Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0022590 | OGI:11063960 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:28350629-28354905 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcaatctgaaccgcacgcacctgatccaacggctagtagtgtcccaggaggggtagcaagaacacacgctgtgcttccgtactgtacctcgccgtcgtcgagcaccattgaaccagaagtccagaaggtggcggcggcggcggcGgaggacgacgacgacgaagaagaagaaggcgacgagggattctacagaaggagagggtgagatgtctatgaggtagatgcaaggtcgaagggcggacaacggctgcctgctgcccggcgacgaggaggaatgagtgttggggtggtagggtttctcatgcgctctgcaactcgatgctttgcgctttgtttgtcatcatcggacagcgggatatgtatctgcatgtgtctcatcggatttggagggggtagagatttcttgtttgttgtttcgcctcggccagattcggtggagggatttcccccttttgctgttccaattaaaaaacaaagagttgcttttgcaaattaggggaatcattgaggatgttttaatgtcgctcgcctgtgctctgatggaagattacaagtaactacttctgtaaatcttgcaggaatctgaggggctgaggaaaggaagccgcatccagcagtattgtcactggctcacagcaatttctcctaaatttctgatgattatgtctaaacaagttaacaactcttatttgagactggtggttactgtattggtgggggggggggttcggaggcaagcgcattgatgtcaagtttgcagccaccaaaCactggtgattcatcttgtacgtctcttgactctgaatttctgatacaactttatcagttttatcagttgcttagcaaacatttagttggaagttggagtttggaggaatattgtctttgggggaacaatgccatatatatgattaattgtcaaggattgtcaatagctaattgggtgagaagccagaatgttatcccggacattgggcaattcagaattggatgttttatgatcatgcaaatttttgggaactcgatctatcgatgcattaaggggaaagaataaactttaggcagcaacacaaggttttgcttgtacaaggcagataacatataccatgggactgtgaataaggagttcattcaaaagtctcagtaattaatgatacaagagagctgaaccatgacaattgggatggaagacacaagcattctaaacaacgcagaacattgacacactgaataagtacaatattggcctgataatagacgccacgaaagaggaggaagatcaggccccccttttggcatctttattccttggaactagaagtagcagtggtggtaatacttaacaagtagtgggagcagcagcatcaactagaagcagctataactcctgatctttcgtcgttctctggtgggttgagcttgagagaaatacggctacggtatggagcaatgtctttttctagtgcttttaaaccatcttcaagacatattcccccattgagctcaaggtgtgttagcttcatgaggttttggacccctgaaagcatctccatttcggtaaaacaccaaaccatcttattgagtttaagggctgtcccaggagcaaaggtgatgctgataagaacattatctctgatttcaagatcagtgagattattgaactgtccacttctgaaagtgagagcaccttctgcgaacgaatggtagcggagtctgagagagcggagccctctgagtgtgccgagtatgttgagagcatcctctttcagaaaagtgtcacgtagagttatcttggcaagttgatgaagctccttgatcctgggaggcaacctgcttatgatgttgcagatgtgtaggctttctagaagccttgggggtctcagtaaaatagcatcaatcgcatcccagctacctgaagtttccattcggattgacaacgattggagcttcctatggagtttatcaacctgaatgaacaaatctttcaaggtagctttctcaccagatagaacaacaccaagcttcttcaactgccctagtttgtcaccaatgtcgaccagctccttggcactgtcagagactttgacacgggatagaatctccagattttccatagttgctacaccacgtggcatgcacactgtggagaatgattcctcggacttgacggcgtcttttgttgggcagtcgatgcaacctgcaagcagatgcttcagctgtggcagcaccgcatggaactcctgtacccttgttcctcggatgtcgaGTgtctccaagttctcaagctgacctatctgcttgggcagttgggtaacatctgtgtttcggagattcagatacttgagtgtacgaatcttacagatcatatcgaggtccttcttcttcaggcccttgcgaccttccagatccagcactgtcagcatcaacctcggagagcttgaaagcgacttgaggaactctacaatgttgtagttacaccgatggagctggatcccgttgcggatcgagaagaggagatccaagtcatcgagtggcagctggttgttgagcaataggtcctcgaccgtcggagactccttgttgatcgtgtcagcaaccaaaggatgcacagcgcagctctttaccttgcccgtgctacaaatcttatgatgaaccatgagattttgaacgttgattgtgtggaagcagtggtcggcttcgttctgttttaccaagccttgtgcaacccaccgtctcactaagcttgccctccggacgccggagactttgcctgcctcatgggtgaagacagtggaataccataagcagttcttgtagtcagtgggcagtgattggtagcagaaggcgatcatgaggtcatcccgttgctcctgtcccagcccaaggcttttatctagctgctccagctcttgctctgtgatgtcagggttgcagtagagagcatggaggaacAtgtttaagcattggacatccagaatgcacttgccaaggatctcgcgcacgactcctttcagccgcgaatcgtcgttgttcagcttgctgggaaggagcttctctgctttcttgaagtaaatatcaacaggggagtagtgtatatgcttgtccggagagcatttctcggccatggccgtgtcgttggtggagAacaccaccgtgctgccgtttgagcagccagacgaggccagcaactgctgtatctgaacccatatgttgtggtaatccaggtcggaaagaagcagcagtagcctcttgcctttgagagaatctgcaagTttctttctgacatcgccctcgtcagtgtactccaagaaactgctgttgcTGGtggtggtggtggtggtggtggttcgagcaggaaggatttggccaagcatgaccaacagtatctggaggagaatcggaggtcgctcgacggagacgcggagcacgcagtcgaactgctgctcgtcggaggaggaggaaatggactgcttgatgtcctcgcaaaccttgtcgacgacggcggaggcatctgctccgtcgtgcacggtgacggctagcacccttagcccgggtagacggacgtcgatgttgccgctgctttgcttcggtggatagagccaccggataatctcgccggcgacccttagccgccgtggaggtggcgtcggcggcggcggcgttgtgttgtcgctctggtcattgctttcctgctccagggaatcgaggcaccggataatctcgctggcgcagacggtggcggcgtcgccgtcgagtatgatgcgacggtactcactcctgctgctgtccgtcgtgcggccgctgctcctccggcggtggccggcggcggccaccacgacgccggcgccggggctgggctgctgtatcgccgccgccttcatgtacctcgcctggcgctcgctgatctcgcaggcgcgggccttgagctcccggatgcgggtgacgacgcggtgctgcgcgatcgcccacggcagccaggaggcgccgcggaggcggccgaggaggccatggccgttggacttcttctgctgcatgtacagctcgacgcagcttctggagtcgaaggcgagctccatcacctgcttcatccacgtccggaagtagtagtcgccgccggccctccggtccgccgccaccaggtggcggagcaggtcgttcatgctctccatctcgtccatgatgaactgcacgtcgtcgcgggcgccgcccagcagccgggcctcgttgcggatgagCCccagcaccatgctgacggcgcccagagcgacgtcagccat
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| CDS seq | atggctgacgtcgctctgggcgccgtcagcatggtgctggGGctcatccgcaacgaggcccggctgctgggcggcgcccgcgacgacgtgcagttcatcatggacgagatggagagcatgaacgacctgctccgccacctggtggcggcggaccggagggccggcggcgactactacttccggacgtggatgaagcaggtgatggagctcgccttcgactccagaagctgcgtcgagctgtacatgcagcagaagaagtccaacggccatggcctcctcggccgcctccgcggcgcctcctggctgccgtgggcgatcgcgcagcaccgcgtcgtcacccgcatccgggagctcaaggcccgcgcctgcgagatcagcgagcgccaggcgaggtacatgaaggcggcggcgatacagcagcccagccccggcgccggcgtcgtggtggccgccgccggccaccgccggaggagcagcggccgcacgacggacagcagcaggagtgagtaccgtcgcatcatactcgacggcgacgccgccaccgtctgcgccagcgagattatccggtgcctcgattccctggagcaggaaagcaatgaccagagcgacaacacaacgccgccgccgccgacgccacctccacggcggctaagggtcgccggcgagattatccggtggctctatccaccgaagcaaagcagcggcaacatcgacgtccgtctacccgggctaagggtgctagccgtcaccgtgcacgacggagcagatgcctccgccgtcgtcgacaaggtttgcgaggacatcaagcagtccatttcctcctcctccgacgagcagcagttcgactgcgtgctccgcgtctccgtcgagcgacctccgattctcctccagatactgttggtcatgcttggccaaatccttcctgctcgaaccaccaccaccaccaccaccaCCAgcaacagcagtttcttggagtacactgacgagggcgatgtcagaaagaaActtgcagattctctcaaaggcaagaggctactgctgcttctttccgacctggattaccacaacatatgggttcagatacagcagttgctggcctcgtctggctgctcaaacggcagcacggtggtgtTctccaccaacgacacggccatggccgagaaatgctctccggacaagcatatacactactcccctgttgatatttacttcaagaaagcagagaagctccttcccagcaagctgaacaacgacgattcgcggctgaaaggagtcgtgcgcgagatccttggcaagtgcattctggatgtccaatgcttaaacaTgttcctccatgctctctactgcaaccctgacatcacagagcaagagctggagcagctagataaaagccttgggctgggacaggagcaacgggatgacctcatgatcgccttctgctaccaatcactgcccactgactacaagaactgcttatggtattccactgtcttcacccatgaggcaggcaaagtctccggcgtccggagggcaagcttagtgagacggtgggttgcacaaggcttggtaaaacagaacgaagccgaccactgcttccacacaatcaacgttcaaaatctcatggttcatcataagatttgtagcacgggcaaggtaaagagctgcgctgtgcatcctttggttgctgacacgatcaacaaggagtctccgacggtcgaggacctattgctcaacaaccagctgccactcgatgacttggatctcctcttctcgatccgcaacgggatccagctccatcggtgtaactacaacattgtagagttcctcaagtcgctttcaagctctccgaggttgatgctgacagtgctggatctggaaggtcgcaagggcctgaagaagaaggacctcgatatgatctgtaagattcgtacactcaagtatctgaatctccgaaacacagatgttacccaactgcccaagcagataggtcagcttgagaacttggagacACtcgacatccgaggaacaagggtacaggagttccatgcggtgctgccacagctgaagcatctgcttgcaggttgcatcgactgcccaacaaaagacgccgtcaagtccgaggaatcattctccacagtgtgcatgccacgtggtgtagcaactatggaaaatctggagattctatcccgtgtcaaagtctctgacagtgccaaggagctggtcgacattggtgacaaactagggcagttgaagaagcttggtgttgttctatctggtgagaaagctaccttgaaagatttgttcattcaggttgataaactccataggaagctccaatcgttgtcaatccgaatggaaacttcaggtagctgggatgcgattgatgctattttactgagacccccaaggcttctagaaagcctacacatctgcaacatcataagcaggttgcctcccaggatcaaggagcttcatcaacttgccaagataactctacgtgacacttttctgaaagaggatgctctcaacatactcggcacactcagagggctccgctctctcagactccgctaccattcgttcgcagaaggtgctctcactttcagaagtggacagttcaataatctcactgatcttgaaatcagagataatgttcttatcagcatcacctttgctcctgggacagcccttaaactcaataagatgaatccctcgtcgccttcttcttcttcgtcgtcgtcgtcctcCgccgccgccgccgccaccttctggacttctggttcaatggtgctcgacgacggcgaggtacagtacggaagcacagcgtgtgttcttgctacccctcctgggacactactagccgttggatcaggtgcgtgcggttcagattga
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| Protein seq | MADVALGAVSMVLGLIRNEARLLGGARDDVQFIMDEMESMNDLLRHLVAADRRAGGDYYFRTWMKQVMELAFDSRSCVELYMQQKKSNGHGLLGRLRGASWLPWAIAQHRVVTRIRELKARACEISERQARYMKAAAIQQPSPGAGVVVAAAGHRRRSSGRTTDSSRSEYRRIILDGDAATVCASEIIRCLDSLEQESNDQSDNTTPPPPTPPPRRLRVAGEIIRWLYPPKQSSGNIDVRLPGLRVLAVTVHDGADASAVVDKVCEDIKQSISSSSDEQQFDCVLRVSVERPPILLQILLVMLGQILPARTTTTTTTTSNSSFLEYTDEGDVRKKLADSLKGKRLLLLLSDLDYHNIWVQIQQLLASSGCSNGSTVVFSTNDTAMAEKCSPDKHIHYSPVDIYFKKAEKLLPSKLNNDDSRLKGVVREILGKCILDVQCLNMFLHALYCNPDITEQELEQLDKSLGLGQEQRDDLMIAFCYQSLPTDYKNCLWYSTVFTHEAGKVSGVRRASLVRRWVAQGLVKQNEADHCFHTINVQNLMVHHKICSTGKVKSCAVHPLVADTINKESPTVEDLLLNNQLPLDDLDLLFSIRNGIQLHRCNYNIVEFLKSLSSSPRLMLTVLDLEGRKGLKKKDLDMICKIRTLKYLNLRNTDVTQLPKQIGQLENLETLDIRGTRVQEFHAVLPQLKHLLAGCIDCPTKDAVKSEESFSTVCMPRGVATMENLEILSRVKVSDSAKELVDIGDKLGQLKKLGVVLSGEKATLKDLFIQVDKLHRKLQSLSIRMETSGSWDAIDAILLRPPRLLESLHICNIISRLPPRIKELHQLAKITLRDTFLKEDALNILGTLRGLRSLRLRYHSFAEGALTFRSGQFNNLTDLEIRDNVLISITFAPGTALKLNKMNPSSPSSSSSSSSSAAAAATFWTSGSMVLDDGEVQYGSTACVLATPPGTLLAVGSGACGSD |
