Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0000410 | OGI:12000980 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:318845-320804 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cagaggcgcagcaggaagaagactagaagagggagggcgactcagacgacgacgacgaaggagtcggaatcggagaaggaagatgccttgcctcaacgtgtcgaccaacgtgaacctggatggggtggacacctccgccgtcctcgccgacgcctccaagaccgtcgccaccatcatcggcaagcccgaggccgtacgctcctccccttttcctcttcttctctacccatacccaccctaggttttggcgtgcttcgttcttcatgctccattcctagcttgcagctatcttttggtggattggcaccttatagtggatttatcactcttccgtctactcgagGAgAGGATTAGAGTTTAAGTGCCCCCATCGATCTTTGGCGTGTAACTGTTGAAATTGGGAATTCGATTCTAGTTTAGGTAGGAACTAAGAACATCTCCAAGTGCATAAATGCTCACCTCTCAACTAGTGTCAAATATGGTGATTTTCACATGGGAATACAGCCATAGGTCCACCGACGAAACTGGGAGAGGGCAGACCAAAGTTCTTATTCTTCTTGGAATTTAGGACTTCCTTTACAAATTTGCTAGTTATTTTGAGTAGCGAGCGCCCCCCCCCCCTCCCCCCCCAAAAAAAAAATCAAATACTCAATTTTTTGAGTTTTTCCATTTGATTCAGCAAATAGAAAATTATCTTTTATGCATAATCTCAATGTATACATCAGAAACTAAAAaatgcttgtaagctgtgacatcttcaaccacttactccagattttactttttcaaagaacatgttgattcgatgtttgatgtatcagaaatagctagattttttgctagtgggctggaaaaatggcaaatatttgttgttacttcaatgtcagacttgtcttatgtaaaattgaaaattaacttcagtttatgttttggtcttctgttgacagcacaaaatgaagctattttgcatcacctttgttgttgacatactaatcagagtgcttaatgctttttctttccacagtatgtgatggttgttctcaagggttcagtgcctatggcatttggaggtacccaggagcctgccgcttatggcgagctggtttccattggagggctgaaccctgacgtcaacaagaagctgagtgctggcattgcctctatcctggagtcaaagctgtccattcccaagggccgcttctatctcaagttctacgattccaaagtaagcagaccccatttcttattgattgttcatccatgggtcttcatAAAaaccatacagtcatgttctcattgcatctttgctgtttgttaggcccatcgtgcacaagaacatgctcaatgtttgcatgctttgcatcaagaatagatcaatgtaaatgggccatctgttgtttgtttaatgccaacattttggcttttgcagtttagttcctctctgtagttgacaatatcctaggcacaacacatatacttttccatgctaattatgagcactaatAaatctttctttacgtagcgctcggactttggatggaatggcaccaccttttaggttaaatggtatggcttcaagaatcttggaacctactccctccatcccaaaatgtttgacgccgttgacttttttaaaaatgtttgaccattcgtcttattcAAaaaaaattaagtaattattaattcttttcctatcatttgatttattgttaaatatacttttatgtatacAtatagttttacacatttcataaaattttttgaataagacgaatggttaaacatgtttaaaaaagtcaactgtgtcaaacatttagggaaggagggagtaataattcctaatgccttgttcattgcctatttgaggacaatgcagtcagctgtatcagtgtaatgtgtactagtctcgagtgaacctggaaatatgcttctgaatgcaacttggcatgcttgagttgag
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| CDS seq | atgccttgcctcaacgtgtcgaccaacgtgaacctggatggggtggacacctccgccgtcctcgccgacgcctccaagaccgtcgccaccatcatcggcaagcccgaggcctatgtgatggttgttctcaagggttcagtgcctatggcatttggaggtacccaggagcctgccgcttatggcgagctggtttccattggagggctgaaccctgacgtcaacaagaagctgagtgctggcattgcctctatcctggagtcaaagctgtccattcccaagggccgcttctatctcaagttctacgattccaaagcccatcgtgcacaagaacatgctcaatgtttgcatgctttgcatcaagaatag |
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| Protein seq | MPCLNVSTNVNLDGVDTSAVLADASKTVATIIGKPEAYVMVVLKGSVPMAFGGTQEPAAYGELVSIGGLNPDVNKKLSAGIASILESKLSIPKGRFYLKFYDSKAHRAQEHAQCLHALHQE |
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| Function | Macrophage migration inhibitory factor homolog [UniProtKB/Swiss-Prot:P81748] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0000410 | OsLima_12g0000410.01 | Chr12 | 318853 | 320216 | + | NAM | ||
| CDS seq | atgccttgcctcaacgtgtcgaccaacgtgaacctggatggggtggacacctccgccgtcctcgccgacgcctccaagaccgtcgccaccatcatcggcaagcccgaggcctatgtgatggttgttctcaagggttcagtgcctatggcatttggaggtacccaggagcctgccgcttatggcgagctggtttccattggagggctgaaccctgacgtcaacaagaagctgagtgctggcattgcctctatcctggagtcaaagctgtccattcccaagggccgcttctatctcaagttctacgattccaaagcccatcgtgcacaagaacatgctcaatgtttgcatgctttgcatcaagaatag
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| Protein seq | MPCLNVSTNVNLDGVDTSAVLADASKTVATIIGKPEAYVMVVLKGSVPMAFGGTQEPAAYGELVSIGGLNPDVNKKLSAGIASILESKLSIPKGRFYLKFYDSKAHRAQEHAQCLHALHQE |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0000410 | OsLima_12g0000410.02 | Chr12 | 318845 | 320804 | + | IsoSeq | ||
| CDS seq | atggcaccaccttttaggttaaatggtatggcttcaagaatcttggaacctactccctccatcccaaaatgtttgacgccgttgacttttttaaaaatgtttgaccattcgtcttattcAAaaaaaatt |
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| Protein seq | MAPPFRLNGMASRILEPTPSIPKCLTPLTFLKMFDHSSYSKKI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| AL | Chr12 | 320069 | 320804 | + | OsLima_12g0000410.01 | OsLima_12g0000410.01,OsLima_12g0000410.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.293772 | 0.288946 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0107500 | RBH | 0.304073 | 0.886809 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g01600 | RBH | 2.553841 | 2.133931 | 1.693833 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0107500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0000400 | RBH | 0.449785 | 25.389366 | 1.271867 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0000590 | RBH | 0.000000 | 3.367481 | 1.866302 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0000560 | RBH | 0.728060 | 2.616739 | 0.684758 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0000420 | RBH | 0.086441 | 0.105061 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0000530 | SBH | 20.966763 | 9.491658 | 37.802696 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0006200 | SBH | 3.6285175 | 2.73011 | 2.837749 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0000520 | SBH | 0.952387 | 0.762886 | 0.653226 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0006400 | RBH | 7.251355 | 4.003403 | 11.1398355 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0000400 | RBH | 0.631108 | 0.154788 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0000530 | SBH | 2.370515 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0000520 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0000530 | SBH | 0.776088 | 0.0 | 0.270894 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0000540 | SBH | 0.279447 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G000540 | SBH | 2.273106 | 0.000000 | 4.780027 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0000530 | SBH | 3.925816 | 17.064875 | 13.411567 |
