Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0025060 | OGI:11061890 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:31111115-31114360 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcagagatttccctcctcccgtatagtgtagcggaacggcataccactagttctttcccattggcgtgcagcctcgaggaagtcccgggtgatctctagaaaggatagtagactgagcgagaggtgctcgatgtcacgcgggatgtctatcatgccgatgaggttgactaataccagccttttcagcttctctatggcaccttgttgtatgtccagctgcctcagattaggcatgtctcgcaacgtgagcttatcgagtttaggaaaccacccctggcgaaacaccagcttatgtccgtggtatgctctggttaagtttaggtccgtgaggcttgagaaccgggagagggatggcagcgggctctcttctagccgggaccaagatagatccaccgaccgcaaatgcttttgaccctctgctactgccagcatgcctatctgtgccaatcgcccacgcaatcttagcttttgaaggtttggaggcagtgggtttagatcgttcagttccaggatttcaccctcatcacttgctatgatgtctaagcaggttaaaaattccatccgacgcaaggactcgtaaagggccttacagtagtctctcttaacgttacataccctcaggcttctcatctgcctcatctctcccaagatcctcacggacccctcgtcgtacgcttccattgttatcattgtctgtagctccctcagcttctcctccaagctcttggggatgcgtacaccattgcaccaccggagttctcgaccatatctatccttcacttccccaacaaacaagtgcctaagcttctttagcttaacgatccctctaggcagctcatgtatttcagattcaaagaggtctaatgtcagcaagtgggaaagcttctcgatcgaccttggtagcagcttcaccttggagcctcgcaggcctagatggcgcaggttgaacagattaccaatagcatcaggaaccttgtcaataggcagcccacttaactcaagtaccgacatatatctagtattatccggtataaaagaaagcgacatttttttgtccaacgcaatgacagaccggaggtggcgggcacctgaaatcgcttcaacaatatccccgtccaggttgtgtattaccatccgaggctcgtctatttcctcagcagattccccatgcctatctttggcactatatgcaacaccaaaacactccctccgacataaattaactgccagctcgcgcttcatatcatgtactgtaaatgtttttatcctaccgaatgagttagatttcacaacttgtagcatgcccatctcaaccaattcctggagatacccttctgccacttcctccattatgtttccacctctctcttgcacgaagccctctgctatccaccagcgcacaaccctctttctcctaaaatgatagccctctggaaacaaaccgcaatacaggaagcaacttttcagatgtgctggaaggtagatgtagctgaagttaaggatattcctgataggttctaggcttgggttgttgcttatctcccagtcaagctgtttatatatgcgcctaaacaccacttcgctcttgtcacggacaaacaggagcttgcctatagagacaattgcaagaggtaCccctttgcacctttcaactatatcatttgatacccctatcagattttgggggcacttatctttaagaaaaattgtcttattgaagagctcccgtgacttttcatctgataatttctccaatgttattgtcctgccttgggaagcacgtgcagctacatctctaacacgtgtggtgacaacaactctacttcccttctggtttgaagcaaatgttccgagcaattcatgaactgcttctaatgtccaaacatcatctagtacaatcaaatacttacggaccattaggaagtcccgcagttcagcttgaagatgtccagtatccatgttgtcaatgtttctagtatgtattatagcctgtccatagagttggttgatcaaacaTtttagtacgtccttgatggaataggtttgagagatgttgacccaggcgtggcactgaaagtttttcttgttgttcttgtagacatttgctgccaaagttgttttaccgagacctcccatcccatacaacactatcaccttacgttccatttcatcacctaccagctggggtgggcctaggccctgggaatcctgggcctgtgccaaagtagattggcttggcgtactagtggcagtttcggcctggtcctgtgccgaagtaggctggTttggtgttgtggtagtttcggcctgggtctgagctgaagtaggctggtttgttgttgtggcagtttcggcctgggcctgtgctgaagtaggagtaggctggtttggtgctgtggcagtttcggcctgggtctgtgccaaagtaggctggtttggtgttgtggtagtttcggcctggacctgtgccgaagtaagctggTttggtgttgtgatagtttcggcctGggcttgtgctgaagtaggttggtttggtgttgtagtagtttcggcctgggcctgtgccgaagtaggagtaggttggtttggtgttgtggcagtttcggcttgggtctgtgccgaagtaggctggtttggcgttgtggtcgtttctaccctgcctagcaaccagtcagagagtctttttctgttcccgtccacccccacaagatcttcttcactgagggagcgtgaaatgtttgcgagatgttgggaactctcaacgatgtagcttgaaccttctccattggtatccccctcatctgccattgatacccatcggcgtttggcctgaaacaagtgcaccaaattggcctctgcatcattaattgatgatgctatcctgtttaaagatatcaaaacatttggcctctttaatcctttcttcagataggtaccccatccagtgtcaggtttgtgaccaatgaggtgcaagtagtcatccacgatgtcctcgattacatgcacttgcactctcatctcctccacccagatttcatacatccggtttttgcgattgcggacatccattcgggaaagaaattcaagcattagcctgagttctgtcctgacgcgccccatgctaccttgaagctgcgtgagctgcgtaacaaatgtattgaaatatgaagcggattgcttgatagcttccgtccccagggcaacaccaatcTtcttcaaaactaaaagaatcacagcttcagccat
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| CDS seq | atggctgaagctgtgattcttttagttttgaagaAgattggtgttgccctggggacggaagctatcaagcaatccgcttcatatttcaatacatttgttacgcagctcacgcagcttcaaggtagcatggggcgcgtcaggacagaactcaggctaatgcttgaatttctttcccgaatggatgtccgcaatcgcaaaaaccggatgtatgaaatctgggtggaggagatgagagtgcaagtgcatgtaatcgaggacatcgtggatgactacttgcacctcattggtcacaaacctgacactggatggggtacctatctgaagaaaggattaaagaggccaaatgttttgatatctttaaacaggatagcatcatcaattaatgatgcagaggccaatttggtgcacttgtttcaggccaaacgccgatgggtatcaatggcagatgagggggataccaatggagaaggttcaagctacatcgttgagagttcccaacatctcgcaaacatttcacgctccctcagtgaagaagatcttgtgggggtggacgggaacagaaaaagactctctgactggttgctaggcagggcccaggccgaaactgccacaacaacaaaccagcctacttcagctcagacccaggccgaaactaccacaacaccaaAccagcctacttcggcacaggaccaggccgaaactgccactagtacgccaagccaatctactttggcacaggcccaggattcccagggcctaggcccaccccagctggtaggtgatgaaatggaacgtaaggtgatagtgttgtatgggatgggaggtctcggtaaaacaactttggcagcaaatgtctacaagaacaacaagaaaaactttcagtgccacgcctgggtcaacatctctcaaacctattccatcaaggacgtactaaaAtgtttgatcaaccaactctatggacaggctataatacatactagaaacattgacaacatggatactggacatcttcaagctgaactgcgggacttcctaatggtccgtaagtatttgattgtactagatgatgtttggacattagaagcagttcatgaattgctcggaacatttgcttcaaaccagaagggaagtagagttgttgtcaccacacgtgttagagatgtagctgcacgtgcttcccaaggcaggacaataacattggagaaattatcagatgaaaagtcacgggagctcttcaataagacaatttttcttaaagataagtgcccccaaaatctgataggggtatcaaatgatatagttgaaaggtgcaaagggGtacctcttgcaattgtctctataggcaagctcctgtttgtccgtgacaagagcgaagtggtgtttaggcgcatatataaacagcttgactgggagataagcaacaacccaagcctagaacctatcaggaatatccttaacttcagctacatctaccttccagcacatctgaaaagttgcttcctgtattgcggtttgtttccagagggctatcattttaggagaaagagggttgtgcgctggtggatagcagagggcttcgtgcaagagagaggtggaaacataatggaggaagtggcagaagggtatctccaggaattggttgagatgggcatgctacaagttgtgaaatctaactcattcggtaggataaaaacatttacagtacatgatatgaagcgcgagctggcagttaatttatgtcggagggagtgttttggtgttgcatatagtgccaaagataggcatggggaatctgctgaggaaatagacgagcctcggatggtaatacacaacctggacggggatattgttgaagcgatttcaggtgcccgccacctccggtctgtcattgcgttggacaaaaaaatgtcgctttcttttataccggataatactagatatatgtcggtacttgagttaagtgggctgcctattgacaaggttcctgatgctattggtaatctgttcaacctgcgccatctaggcctgcgaggctccaaggtgaagctgctaccaaggtcgatcgagaagctttcccacttgctgacattagacctctttgaatctgaaatacatgagctgcctagagggatcgttaagctaaagaagcttaggcacttgtttgttggggaagtgaaggatagatatggtcgagaactccggtggtgcaatggtgtacgcatccccaagagcttggaggagaagctgagggagctacagacaatgataacaatggaagcgtacgacgaggggtccgtgaggatcttgggagagatgaggcagatgagaagcctgagggtatgtaacgttaagagagactactgtaaggccctttacgagtccttgcgtcggatggaatttttaacctgcttagacatcatagcaagtgatgagggtgaaatcctggaactgaacgatctaaacccactgcctccaaaccttcaaaagctaagattgcgtgggcgattggcacagataggcatgctggcagtagcagagggtcaaaagcatttgcggtcggtggatctatcttggtcccggctagaagagagcccgctgccatccctctcccggttctcaagcctcacggacctaaacttaaccagagcataccacggacataagctggtgtttcgccaggggtggtttcctaaactcgataagctcacgttgcgagacatgcctaatctgaggcagctggacatacaacaaggtgccatagagaagctgaaaaggctggtattagtcaacctcatcggcatgatagacatcccgcgtgacatcgagcacctctcgctcagtctactatcctttctagagatcacccgggacttcctcgaggctgcacgccaatgggaaagaactagtggtatgccgttccgctacactatacgggaggagggaaatctctga
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| Protein seq | MAEAVILLVLKKIGVALGTEAIKQSASYFNTFVTQLTQLQGSMGRVRTELRLMLEFLSRMDVRNRKNRMYEIWVEEMRVQVHVIEDIVDDYLHLIGHKPDTGWGTYLKKGLKRPNVLISLNRIASSINDAEANLVHLFQAKRRWVSMADEGDTNGEGSSYIVESSQHLANISRSLSEEDLVGVDGNRKRLSDWLLGRAQAETATTTNQPTSAQTQAETTTTPNQPTSAQDQAETATSTPSQSTLAQAQDSQGLGPPQLVGDEMERKVIVLYGMGGLGKTTLAANVYKNNKKNFQCHAWVNISQTYSIKDVLKCLINQLYGQAIIHTRNIDNMDTGHLQAELRDFLMVRKYLIVLDDVWTLEAVHELLGTFASNQKGSRVVVTTRVRDVAARASQGRTITLEKLSDEKSRELFNKTIFLKDKCPQNLIGVSNDIVERCKGVPLAIVSIGKLLFVRDKSEVVFRRIYKQLDWEISNNPSLEPIRNILNFSYIYLPAHLKSCFLYCGLFPEGYHFRRKRVVRWWIAEGFVQERGGNIMEEVAEGYLQELVEMGMLQVVKSNSFGRIKTFTVHDMKRELAVNLCRRECFGVAYSAKDRHGESAEEIDEPRMVIHNLDGDIVEAISGARHLRSVIALDKKMSLSFIPDNTRYMSVLELSGLPIDKVPDAIGNLFNLRHLGLRGSKVKLLPRSIEKLSHLLTLDLFESEIHELPRGIVKLKKLRHLFVGEVKDRYGRELRWCNGVRIPKSLEEKLRELQTMITMEAYDEGSVRILGEMRQMRSLRVCNVKRDYCKALYESLRRMEFLTCLDIIASDEGEILELNDLNPLPPNLQKLRLRGRLAQIGMLAVAEGQKHLRSVDLSWSRLEESPLPSLSRFSSLTDLNLTRAYHGHKLVFRQGWFPKLDKLTLRDMPNLRQLDIQQGAIEKLKRLVLVNLIGMIDIPRDIEHLSLSLLSFLEITRDFLEAARQWERTSGMPFRYTIREEGNL |
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| Function | Disease resistance protein RPM1 [UniProtKB/Swiss-Prot:Q39214] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0025060 | OsLima_11g0025060.01 | Chr11 | 31111115 | 31114360 | - | NAM | ||