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| Function | Disease resistance protein Piks-2 [UniProtKB/Swiss-Prot:P0DO10] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0022590 | OsLima_11g0022590.01 | Chr11 | 28350629 | 28354905 | - | NAM | ||
| CDS seq | atggctgacgtcgctctgggcgccgtcagcatggtgctggGGctcatccgcaacgaggcccggctgctgggcggcgcccgcgacgacgtgcagttcatcatggacgagatggagagcatgaacgacctgctccgccacctggtggcggcggaccggagggccggcggcgactactacttccggacgtggatgaagcaggtgatggagctcgccttcgactccagaagctgcgtcgagctgtacatgcagcagaagaagtccaacggccatggcctcctcggccgcctccgcggcgcctcctggctgccgtgggcgatcgcgcagcaccgcgtcgtcacccgcatccgggagctcaaggcccgcgcctgcgagatcagcgagcgccaggcgaggtacatgaaggcggcggcgatacagcagcccagccccggcgccggcgtcgtggtggccgccgccggccaccgccggaggagcagcggccgcacgacggacagcagcaggagtgagtaccgtcgcatcatactcgacggcgacgccgccaccgtctgcgccagcgagattatccggtgcctcgattccctggagcaggaaagcaatgaccagagcgacaacacaacgccgccgccgccgacgccacctccacggcggctaagggtcgccggcgagattatccggtggctctatccaccgaagcaaagcagcggcaacatcgacgtccgtctacccgggctaagggtgctagccgtcaccgtgcacgacggagcagatgcctccgccgtcgtcgacaaggtttgcgaggacatcaagcagtccatttcctcctcctccgacgagcagcagttcgactgcgtgctccgcgtctccgtcgagcgacctccgattctcctccagatactgttggtcatgcttggccaaatccttcctgctcgaaccaccaccaccaccaccaccaCCAgcaacagcagtttcttggagtacactgacgagggcgatgtcagaaagaaActtgcagattctctcaaaggcaagaggctactgctgcttctttccgacctggattaccacaacatatgggttcagatacagcagttgctggcctcgtctggctgctcaaacggcagcacggtggtgtTctccaccaacgacacggccatggccgagaaatgctctccggacaagcatatacactactcccctgttgatatttacttcaagaaagcagagaagctccttcccagcaagctgaacaacgacgattcgcggctgaaaggagtcgtgcgcgagatccttggcaagtgcattctggatgtccaatgcttaaacaTgttcctccatgctctctactgcaaccctgacatcacagagcaagagctggagcagctagataaaagccttgggctgggacaggagcaacgggatgacctcatgatcgccttctgctaccaatcactgcccactgactacaagaactgcttatggtattccactgtcttcacccatgaggcaggcaaagtctccggcgtccggagggcaagcttagtgagacggtgggttgcacaaggcttggtaaaacagaacgaagccgaccactgcttccacacaatcaacgttcaaaatctcatggttcatcataagatttgtagcacgggcaaggtaaagagctgcgctgtgcatcctttggttgctgacacgatcaacaaggagtctccgacggtcgaggacctattgctcaacaaccagctgccactcgatgacttggatctcctcttctcgatccgcaacgggatccagctccatcggtgtaactacaacattgtagagttcctcaagtcgctttcaagctctccgaggttgatgctgacagtgctggatctggaaggtcgcaagggcctgaagaagaaggacctcgatatgatctgtaagattcgtacactcaagtatctgaatctccgaaacacagatgttacccaactgcccaagcagataggtcagcttgagaacttggagacACtcgacatccgaggaacaagggtacaggagttccatgcggtgctgccacagctgaagcatctgcttgcaggttgcatcgactgcccaacaaaagacgccgtcaagtccgaggaatcattctccacagtgtgcatgccacgtggtgtagcaactatggaaaatctggagattctatcccgtgtcaaagtctctgacagtgccaaggagctggtcgacattggtgacaaactagggcagttgaagaagcttggtgttgttctatctggtgagaaagctaccttgaaagatttgttcattcaggttgataaactccataggaagctccaatcgttgtcaatccgaatggaaacttcaggtagctgggatgcgattgatgctattttactgagacccccaaggcttctagaaagcctacacatctgcaacatcataagcaggttgcctcccaggatcaaggagcttcatcaacttgccaagataactctacgtgacacttttctgaaagaggatgctctcaacatactcggcacactcagagggctccgctctctcagactccgctaccattcgttcgcagaaggtgctctcactttcagaagtggacagttcaataatctcactgatcttgaaatcagagataatgttcttatcagcatcacctttgctcctgggacagcccttaaactcaataagatgaatccctcgtcgccttcttcttcttcgtcgtcgtcgtcctcCgccgccgccgccgccaccttctggacttctggttcaatggtgctcgacgacggcgaggtacagtacggaagcacagcgtgtgttcttgctacccctcctgggacactactagccgttggatcaggtgcgtgcggttcagattga
