Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0003020 | OGI:11007100 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:2039683-2043982 | ||||||||
| Gene Symbol | DMC1B, OsDMC1B, OsDmc1B, Dmc1B, RiLIM15B, OsDMC1 | ||||||||||
| DNA seq | agtttaagaccgattgtataaattgtgcacgagcaggtacaaaaaatagtatctggggaaaccaacatgttaacctcttatattttcacttaagacaatactagcacttgtttcagtacaactgttgatcacataactcataatacccaatgtgagatataaccgtcttgataaatgaggttgcctctttcctcagcagtggcaaaaacatagcagcagcagtagttgtattcttttatcaatgtacctaacctatatggcctatgcagaaatttacttggagaaacctgaacaatttgaacacaggaagcaccctcagtgaacattcagtctttcgcatccattattccacctgatgttacctggaaaacgtgctattggtcaagggaaacaattttttttacaccacattattgctaatctgtcatgcgaagcttcagagtttcagtgatggaaaacaacaggtttttttttcagatgggaaaaacagcagctgcaagagttttgaggagaaagttcggacaaagaaaaaatcaatcaatattttagcagcatactgaaccaaggtaaccaattgaacaagtagtttcagtaaacatgtatgcacaatgcaaaaggatatagcttctccctcaggcaggttaggggcatcaaagatcttgcagacacgctgctctcctttgcctttcctcagcatcaaccggatggtggctgcatgcgccagaacgtggcctcccgcaggtttcttcgggtcagttatgaacattccaccacctgggtccgcaatcactgaaacaaagacacttgtaatttgaaattccttattgagttactctttcttgggatagacaggattagtcctgaaagcacaccttggttggtgatgtacactgcaacattgaactcctcagctatcttagtaaggcgggagagcatctgtgccaatttttgctgcaagttcagagtaattagtacataactttaggccttcaactactttatgattatttatttgtgtgtgttttagccaacacaaatattggcaatacctggcgctctgcaagttcacccctgccactgaaatcaacacggaatagtgcaatcacagaatccacaatctaattccaggtaaaacaatactaccacataagagattgagatacacaaacttatcaatgtatttttatgttaagccatgcctaccagaagcctgaaaggctcttcagccatcttggcagcgaggccaaggagcaagttgtactggtgctcataggtgtatgcacgagcatatatgatctaaacaagaaatagatgcaaatataacagatagcttcttttgttaggcctgaaatggtaaagtcaaattaagggccatacgttatcaagaacagcattggcatccatcccaaatctctcagcaattggcacaattcgttcaggccggctgaaaactccattaaggaaacaagttggagagatacagaaatgcaaataaatccattgaatggatggatcagatgaagctattgctaagtaaattcaaaagatacaatgttccctcagtgtcaatgtaagcaaccttcccgttccccccatgcatgtgaattggaagctgcagtttatgaacaaaaaaaaagaaaataattcactgaatctatggcagtaaggtggtgatgacaaaaacatgtattaaaaatgaacctgagtggagacacatagagtgtgagccaactgggtcttccctgatctgaggaccaaaaaagtgaaagattacaaagctaggaagccggaaccaaattgagaaatagtgaaaactaactccagagcacatcaaggttcaaagtttggctggctcacattaaaattaaatagtaagatgttttatgtgctacagaaatccaaattgttccacgcgatacaattctaggaagaactctatcatacatcaaatttgttgcaaaacaagataaatcagctaaatgtaatgtttagtagaaccaatttggtataacatcaaaggaaatagtttgacaatattgatgtgtatatacctgaagtttacaaatgagaagtacagtattaagttctcagttttagcagaacacagaacatgtttaggaattgctgtatgcactggcatgaatagacgatagaaatgggtgcacaacaggtttgaaaaggcactagcaaattaacttaaaccagaatactaatagtattagtaagcttgatttcaccatatttattagacaggtatggccacacatcataaatttcattgatacaaccaagctgcagttgtaaacgagggcaaaaaatatcaaaaggaacatgaacatctacgcaccggaactctccaaatgcctctgtgatgcagagtgtttcaatccctccttgaaaaattgaaaaatgcaagtagattagaacaacataatggaacaactgatcataacagagtcagaggactatatatgttaccgccaagcagctcatcaagtgcctggctcccagtggtgatccgaacaacagacttccgcttcaaaataagaaaaataataaaccgaacagcctagggaaagtgcacagctggagtaactaaaagcactctagcgtccatgaagcaaggaatagtttccacttatttgccataacaccatatccttaaatgcattagtacgcagatcagctcctattaacttaccttgataaggagatcacttcctgtcatgaagccctggctctgagaaaaacaaacatagcagtttcagaagaacaaatcatacagaactgacgtaatgaagatttcagaccaaaaacaatgcaaagagaaccacaccagaagcttttcagctgcttcacagatcttgtctacctttgcttcagataatcccttgattcctgtcaggctctacaagatggatccatatattgaaacaatatcagataattatattgtaagacagaaatgggacaattgaaagaatataatcgtcataaaccagaaatagaacaagtgggagatagcatgaagatttgggaacccaattttgcaaccttctttgtatgcatcatgaggccattgcaagtgtagataccagcatcctgcagcttcttcacatctccagagtttatcccttgcgagattactgtggacaagtgcacgagagatggataataatgcagagattatgctcaattgctcatagttcgaattcatggatatgaatgaataatttgcaggaagaaccatatgaagaatgaaatccagggagaagtcaggatcacaccaaaacaacttactaatattgaactcgctagaattagggagccaccagaaatcgtaaaagtacaagagggactcaagcttaaaccctaaaccctccaagtacacaactggttcaactaatatacactcaagttcaccaaaacacaactggttcaactaatgggcagaaccccacatgtttgaactagccgggggcgaattccgacgagttccaccaaacgcgggtaaaattgactgaaaatggggataaattcgaaccagccctctcacatgccacacatcgatcagcaggaaatagcccaaaacagatatcaaatgtggggaggcgaaaaatcccgaaaaaattggccacgatacgaggctaatttacctccagaacacacgaaattgagggagaaaaactagaagcaaccgaacacgcacagcacaaaacaaccagaccccaaaaaaaaatggaaacacaaaataggctagaatccatctacttcaccgcaaatcagcatcaaattacaatgtgaagagtaaccaatcgaaacgcaaggcagaatgagcactcgcacgcgcgaacacacacgcgcacacgagcacgagccaagcaatgcagtgccgggatacgagacgggggaggaggggatggagatgaggcggagggcgttacatacacttgtcgatggactcgaagcactcctcctcctcctcgatcctctctgcatccatgagctggagctgcccgccttcgtcgtactgcttggacggcgccatctgctcacacagaccccccgcacctgcgtcaaaatgcgatcaggagacaacccaaccgaaaaatcaccccaaaaccctagcaaagacgtcgagcggaggccgctgcggcggagagaaccttcctcacctgtaggcggaggcggccggcgaccggcgacggcgaggtcggagcggcggcttggaggagaaggaagcagcagaggcgagacgacaaacacactcgaagtggtgttgtgcttgtgccgttgcgtt
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| CDS seq | atggcgccgtccaagcagtacgacgaaggcgggcagctccagctcatggatgcagagaggatcgaggaggaggaggagtgcttcgagtccatcgacaagttaatctcgcaagggataaactctggagatgtgaagaagctgcaggatgctggtatctacacttgcaatggcctcatgatgcatacaaagaagagcctgacaggaatcaagggattatctgaagcaaaggtagacaagatctgtgaagcagctgaaaagcttctgagccagggcttcatgacaggaagtgatctccttatcaagcggaagtctgttgttcggatcaccactgggagccaggcacttgatgagctgcttggcggagggattgaaacactctgcatcacagaggcatttggagagttccgatcagggaagacccagttggctcacactctatgtgtctccactcagcttccaattcacatgcatggggggaacgggaaggttgcttacattgacactgagggaacattccggcctgaacgaattgtgccaattgctgagagatttgggatggatgccaatgctgttcttgataacatcatatatgctcgtgcatacacctatgagcaccagtacaacttgctccttggcctcgctgccaagatggctgaagagcctttcaggcttctgattgtggattctgtgattgcactattccgtgttgatttcagtggcaggggtgaacttgcagagcgccagcaaaaattggcacagatgctctcccgccttactaagatagctgaggagttcaatgttgcagtgtacatcaccaaccaagtgattgcggacccaggtggtggaatgttcataactgacccgaagaaacctgcgggaggccacgttctggcgcatgcagccaccatccggttgatgctgaggaaaggcaaaggagagcagcgtgtctgcaagatctttgatgcccctaacctgcctgagggagaagctatatccttttgcattcacgttttccaggtaacatcaggtggaataatggatgcgaaagactga
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| Protein seq | MAPSKQYDEGGQLQLMDAERIEEEEECFESIDKLISQGINSGDVKKLQDAGIYTCNGLMMHTKKSLTGIKGLSEAKVDKICEAAEKLLSQGFMTGSDLLIKRKSVVRITTGSQALDELLGGGIETLCITEAFGEFRSGKTQLAHTLCVSTQLPIHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFSGRGELAERQQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLRKGKGEQRVCKIFDAPNLPEGEAISFCIHVFQVTSGGIMDAKD |
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| Function | Meiotic recombination protein DMC1 homolog B [UniProtKB/Swiss-Prot:Q7GBF7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0003020 | OsLima_11g0003020.01 | Chr11 | 2039683 | 2043982 | - | NAM | ||
| CDS seq | atggcgccgtccaagcagtacgacgaaggcgggcagctccagctcatggatgcagagaggatcgaggaggaggaggagtgcttcgagtccatcgacaagttaatctcgcaagggataaactctggagatgtgaagaagctgcaggatgctggtatctacacttgcaatggcctcatgatgcatacaaagaagagcctgacaggaatcaagggattatctgaagcaaaggtagacaagatctgtgaagcagctgaaaagcttctgagccagggcttcatgacaggaagtgatctccttatcaagcggaagtctgttgttcggatcaccactgggagccaggcacttgatgagctgcttggcggagggattgaaacactctgcatcacagaggcatttggagagttccgatcagggaagacccagttggctcacactctatgtgtctccactcagcttccaattcacatgcatggggggaacgggaaggttgcttacattgacactgagggaacattccggcctgaacgaattgtgccaattgctgagagatttgggatggatgccaatgctgttcttgataacatcatatatgctcgtgcatacacctatgagcaccagtacaacttgctccttggcctcgctgccaagatggctgaagagcctttcaggcttctgattgtggattctgtgattgcactattccgtgttgatttcagtggcaggggtgaacttgcagagcgccagcaaaaattggcacagatgctctcccgccttactaagatagctgaggagttcaatgttgcagtgtacatcaccaaccaagtgattgcggacccaggtggtggaatgttcataactgacccgaagaaacctgcgggaggccacgttctggcgcatgcagccaccatccggttgatgctgaggaaaggcaaaggagagcagcgtgtctgcaagatctttgatgcccctaacctgcctgagggagaagctgttttccaggtaacatcaggtggaataatggatgcgaaagactga
