Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0003000 | OGI:12005900 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:2057090-2061314 | ||||||||
| Gene Symbol | DMC1A, OsDMC1A, OsDmc1A, Dmc1A, DMC1, OsDMC1, RiLIM15A, OsRad51 | ||||||||||
| DNA seq | taaacctcttatatatttttcacttaagacaatactgtatttgTttcagtacaactgttgatctcataagcatagaaaaatacccattttaaggtataatcgtctggataaatgaggttgcatatttcctcgacagtggcaaagtagcagtagtagtttagtcaatgtaccaaacccatatggcctatgcaggaatttactaggagaaacctgaacaatttgaagacaggaagcaccctcaatgaacattcagtctttcgcatccattattccacctgatgttacctggaaaacgtgttattggtcaagggaagcaactattttacaccacaccattaataatctgttatgcaaagcttttggacttccagtcaccgaaaACagcatctgcaattaactaaatcacaagagtttgaggagcaagtctgaacaaagaaagaaaaaccaatcaatattttagcaacctactgaaccgaagttaccaattgcacaagaagttttggtaaacatgtatatgtataatacaaaaggatatagcttctccctcaggcaggttaggggcatcaaagatcttgcagacacgctgctctccttttcctttcctcagcatcaaccggatggtagctgcatgcgccagcacgtggcctcccgctggttttttcaggtcagttatgaacattccaccacctgggtcggcaatcactgaaacaaggaggacacttgtaatttgaaatcccttatggtgttactctttcttgggatatacaggatagtcctgaaagctcaccttggttggtgatgtacactgcaacattgaactcctcagctattttagtaaggcgggagagcatctgtgccaatttttgctgcaagttcagagtaattagtacataactttaggccttcaactactttatgattttttttttgtttctaccaacacaaatattgacaatacctggcgctctgcaagttcacccctgccactgaaatcgacacggaatagtgcgatcacagaatccacaatctactcaggtaaaacaaccacataagtaactgagatacacaaatttatcaatgttcttttatgttatggagccatgcctaccagaagcctgaaaggctcttcagccatcttagcggcaaggccaaggagaaggttgtactggtgctcataggtgtatgcacgagcatatatgatctaaacaagaaataaatggaaatataacatacagcttcatctgttaggcctgaaatggtaaagacaaattaagagccatacattatcaagaacagcattggcatccatcccaaatctctcagcaatcggcacaattcgttcaggccggctgaaaattccattaaggAaacaagttggggcgatatggaaatgcaaataaatccattgagtgaatcagctgagttattactcagtaaattcaaaagatacaatgttccctcagtatcaatgtaagcaaccttcccgttccccccatgcatgtggattggaagctgcagttcacaaacaaaaaataaataaaattattcattggatctatggtagtaaggtgttgatgacaaaaatgtgtcggaaatgaacctgagtggagacgcatagagtgtgagccaactgggtcttccctgatctgaggaccaaaaataaagatgacagattacaaattacaaagctaagaagctggaaccaaattgacgaatgatgaacgttaaatcaaagtacatcaagggtcaaagtttggctggttcacattaaatagtaagatgttttatttatgtgctacacaaagccaaattgttccaagctgcaattcaaggaatcattctataatacatcaactttgtcgcaaaacaagattatctcagctaaatttaatgtttagtagaaccaatttagtattaacatcaaagaaaacagtttcagacaatattgatgtgtatatgcctgaagtttacacatgaggagtattaagttctcagtgttagcagaatacaaacatatttaggaatttactgtatatactggcatgaataaatgatAaaaatgggagcacaacagccttagcaaattaacttcaaccagaatactaaccatattgctaagctagattttcaccatatctattagacagatatggccacattccattggtacaaccaatctgcagttgtaatccaggaaaaagaatcaaaaggaacaagaacgtctacgcaccgaaattctccaaatgcctctgtgatgcaaagtgtttcaatccctccttgaaaatttgaagaatgaaaatagattagaacaacataatgcaacaactgatcataacataatcagaggactatatatgctaccgccaagcagcttgtcaagcgcctggctcccagtggtgattcgaacaacagacttccgcttcaaaagaagaaaaagaataaaccaaacagcccagggaagtgcacagctggagtaactaaaagctctagagcatccatgaagcaaggaatagtttccacttagtttgctataacaccatatcctgtacactagtatgctgtatgcagattagctcctatttccttaccttaataaggagatcacttcctgttatgaagccctgactctgagAaaaacaaatatagcaatttcagaagaatgtatcacacagaattgacagtgaagctttcagactttaataatgaaaagagaaccacaccagaagtttttcggctgcttcgcagatcttgtctacctttgcttcagataatcccttgattcctgtcaggctctacaagatgaatccatatattgaaacaatatcagataagcatactgtaagaaagaaatagaacaaacgaaagaagatgggtgtcataaaccagaaatggaacaagcaggagatggcatgaaggtttgggatcccgagttcacaaccttctttgtatgcatcatgaggccattgcaagtgtagataccagcatcctgcagcttcttcacatctccagagtttatcccttgcgagattactgtagacaagtgcaccagagatgaacagtaatgcaggaactatgctcattagtttgaattcacggcaatgaataatttgcaggaagaaccaaatgaagcatgaaacacaggcaaatgtcaggatcacaccaaacaacttactaaaattgaactcgctagagttagggagccaccagaaaacgtaaagtgcaagaggaactcaagcttaatccctaaacctccaagtgcacccatacacaactggttcaactaaatgcactccaagtgcaccaaaacacacaactgattcaactaatatgcagaaaatgcaaatgtttaaactagccggtggagaattccgacgagttccagcgatcattttgacgggttaatgcaaaacgcgtgtaaatttgactaaaaatggggataaattctaatcgatcctctcatagcaagcgatgtggcgatccacacaccgatcagcaggaaatagcccaaaaacagagatcaattgtggagcggcgaaaattccagaacaaattcgtcacgagacgaggctaatttatgtccagaacgcacgaaattGgggggaaaactagaagcaacccaacacgcacatcacaaagcatccagacgctgctcgcaagcagaatcgaaaccaacaaaaaaaaagtggaaacgtactaatgctaaatctcgtttacttcaccgcgaatcaagcatcgaactacaagtcgaacagcgactaattgaaaggcgagGCagaacgagcactgccactcgcacgcgcgaacacacgcgaacacacacgaacgcacacgagcaggcgcgccaagcaatgcagtgcgggatacgagacaGggggaggaagggatggagatgaggcggagggcgtacgcttgtcgatggactcgaagcactcctcctcctcctcgatcctctcggcgtccatgagctggagctgcccgccttcgctgtactgcttggacggcgccatctgcccacctgcgtcgaaatgtgcgatcaggggagaacccaaccagaatcacccaaaaacccaagcgagaacggcgagcggaggcgtccgccgcggcggagAaaaacctcctcacctgtaggcggaggcggcgaggtcgtcggagcggagcgggggcttggaggagaaggaagcagcagaggaagacgacgaagtggttgtgttgcgccgttgcgtgt
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| CDS seq | atggcgccgtccaagcagtacagcgaaggcgggcagctccagctcatggacgccgagaggatcgaggaggaggaggagtgcttcgagtccatcgacaagctaatctcgcaagggataaactctggagatgtgaagaagctgcaggatgctggtatctacacttgcaatggcctcatgatgcatacaaagaagagcctgacaggaatcaagggattatctgaagcaaaggtagacaagatctgcgaagcagccgaaaaacttctgagtcagggcttcataacaggaagtgatctccttattaagcggaagtctgttgttcgaatcaccactgggagccaggcgcttgacaagctgcttggcggagggattgaaacactttgcatcacagaggcatttggagaatttcgatcagggaagacccagttggctcacactctatgcgtctccactcagcttccaatccacatgcatggggggaacgggaaggttgcttacattgatactgagggaacattccggcctgaacgaattgtgccgattgctgagagatttgggatggatgccaatgctgttcttgataatatcatatatgctcgtgcatacacctatgagcaccagtacaaccttctccttggccttgccgctaagatggctgaagagcctttcaggcttctgattgtggattctgtgatcgcactattccgtgtcgatttcagtggcaggggtgaacttgcagagcgccagcaaaaattggcacagatgctctcccgccttactaaaatagctgaggagttcaatgttgcagtgtacatcaccaaccaagtgattgccgacccaggtggtggaatgttcataactgacctgaaaaaaccagcgggaggccacgtgctggcgcatgcagctaccatccggttgatgctgaggaaaggaaaaggagagcagcgtgtctgcaagatctttgatgcccctaacctgcctgagggagaagctatatccttttgtattatacatatacatgtttaccaaaacttcttgtgcaattggtaa
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| Protein seq | MAPSKQYSEGGQLQLMDAERIEEEEECFESIDKLISQGINSGDVKKLQDAGIYTCNGLMMHTKKSLTGIKGLSEAKVDKICEAAEKLLSQGFITGSDLLIKRKSVVRITTGSQALDKLLGGGIETLCITEAFGEFRSGKTQLAHTLCVSTQLPIHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFSGRGELAERQQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDLKKPAGGHVLAHAATIRLMLRKGKGEQRVCKIFDAPNLPEGEAISFCIIHIHVYQNFLCNW |
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| Function | Meiotic recombination protein DMC1 homolog A [UniProtKB/Swiss-Prot:B8BM09] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0003000 | OsLima_12g0003000.01 | Chr12 | 2057568 | 2061314 | - | NAM | ||
| CDS seq | atggcgccgtccaagcagtacagcgaaggcgggcagctccagctcatggacgccgagaggatcgaggaggaggaggagtgcttcgagtccatcgacaagctaatctcgcaagggataaactctggagatgtgaagaagctgcaggatgctggtatctacacttgcaatggcctcatgatgcatacaaagaagagcctgacaggaatcaagggattatctgaagcaaaggtagacaagatctgcgaagcagccgaaaaacttctgagtcagggcttcataacaggaagtgatctccttattaagcggaagtctgttgttcgaatcaccactgggagccaggcgcttgacaagctgcttggcggagggattgaaacactttgcatcacagaggcatttggagaatttcgatcagggaagacccagttggctcacactctatgcgtctccactcagcttccaatccacatgcatggggggaacgggaaggttgcttacattgatactgagggaacattccggcctgaacgaattgtgccgattgctgagagatttgggatggatgccaatgctgttcttgataatatcatatatgctcgtgcatacacctatgagcaccagtacaaccttctccttggccttgccgctaagatggctgaagagcctttcaggcttctgattgtggattctgtgatcgcactattccgtgtcgatttcagtggcaggggtgaacttgcagagcgccagcaaaaattggcacagatgctctcccgccttactaaaatagctgaggagttcaatgttgcagtgtacatcaccaaccaagtgattgccgacccaggtggtggaatgttcataactgacctgaaaaaaccagcgggaggccacgtgctggcgcatgcagctaccatccggttgatgctgaggaaaggaaaaggagagcagcgtgtctgcaagatctttgatgcccctaacctgcctgagggagaagctatatccttttgtattatacatatacatgtttaccaaaacttcttgtgcaattggtaa