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| Protein seq | MADVALGAVSMVLGLIRNEARLLGGARDDVQFIMDEMESMNDLLRHLVAADRRAGGDYYFRTWMKQVMELAFDSRSCVELYMQQKKSNGHGLLGRLRGASWLPWAIAQHRVVTRIRELKARACEISERQARYMKAAAIQQPSPGAGVVVAAAGHRRRSSGRTTDSSRSEYRRIILDGDAATVCASEIIRCLDSLEQESNDQSDNTTPPPPTPPPRRLRVAGEIIRWLYPPKQSSGNIDVRLPGLRVLAVTVHDGADASAVVDKVCEDIKQSISSSSDEQQFDCVLRVSVERPPILLQILLVMLGQILPARTTTTTTTTSNSSFLEYTDEGDVRKKLADSLKGKRLLLLLSDLDYHNIWVQIQQLLASSGCSNGSTVVFSTNDTAMAEKCSPDKHIHYSPVDIYFKKAEKLLPSKLNNDDSRLKGVVREILGKCILDVQCLNMFLHALYCNPDITEQELEQLDKSLGLGQEQRDDLMIAFCYQSLPTDYKNCLWYSTVFTHEAGKVSGVRRASLVRRWVAQGLVKQNEADHCFHTINVQNLMVHHKICSTGKVKSCAVHPLVADTINKESPTVEDLLLNNQLPLDDLDLLFSIRNGIQLHRCNYNIVEFLKSLSSSPRLMLTVLDLEGRKGLKKKDLDMICKIRTLKYLNLRNTDVTQLPKQIGQLENLETLDIRGTRVQEFHAVLPQLKHLLAGCIDCPTKDAVKSEESFSTVCMPRGVATMENLEILSRVKVSDSAKELVDIGDKLGQLKKLGVVLSGEKATLKDLFIQVDKLHRKLQSLSIRMETSGSWDAIDAILLRPPRLLESLHICNIISRLPPRIKELHQLAKITLRDTFLKEDALNILGTLRGLRSLRLRYHSFAEGALTFRSGQFNNLTDLEIRDNVLISITFAPGTALKLNKMNPSSPSSSSSSSSSAAAAATFWTSGSMVLDDGEVQYGSTACVLATPPGTLLAVGSGACGSD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.157843 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0579100 | SBH | 0.351286 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g43480 | SBH | 0.0 | 0.0 | 0.048810 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0579100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0022450 | RBH | 0.065690 | 4.527874 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0022340 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0022220 | SBH | 0.0 | 0.728849 | 0.843563 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0021800 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0022160 | SBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0390600 | SBH | 0.0441845 | 0.2657115 | 0.24881 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0023090 | RBH | 0.0 | 0.228880 | 0.140972 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0413100 | SBH | 0.6968275 | 0.267859 | 1.724804 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0022640 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0022230 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0022460 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0021910 | RBH | 0.0 | 0.0 | 0.079602 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0021970 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G022310 | SBH | 0.0 | 2.682502 | 2.665690 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0022790 | SBH | 0.0 | 1.142824 | 1.134597 |