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| Protein seq | MAPSKQYDEGGQLQLMDAERIEEEEECFESIDKLISQGINSGDVKKLQDAGIYTCNGLMMHTKKSLTGIKGLSEAKVDKICEAAEKLLSQGFMTGSDLLIKRKSVVRITTGSQALDELLGGGIETLCITEAFGEFRSGKTQLAHTLCVSTQLPIHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFSGRGELAERQQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLRKGKGEQRVCKIFDAPNLPEGEAVFQVTSGGIMDAKD
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0003020 | OsLima_11g0003020.02 | Chr11 | 2039730 | 2043945 | - | NAM | ||
| CDS seq | atggcgccgtccaagcagtacgacgaaggcgggcagctccagctcatggatgcagagaggatcgaggaggaggaggagtgcttcgagtccatcgacaagttaatctcgcaagggataaactctggagatgtgaagaagctgcaggatgctggtatctacacttgcaatggcctcatgatgcatacaaagaagagcctgacaggaatcaagggattatctgaagcaaaggtagacaagatctgtgaagcagctgaaaagcttctgagccagggcttcatgacaggaagtgatctccttatcaagcggaagtctgttgttcggatcaccactgggagccaggcacttgatgagctgcttggcggagggattgaaacactctgcatcacagaggcatttggagagttccgatcagggaagacccagttggctcacactctatgtgtctccactcagcttccaattcacatgcatggggggaacgggaaggttgcttacattgacactgagggaacattccggcctgaacgaattgtgccaattgctgagagatttgggatggatgccaatgctgttcttgataacatcatatatgctcgtgcatacacctatgagcaccagtacaacttgctccttggcctcgctgccaagatggctgaagagcctttcaggcttctgattgtggattctgtgattgcactattccgtgttgatttcagtggcaggggtgaacttgcagagcgccagcaaaaattggcacagatgctctcccgccttactaagatagctgaggagttcaatgttgcagtgtacatcaccaaccaagtgattgcggacccaggtggtggaatgttcataactgacccgaagaaacctgcgggaggccacgttctggcgcatgcagccaccatccggttgatgctgaggaaaggcaaaggagagcagcgtgtctgcaagatctttgatgcccctaacctgcctgagggagaagctatatccttttgcattcacgttttccaggtaacatcaggtggaataatggatgcgaaagactga
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| Protein seq | MAPSKQYDEGGQLQLMDAERIEEEEECFESIDKLISQGINSGDVKKLQDAGIYTCNGLMMHTKKSLTGIKGLSEAKVDKICEAAEKLLSQGFMTGSDLLIKRKSVVRITTGSQALDELLGGGIETLCITEAFGEFRSGKTQLAHTLCVSTQLPIHMHGGNGKVAYIDTEGTFRPERIVPIAERFGMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFSGRGELAERQQKLAQMLSRLTKIAEEFNVAVYITNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLMLRKGKGEQRVCKIFDAPNLPEGEAISFCIHVFQVTSGGIMDAKD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.053991 | 0.190119 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0146800 | RBH | 0.166799 | 0.683089 | 1.016479 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g04954 | RBH | 0.108329 | 0.441227 | 0.251292 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0146800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0003140 | RBH | 0.0 | 0.000000 | 1.467504 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0003200 | RBH | 0.0 | 0.000000 | 0.422851 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0003140 | RBH | 0.416317 | 1.438180 | 1.142835 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0003070 | RBH | 0.045725 | 0.063616 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0003070 | RBH | 1.295432 | 2.292890 | 3.265844 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0040200 | RBH | 0.7976195 | 2.259513 | 2.519339 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0003140 | RBH | 0.000000 | 0.0 | 0.080664 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0038400 | RBH | 1.005013 | 3.6679785 | 3.837107 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0003000 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0003150 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0003130 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0003060 | RBH | 0.122151 | 0.0 | 0.188843 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0003150 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G003130 | RBH | 0.0 | 0.0 | 0.228902 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0003140 | RBH | 0.0 | 0.0 | 0.0 |