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| Protein seq | MAPSKQYSEGGQLQLMDAERIEEEEECFESIDKLISQGINSGDVKKLQDAGIYTCNGLMMHTKKSLTGIKGLSEAKVDKICEAAEKLLSQGFITGSDLLIKRKSVVRITTGSQALDKLLGGGIETLCITEAFGEFRSGKTQLAHTLCVSTQLPIHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFSGRGELAERQQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDLKKPAGGHVLAHAATIRLMLRKGKGEQRVCKIFDAPNLPEGEAISFCIIHIHVYQNFLCNW
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0003000 | OsLima_12g0003000.02 | Chr12 | 2057090 | 2061304 | - | NAM | ||
| CDS seq | atggcgccgtccaagcagtacagcgaaggcgggcagctccagctcatggacgccgagaggatcgaggaggaggaggagtgcttcgagtccatcgacaagctaatctcgcaagggataaactctggagatgtgaagaagctgcaggatgctggtatctacacttgcaatggcctcatgatgcatacaaagaagagcctgacaggaatcaagggattatctgaagcaaaggtagacaagatctgcgaagcagccgaaaaacttctgagtcagggcttcataacaggaagtgatctccttattaagcggaagtctgttgttcgaatcaccactgggagccaggcgcttgacaagctgcttggcggagggattgaaacactttgcatcacagaggcatttggagaatttcgatcagggaagacccagttggctcacactctatgcgtctccactcagcttccaatccacatgcatggggggaacgggaaggttgcttacattgatactgagggaacattccggcctgaacgaattgtgccgattgctgagagatttgggatggatgccaatgctgttcttgataatatcatatatgctcgtgcatacacctatgagcaccagtacaaccttctccttggccttgccgctaagatggctgaagagcctttcaggcttctgattgtggattctgtgatcgcactattccgtgtcgatttcagtggcaggggtgaacttgcagagcgccagcaaaaattggcacagatgctctcccgccttactaaaatagctgaggagttcaatgttgcagtgtacatcaccaaccaagtgattgccgacccaggtggtggaatgttcataactgacctgaaaaaaccagcgggaggccacgtgctggcgcatgcagctaccatccggttgatgctgaggaaaggaaaaggagagcagcgtgtctgcaagatctttgatgcccctaacctgcctgagggagaagctgttttccaggtaacatcaggtggaataatggatgcgaaagactga
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| Protein seq | MAPSKQYSEGGQLQLMDAERIEEEEECFESIDKLISQGINSGDVKKLQDAGIYTCNGLMMHTKKSLTGIKGLSEAKVDKICEAAEKLLSQGFITGSDLLIKRKSVVRITTGSQALDKLLGGGIETLCITEAFGEFRSGKTQLAHTLCVSTQLPIHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFSGRGELAERQQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDLKKPAGGHVLAHAATIRLMLRKGKGEQRVCKIFDAPNLPEGEAVFQVTSGGIMDAKD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr12 | 2061104 | 2061212 | - | OsLima_12g0003000.01 | OsLima_12g0003000.01,OsLima_12g0003000.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0143800 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g04980 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0143800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0003000 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0003240 | RBH | 0.0 | 0.783825 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0003230 | RBH | 0.0 | 0.0 | 0.482579 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0003040 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0003240 | RBH | 0.0 | 2.283388 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0038400 | RBH | 0.08022 | 0.466054 | 3.2961385 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0003220 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0041100 | RBH | 0.165415 | 0.6685545 | 2.0158295 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0003020 | RBH | 0.053991 | 0.190119 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0003220 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0003250 | RBH | 0.0 | 4.559033 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0003180 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0003150 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G003130 | SBH | 0.0 | 0.0 | 0.228902 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0003280 | RBH | 0.0 | 0.0 | 1.112565 |
