Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0000930 | OGI:11002560 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:656449-657920 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gggctttttcttagcccactaaccaaaccacggcccactaggcgagcccaccaatgcgttccacatccacgaccacgactgcctcctaccaccgcctcctgcgccgcttccctcgccggagcgccgccggcggtcaccagctccacgcgctgctcgccaagctcggcctgctccaccaccctgaattcctctccgctctcctctctcgcatcccgccttcgccgtcggcgctctcccttctgctcgaggcctccccggccgtcctctcgccgtcgctcgtctgcccggtcatcgtcgccttctcctcctctccggccccgtcgtccgcgctcatcctcttcaaccatgcctcctcgtgctccctccccaccccgctacccaccttccctgcgttactcaaatcctgcgctcgcgcattcaaccgcagctctcgcgccggtgtcgcgtcggtcttcgtctccaaggggatggagctgcattgccgtgtcttgaagcttggctgcgggaaggatcgatacgtgcggaatgcgctcgtctccatgtatggcaagttcggtcgcctcggggatgcacggaaggcgttcgatgaaatgcctgacaagaacgccgtctcgtggaatgcgttggtcggggctcatcgtgccgctgcagactggatgggtgcagagcgcgtctctcaagccatgccagagaggaacttgtcatggtggaatgctgagatcgcacgaaatgttagtatcgggtatatggatgaggcatcaaggcttttcagggaaatgccacagagggatgttgtttcatggaactctttgataagtggctacacaaagctcggcaaatataccaaagcattggagatatttcaagaaatgaaggagaatgccattgaacctacggagcttacacttgtattaatccttggggcttgtgcaaaggatggcaagctggagctggggacagacatccacataaaccttcagagcaagggcattgtatctgatggcttggttggcaatgcactcattgatatgtatgcaaaatgtgggaggttggatctcgccaagaaggtctttgacagaatgtctatgagggatattacatgctggaatgcgatgatcattggtttctcagtacatggctgctcatatgaggctctagagctctttgattcgatgaaaattgagccaaatcctgtcacatttttgggtgtcttgactgcctgcagccatggtggcctagtgaatgaggggaggaaatattttaatagcatgattgaggactacagaattgttcctgatgttaagcattatggctgcatgattgatatgctttgccgctatggaagaattgaagaagcttatctgatgattaaagaaaacccttcaacagcaaactctgttctgtggaagatgttgttggcagcttgccgattgcatgggcacatcgatcttgcttacaagttttttcattaa
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| CDS seq | atgcgttccacatccacgaccacgactgcctcctaccaccgcctcctgcgccgcttccctcgccggagcgccgccggcggtcaccagctccacgcgctgctcgccaagctcggcctgctccaccaccctgaattcctctccgctctcctctctcgcatcccgccttcgccgtcggcgctctcccttctgctcgaggcctccccggccgtcctctcgccgtcgctcgtctgcccggtcatcgtcgccttctcctcctctccggccccgtcgtccgcgctcatcctcttcaaccatgcctcctcgtgctccctccccaccccgctacccaccttccctgcgttactcaaatcctgcgctcgcgcattcaaccgcagctctcgcgccggtgtcgcgtcggtcttcgtctccaaggggatggagctgcattgccgtgtcttgaagcttggctgcgggaaggatcgatacgtgcggaatgcgctcgtctccatgtatggcaagttcggtcgcctcggggatgcacggaaggcgttcgatgaaatgcctgacaagaacgccgtctcgtggaatgcgttggtcggggctcatcgtgccgctgcagactggatgggtgcagagcgcgtctctcaagccatgccagagaggaacttgtcatggtggaatgctgagatcgcacgaaatgttagtatcgggtatatggatgaggcatcaaggcttttcagggaaatgccacagagggatgttgtttcatggaactctttgataagtggctacacaaagctcggcaaatataccaaagcattggagatatttcaagaaatgaaggagaatgccattgaacctacggagcttacacttgtattaatccttggggcttgtgcaaaggatggcaagctggagctggggacagacatccacataaaccttcagagcaagggcattgtatctgatggcttggttggcaatgcactcattgatatgtatgcaaaatgtgggaggttggatctcgccaagaaggtctttgacagaatgtctatgagggatattacatgctggaatgcgatgatcattggtttctcagtacatggctgctcatatgaggctctagagctctttgattcgatgaaaattgagccaaatcctgtcacatttttgggtgtcttgactgcctgcagccatggtggcctagtgaatgaggggaggaaatattttaatagcatgattgaggactacagaattgttcctgatgttaagcattatggctgcatgattgatatgctttgccgctatggaagaattgaagaagcttatctgatgattaaagaaaacccttcaacagcaaactctgttctgtggaagatgttgttggcagcttgccgattgcatgggcacatcgatcttgcttacaagttttttcattaa
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| Protein seq | MRSTSTTTTASYHRLLRRFPRRSAAGGHQLHALLAKLGLLHHPEFLSALLSRIPPSPSALSLLLEASPAVLSPSLVCPVIVAFSSSPAPSSALILFNHASSCSLPTPLPTFPALLKSCARAFNRSSRAGVASVFVSKGMELHCRVLKLGCGKDRYVRNALVSMYGKFGRLGDARKAFDEMPDKNAVSWNALVGAHRAAADWMGAERVSQAMPERNLSWWNAEIARNVSIGYMDEASRLFREMPQRDVVSWNSLISGYTKLGKYTKALEIFQEMKENAIEPTELTLVLILGACAKDGKLELGTDIHINLQSKGIVSDGLVGNALIDMYAKCGRLDLAKKVFDRMSMRDITCWNAMIIGFSVHGCSYEALELFDSMKIEPNPVTFLGVLTACSHGGLVNEGRKYFNSMIEDYRIVPDVKHYGCMIDMLCRYGRIEEAYLMIKENPSTANSVLWKMLLAACRLHGHIDLAYKFFH |