| CDS seq | atggctgaagctgtgattcttttagttttgaagaAgattggtgttgccctggggacggaagctatcaagcaatccgcttcatatttcaatacatttgttacgcagctcacgcagcttcaaggtagcatggggcgcgtcaggacagaactcaggctaatgcttgaatttctttcccgaatggatgtccgcaatcgcaaaaaccggatgtatgaaatctgggtggaggagatgagagtgcaagtgcatgtaatcgaggacatcgtggatgactacttgcacctcattggtcacaaacctgacactggatggggtacctatctgaagaaaggattaaagaggccaaatgttttgatatctttaaacaggatagcatcatcaattaatgatgcagaggccaatttggtgcacttgtttcaggccaaacgccgatgggtatcaatggcagatgagggggataccaatggagaaggttcaagctacatcgttgagagttcccaacatctcgcaaacatttcacgctccctcagtgaagaagatcttgtgggggtggacgggaacagaaaaagactctctgactggttgctaggcagggcccaggccgaaactgccacaacaacaaaccagcctacttcagctcagacccaggccgaaactaccacaacaccaaAccagcctacttcggcacaggaccaggccgaaactgccactagtacgccaagccaatctactttggcacaggcccaggattcccagggcctaggcccaccccagctggtaggtgatgaaatggaacgtaaggtgatagtgttgtatgggatgggaggtctcggtaaaacaactttggcagcaaatgtctacaagaacaacaagaaaaactttcagtgccacgcctgggtcaacatctctcaaacctattccatcaaggacgtactaaaAtgtttgatcaaccaactctatggacaggctataatacatactagaaacattgacaacatggatactggacatcttcaagctgaactgcgggacttcctaatggtccgtaagtatttgattgtactagatgatgtttggacattagaagcagttcatgaattgctcggaacatttgcttcaaaccagaagggaagtagagttgttgtcaccacacgtgttagagatgtagctgcacgtgcttcccaaggcaggacaataacattggagaaattatcagatgaaaagtcacgggagctcttcaataagacaatttttcttaaagataagtgcccccaaaatctgataggggtatcaaatgatatagttgaaaggtgcaaagggGtacctcttgcaattgtctctataggcaagctcctgtttgtccgtgacaagagcgaagtggtgtttaggcgcatatataaacagcttgactgggagataagcaacaacccaagcctagaacctatcaggaatatccttaacttcagctacatctaccttccagcacatctgaaaagttgcttcctgtattgcggtttgtttccagagggctatcattttaggagaaagagggttgtgcgctggtggatagcagagggcttcgtgcaagagagaggtggaaacataatggaggaagtggcagaagggtatctccaggaattggttgagatgggcatgctacaagttgtgaaatctaactcattcggtaggataaaaacatttacagtacatgatatgaagcgcgagctggcagttaatttatgtcggagggagtgttttggtgttgcatatagtgccaaagataggcatggggaatctgctgaggaaatagacgagcctcggatggtaatacacaacctggacggggatattgttgaagcgatttcaggtgcccgccacctccggtctgtcattgcgttggacaaaaaaatgtcgctttcttttataccggataatactagatatatgtcggtacttgagttaagtgggctgcctattgacaaggttcctgatgctattggtaatctgttcaacctgcgccatctaggcctgcgaggctccaaggtgaagctgctaccaaggtcgatcgagaagctttcccacttgctgacattagacctctttgaatctgaaatacatgagctgcctagagggatcgttaagctaaagaagcttaggcacttgtttgttggggaagtgaaggatagatatggtcgagaactccggtggtgcaatggtgtacgcatccccaagagcttggaggagaagctgagggagctacagacaatgataacaatggaagcgtacgacgaggggtccgtgaggatcttgggagagatgaggcagatgagaagcctgagggtatgtaacgttaagagagactactgtaaggccctttacgagtccttgcgtcggatggaatttttaacctgcttagacatcatagcaagtgatgagggtgaaatcctggaactgaacgatctaaacccactgcctccaaaccttcaaaagctaagattgcgtgggcgattggcacagataggcatgctggcagtagcagagggtcaaaagcatttgcggtcggtggatctatcttggtcccggctagaagagagcccgctgccatccctctcccggttctcaagcctcacggacctaaacttaaccagagcataccacggacataagctggtgtttcgccaggggtggtttcctaaactcgataagctcacgttgcgagacatgcctaatctgaggcagctggacatacaacaaggtgccatagagaagctgaaaaggctggtattagtcaacctcatcggcatgatagacatcccgcgtgacatcgagcacctctcgctcagtctactatcctttctagagatcacccgggacttcctcgaggctgcacgccaatgggaaagaactagtggtatgccgttccgctacactatacgggaggagggaaatctctga
