcactccaaccatcacacctctgccttcctgatgatgatgatttccatcctcttcttcatcagcatcaaggactctggcactgccaattctccccttgtaacccTtctccctcatcttgccctccaattcatctaacagcagcatcacctcaccggcccttgagccggcaggcgataccacgccagcgtagaacatgtaggagatgtcctttatctcgatccagctgcacccgggatccttccgaatgccgcgccgcctcatgttcgaccacaccgcagcagcgtcgtcggcttgaccggctgaagcgtatgcgttcgacatgaccaccagtgcgccggccacatcttgggtgaactctgataccttctgcccagccatggttgctaggtccaggcgcttgtggttccggcaagctgacagcaatgagctccacagcatgagggcgtcattgccattgacctgtgcttcgtcggccagctcgaatgcctcttcgagctgacctgcacgaccgagcatgtcgacagcacaagtgtagtggctggcacatggatcaatgccgtactcgcttcgcattgaacggaggagctggaggccggtgtcgaccagacctgagtggctgcaagcgtgcaggacgccgagcagtgtgacactgtttggctgcacgcctcggccaaccatgtcactgaacaaagcgagtgcgcacctgccgaggccgtacttcgccgtcgccacgatgatggaggtgtaggggatgaccgacggctggttgatcctgtcgaacaccttctttgagtactcgtagatgccacatttggagtacatgtcaaccagagccactgcaaccacgtcattgtcttcgtgcccatggtggaggaccatgccgtgaatgcacttgccgatgccaagccgcccgacgCccgcgcacgcgttcaccacgcttgacagcatgaagtggttgggcgccatgtcttcgccattggttctgagctcggcgaagagctggatagcgtcatgcccgagcgcgttctgcgcatacaccgacagcatcgaggcccaggaaaccgcgtttctcgccgtcacgggcattgcgtcgaacacggcgcgggcgtccccgaccctgccggccttgccgtacatgtcgacgagcgcagtggaaacgacgctgtcgcacgcgtaCcccgcgacctcagcgcgggcatgcacctgccgcccaaggccggcgtcagccaggcgagcgcacgagctggcagctgtagagaaggtgaaggcgttgggtggcacgccgctgcgtgccatggcgcggaggagggcgacggccgcccggggccggccggcgctggcgtacccggacatgagggccgtccaggagacgacgttccggtcgcgcattccgtcgaacaggtggcgcgcgagggcggtgcagccgcagcggccgtacgccgcgaggaggtggttggaggaggcgaccgaggaggccgccccgagcttgaggagcttggcgtgggtggcggacacggaggcgaggtcggaggcgccgcgaaggaggtggatcagcagcggcatgagcgtggccgcgccggcggcggcgttggatgtcgccgtcatggagaccggttggtgccagtgtcatgtcgaggatcggaagcgcttgggaggtaccacgccggaggagccgctgccggggacggggcgcgccggggaaaagcagcgccgccgccgccgccgccgcggcgcaggccctagtccgtgtttgcttggggagaaccggagaaggcaaccagatc
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| CDS seq | atgacggcgacatccaacgccgccgccggcgcggccacgctcatgccgctgctgatccacctccttcgcggcgcctccgacctcgcctccgtgtccgccacccacgccaagctcctcaagctcggggcggcctcctcggtcgcctcctccaaccacctcctcgcggcgtacggccgctgcggctgcaccgccctcgcgcgccacctgttcgacggaatgcgcgaccggaacgtcgtctcctggacggccctcatgtccgggtacgccagcgccggccggccccgggcggccgtcgccctcctccgcgccatggcacgcagcggcgtgccacccaacgccttcaccttctctacagctgccagctcgtgcgctcgcctggctgacgccggccttgggcggcaggtgcatgcccgcgctgaggtcgcgggGtacgcgtgcgacagcgtcgtttccactgcgctcgtcgacatgtacggcaaggccggcagggtcggggacgcccgcgccgtgttcgacgcaatgcccgtgacggcgagaaacgcggtttcctgggcctcgatgctgtcggtgtatgcgcagaacgcgctcgggcatgacgctatccagctcttcgccgagctcagaaccaatggcgaagacatggcgcccaaccacttcatgctgtcaagcgtggtgaacgcgtgcgcggGcgtcgggcggcttggcatcggcaagtgcattcacggcatggtcctccaccatgggcacgaagacaatgacgtggttgcagtggctctggttgacatgtactccaaatgtggcatctacgagtactcaaagaaggtgttcgacaggatcaaccagccgtcggtcatcccctacacctccatcatcgtggcgacggcgaagtacggcctcggcaggtgcgcactcgctttgttcagtgacatggttggccgaggcgtgcagccaaacagtgtcacactgctcggcgtcctgcacgcttgcagccactcaggtctggtcgacaccggcctccagctcctccgttcaatgcgaagcgagtacggcattgatccatgtgccagccactacacttgtgctgtcgacatgctcggtcgtgcaggtcagctcgaagaggcattcgagctggccgacgaagcacaggtcaatggcaatgacgccctcatgctgtggagctcattgctgtcagcttgccggaaccacaagcgcctggacctagcaaccatggctgggcagaaggtatcagagttcacccaagatgtggccggcgcactggtggtcatgtcgaacgcatacgcttcagccggtcaagccgacgacgctgctgcggtgtggtcgaacatgaggcggcgcggcattcggaaggatcccgggtgcagctggatcgagataaaggacatctcctacatgttctacgctggcgtggtatcgcctgccggctcaagggccggtgaggtgatgctgctgttagatgaattggagggcaagatgagggagaAgggttacaaggggagaattggcagtgccagagtccttgatgctgatgaagaagaggatggaaatcatcatcatcaggaaggcagaggtgtgatggttggagtgcacagtgagttgctggcattggggcttggattgctggtgatccccaaggggatggccattagggtgatgaagaacctgaggatgtgccgtgactgccatgaagcgtttaaggtcatcagtgccattgtggagagggagttcgttgtcagggatctcaacaggttccaccacttcaggatggggtcatgttcttgcaatgactactggtga
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| Protein seq | MTATSNAAAGAATLMPLLIHLLRGASDLASVSATHAKLLKLGAASSVASSNHLLAAYGRCGCTALARHLFDGMRDRNVVSWTALMSGYASAGRPRAAVALLRAMARSGVPPNAFTFSTAASSCARLADAGLGRQVHARAEVAGYACDSVVSTALVDMYGKAGRVGDARAVFDAMPVTARNAVSWASMLSVYAQNALGHDAIQLFAELRTNGEDMAPNHFMLSSVVNACAGVGRLGIGKCIHGMVLHHGHEDNDVVAVALVDMYSKCGIYEYSKKVFDRINQPSVIPYTSIIVATAKYGLGRCALALFSDMVGRGVQPNSVTLLGVLHACSHSGLVDTGLQLLRSMRSEYGIDPCASHYTCAVDMLGRAGQLEEAFELADEAQVNGNDALMLWSSLLSACRNHKRLDLATMAGQKVSEFTQDVAGALVVMSNAYASAGQADDAAAVWSNMRRRGIRKDPGCSWIEIKDISYMFYAGVVSPAGSRAGEVMLLLDELEGKMREKGYKGRIGSARVLDADEEEDGNHHHQEGRGVMVGVHSELLALGLGLLVIPKGMAIRVMKNLRMCRDCHEAFKVISAIVEREFVVRDLNRFHHFRMGSCSCNDYW |
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| Function | Pentatricopeptide repeat-containing protein At4g15720 [UniProtKB/Swiss-Prot:Q8VYH0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0004290 | OsLima_12g0004290.01 | Chr12 | 3187792 | 3190261 | - | NAM | ||
| CDS seq | atgacggcgacatccaacgccgccgccggcgcggccacgctcatgccgctgctgatccacctccttcgcggcgcctccgacctcgcctccgtgtccgccacccacgccaagctcctcaagctcggggcggcctcctcggtcgcctcctccaaccacctcctcgcggcgtacggccgctgcggctgcaccgccctcgcgcgccacctgttcgacggaatgcgcgaccggaacgtcgtctcctggacggccctcatgtccgggtacgccagcgccggccggccccgggcggccgtcgccctcctccgcgccatggcacgcagcggcgtgccacccaacgccttcaccttctctacagctgccagctcgtgcgctcgcctggctgacgccggccttgggcggcaggtgcatgcccgcgctgaggtcgcgggGtacgcgtgcgacagcgtcgtttccactgcgctcgtcgacatgtacggcaaggccggcagggtcggggacgcccgcgccgtgttcgacgcaatgcccgtgacggcgagaaacgcggtttcctgggcctcgatgctgtcggtgtatgcgcagaacgcgctcgggcatgacgctatccagctcttcgccgagctcagaaccaatggcgaagacatggcgcccaaccacttcatgctgtcaagcgtggtgaacgcgtgcgcggGcgtcgggcggcttggcatcggcaagtgcattcacggcatggtcctccaccatgggcacgaagacaatgacgtggttgcagtggctctggttgacatgtactccaaatgtggcatctacgagtactcaaagaaggtgttcgacaggatcaaccagccgtcggtcatcccctacacctccatcatcgtggcgacggcgaagtacggcctcggcaggtgcgcactcgctttgttcagtgacatggttggccgaggcgtgcagccaaacagtgtcacactgctcggcgtcctgcacgcttgcagccactcaggtctggtcgacaccggcctccagctcctccgttcaatgcgaagcgagtacggcattgatccatgtgccagccactacacttgtgctgtcgacatgctcggtcgtgcaggtcagctcgaagaggcattcgagctggccgacgaagcacaggtcaatggcaatgacgccctcatgctgtggagctcattgctgtcagcttgccggaaccacaagcgcctggacctagcaaccatggctgggcagaaggtatcagagttcacccaagatgtggccggcgcactggtggtcatgtcgaacgcatacgcttcagccggtcaagccgacgacgctgctgcggtgtggtcgaacatgaggcggcgcggcattcggaaggatcccgggtgcagctggatcgagataaaggacatctcctacatgttctacgctggcgtggtatcgcctgccggctcaagggccggtgaggtgatgctgctgttagatgaattggagggcaagatgagggagaAgggttacaaggggagaattggcagtgccagagtccttgatgctgatgaagaagaggatggaaatcatcatcatcaggaaggcagaggtgtgatggttggagtgcacagtgagttgctggcattggggcttggattgctggtgatccccaaggggatggccattagggtgatgaagaacctgaggatgtgccgtgactgccatgaagcgtttaaggtcatcagtgccattgtggagagggagttcgttgtcagggatctcaacaggttccaccacttcaggatggggtcatgttcttgcaatgactactggtga
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| Protein seq | MTATSNAAAGAATLMPLLIHLLRGASDLASVSATHAKLLKLGAASSVASSNHLLAAYGRCGCTALARHLFDGMRDRNVVSWTALMSGYASAGRPRAAVALLRAMARSGVPPNAFTFSTAASSCARLADAGLGRQVHARAEVAGYACDSVVSTALVDMYGKAGRVGDARAVFDAMPVTARNAVSWASMLSVYAQNALGHDAIQLFAELRTNGEDMAPNHFMLSSVVNACAGVGRLGIGKCIHGMVLHHGHEDNDVVAVALVDMYSKCGIYEYSKKVFDRINQPSVIPYTSIIVATAKYGLGRCALALFSDMVGRGVQPNSVTLLGVLHACSHSGLVDTGLQLLRSMRSEYGIDPCASHYTCAVDMLGRAGQLEEAFELADEAQVNGNDALMLWSSLLSACRNHKRLDLATMAGQKVSEFTQDVAGALVVMSNAYASAGQADDAAAVWSNMRRRGIRKDPGCSWIEIKDISYMFYAGVVSPAGSRAGEVMLLLDELEGKMREKGYKGRIGSARVLDADEEEDGNHHHQEGRGVMVGVHSELLALGLGLLVIPKGMAIRVMKNLRMCRDCHEAFKVISAIVEREFVVRDLNRFHHFRMGSCSCNDYW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.049194 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0163600 | RBH | 0.185636 | 0.190374 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g06650 | RBH | 0.125537 | 0.128042 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0163600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0004250 | RBH | 0.153951 | 1.063261 | 0.256121 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0004510 | RBH | 0.0 | 0.0 | 0.138053 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0004480 | RBH | 0.0 | 0.592262 | 1.580324 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0004320 | RBH | 0.0 | 0.023900 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0004530 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0055600 | RBH | 0.861402 | 2.0910935 | 0.601226 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0004520 | RBH | 0.0 | 0.173975 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0059900 | RBH | 0.768089 | 1.8571895 | 3.9203085 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0000930 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0004520 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0004520 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0004480 | RBH | 0.074626 | 0.0 | 0.139803 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0004410 | RBH | 0.035525 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G004330 | RBH | 0.063475 | 0.718993 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0004540 | RBH | 0.0 | 0.0 | 0.953339 |