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| Function | Pentatricopeptide repeat-containing protein At4g18840 [UniProtKB/Swiss-Prot:O49399] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0000930 | OsLima_11g0000930.01 | Chr11 | 656449 | 657920 | + | NAM | ||
| CDS seq | atgcgttccacatccacgaccacgactgcctcctaccaccgcctcctgcgccgcttccctcgccggagcgccgccggcggtcaccagctccacgcgctgctcgccaagctcggcctgctccaccaccctgaattcctctccgctctcctctctcgcatcccgccttcgccgtcggcgctctcccttctgctcgaggcctccccggccgtcctctcgccgtcgctcgtctgcccggtcatcgtcgccttctcctcctctccggccccgtcgtccgcgctcatcctcttcaaccatgcctcctcgtgctccctccccaccccgctacccaccttccctgcgttactcaaatcctgcgctcgcgcattcaaccgcagctctcgcgccggtgtcgcgtcggtcttcgtctccaaggggatggagctgcattgccgtgtcttgaagcttggctgcgggaaggatcgatacgtgcggaatgcgctcgtctccatgtatggcaagttcggtcgcctcggggatgcacggaaggcgttcgatgaaatgcctgacaagaacgccgtctcgtggaatgcgttggtcggggctcatcgtgccgctgcagactggatgggtgcagagcgcgtctctcaagccatgccagagaggaacttgtcatggtggaatgctgagatcgcacgaaatgttagtatcgggtatatggatgaggcatcaaggcttttcagggaaatgccacagagggatgttgtttcatggaactctttgataagtggctacacaaagctcggcaaatataccaaagcattggagatatttcaagaaatgaaggagaatgccattgaacctacggagcttacacttgtattaatccttggggcttgtgcaaaggatggcaagctggagctggggacagacatccacataaaccttcagagcaagggcattgtatctgatggcttggttggcaatgcactcattgatatgtatgcaaaatgtgggaggttggatctcgccaagaaggtctttgacagaatgtctatgagggatattacatgctggaatgcgatgatcattggtttctcagtacatggctgctcatatgaggctctagagctctttgattcgatgaaaattgagccaaatcctgtcacatttttgggtgtcttgactgcctgcagccatggtggcctagtgaatgaggggaggaaatattttaatagcatgattgaggactacagaattgttcctgatgttaagcattatggctgcatgattgatatgctttgccgctatggaagaattgaagaagcttatctgatgattaaagaaaacccttcaacagcaaactctgttctgtggaagatgttgttggcagcttgccgattgcatgggcacatcgatcttgcttacaagttttttcattaa
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| Protein seq | MRSTSTTTTASYHRLLRRFPRRSAAGGHQLHALLAKLGLLHHPEFLSALLSRIPPSPSALSLLLEASPAVLSPSLVCPVIVAFSSSPAPSSALILFNHASSCSLPTPLPTFPALLKSCARAFNRSSRAGVASVFVSKGMELHCRVLKLGCGKDRYVRNALVSMYGKFGRLGDARKAFDEMPDKNAVSWNALVGAHRAAADWMGAERVSQAMPERNLSWWNAEIARNVSIGYMDEASRLFREMPQRDVVSWNSLISGYTKLGKYTKALEIFQEMKENAIEPTELTLVLILGACAKDGKLELGTDIHINLQSKGIVSDGLVGNALIDMYAKCGRLDLAKKVFDRMSMRDITCWNAMIIGFSVHGCSYEALELFDSMKIEPNPVTFLGVLTACSHGGLVNEGRKYFNSMIEDYRIVPDVKHYGCMIDMLCRYGRIEEAYLMIKENPSTANSVLWKMLLAACRLHGHIDLAYKFFH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0114800 | RBH | 0.151266 | 0.000000 | 0.244844 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g02310 | RBH | 0.000000 | 0.000000 | 0.087004 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0114800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0001050 | RBH | 0.000000 | 0.000000 | 0.097584 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0001100 | RBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0001050 | RBH | 0.000000 | 0.873624 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0001060 | RBH | 0.062765 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0001050 | RBH | 0.000000 | 0.000000 | 0.700594 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0013300 | RBH | 0.531054 | 0.6060085 | 0.58788 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0001050 | RBH | 0.000000 | 0.000000 | 0.075854 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0014800 | RBH | 0.2675285 | 0.467316 | 2.1523225 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0000930 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0001050 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0001050 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0001050 | RBH | 0.000000 | 0.0 | 0.141689 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0001080 | RBH | 0.031247 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G001060 | RBH | 0.048570 | 0.551071 | 0.109926 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0001040 | RBH | 0.968575 | 0.0 | 0.0 |