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| Protein seq | MAEAVILLVLKKIGVALGTEAIKQSASYFNTFVTQLTQLQGSMGRVRTELRLMLEFLSRMDVRNRKNRMYEIWVEEMRVQVHVIEDIVDDYLHLIGHKPDTGWGTYLKKGLKRPNVLISLNRIASSINDAEANLVHLFQAKRRWVSMADEGDTNGEGSSYIVESSQHLANISRSLSEEDLVGVDGNRKRLSDWLLGRAQAETATTTNQPTSAQTQAETTTTPNQPTSAQDQAETATSTPSQSTLAQAQDSQGLGPPQLVGDEMERKVIVLYGMGGLGKTTLAANVYKNNKKNFQCHAWVNISQTYSIKDVLKCLINQLYGQAIIHTRNIDNMDTGHLQAELRDFLMVRKYLIVLDDVWTLEAVHELLGTFASNQKGSRVVVTTRVRDVAARASQGRTITLEKLSDEKSRELFNKTIFLKDKCPQNLIGVSNDIVERCKGVPLAIVSIGKLLFVRDKSEVVFRRIYKQLDWEISNNPSLEPIRNILNFSYIYLPAHLKSCFLYCGLFPEGYHFRRKRVVRWWIAEGFVQERGGNIMEEVAEGYLQELVEMGMLQVVKSNSFGRIKTFTVHDMKRELAVNLCRRECFGVAYSAKDRHGESAEEIDEPRMVIHNLDGDIVEAISGARHLRSVIALDKKMSLSFIPDNTRYMSVLELSGLPIDKVPDAIGNLFNLRHLGLRGSKVKLLPRSIEKLSHLLTLDLFESEIHELPRGIVKLKKLRHLFVGEVKDRYGRELRWCNGVRIPKSLEEKLRELQTMITMEAYDEGSVRILGEMRQMRSLRVCNVKRDYCKALYESLRRMEFLTCLDIIASDEGEILELNDLNPLPPNLQKLRLRGRLAQIGMLAVAEGQKHLRSVDLSWSRLEESPLPSLSRFSSLTDLNLTRAYHGHKLVFRQGWFPKLDKLTLRDMPNLRQLDIQQGAIEKLKRLVLVNLIGMIDIPRDIEHLSLSLLSFLEITRDFLEAARQWERTSGMPFRYTIREEGNL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.232610 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0682501 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g47447 | SBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0682501 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0017520 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023640 | SBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0017460 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0017080 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0443100 | SBH | 0 | 0.118554 | 0.0080805 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0017850 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0433600 | RBH | 0.1410005 | 0.0522 | 0.3652125 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0017070 | SBH | 0.168214 | 0.147196 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0017710 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0017240 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0023180 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0017270 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G017240 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023910 | SBH | 0.0 | 0.0 | 0.0 |
