Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0022580 | OGI:11074170 | 12/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:28333952-28337084 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggacggttttggcctgagctccacccactccgccgtgaaatcgctcgtcggccggctgaccgatgtcctctccgaccaagtgcagctgctaggcgggctgaggcgcgaggtgcagttcatccgggacgagatggagagcatgaacggcttcctcctcaaccacgcgcgcaaggggcgcatggaccaccagctccaggcgtggatgaaccaggtcaaggacctcgccaaccattcccagtactgcgtcgaccagtatttgcggtgcctcggcaccaccagccaccgctcgccgggtggcctctggggctccgtgcgccgtctcccccggttcgtcagcacgttgccggcgcgctaccggttggctatccaaatccaggacatcaagatccgggtagtggaggttagccagaggcagcagaggtatcctctccatggcacggctaccgagcaggagccgcagtctggcatggccagcgatcatagccagcaagctttccttaccggtgacagtgaagccgatcagcaggagcatcttcggaggcgtaTCttggccgaagacgactctggcctgttcaaggaggctgctgatgagctcaccagctggctgacagtggaaggagatggcagatcagatctcagaatcatccccattgtcggctcccgtggcatgggcaaaaccactcttgctgagcaagtgtacaaaggttattcctcaaggttggcagaacacaaggcatggatctcggttggctccaaccaatctccccaacaagtactccgggacatactcgcgcagattgtagggcttcatgccaataatctgcaggacatgggaacatggggaaacagccaaatcgcactgatgattcaggagcagctggaaggtaaaaggttccttattgttcttgatgatgtctgctccgagtcgctctggaaagatatcgaagcttctctccactgcggtaattctgctcccagtgctatacttgtcaccacaagcttgcctgaagtggcacagtcattttgtccttacagaatatatgatctaaggtatatccaggaggagcataaccgctccttagttgaTttcttcctcgtgagagcagctaacttgataagtgacaatggtcatggcaaagctggtctcaaggaggaggttcttcgcagcattttagtaaaatgttccccctgtatctttagcatgaagatgcttctccgattcctttatgcgaatcctaacaagaccctacaggaactgcatgacttcagcaacagcctgtgcttctgcagccctctgcatctgtcttcatggctgtccaatgccgagaaaatgctcacattctgctacaacgccttgccttgtgattacaggagctgcttgctgtatcttaccattttccccaatgaccacaatatcaggagaacgagcctgctcagaaaatggatcgcggaaggcctaatagctgaaagagatggactgagtgcatttgatgttgccaaccgatgttttgatgctcttctcgctcaaagatttgttcttcctggtgatgttggaaattcaggcaaggtaaacagctgcagagtgcacaatctagtccgtgacttcattgcctgggtcatcagagatgacaactttgtgtacacaaagctaccagtcgacttggctcaccgtctccccatccacaacggagaaagactgcagcaggtctcgcggatcaaacttcgtgcttctcatttcgacgattgttggagcatgacaaggggttgcttcacaacaaagtcagtggatcccttggctggcatatccatgttacttagatcaattcaggaatctgctcaactaggattacgtctcaatgtacttgatctagaaggctgcaaaggattggagaagtatcacctgaacaacatttgcaagatatttcaactcaagtatttgagcctcaggaatacagatgtttcccacttgcccaagaagatcgacaagctacagtacctagagacacttgacatccggcaaacccagataaaggcattcccaggaaagcatgttatccttcctgggctgaagcacctacttgctggttgcaccaattgtcctagcaagaaaaacaatctcaaggaaaaggaatcttgctcgttttccactgtgctcatgcctcgaaaaattgtgaggatgggaaagttggagatactatgctatgctgaggtttccagtggcctcactgggctaatgggaatttgtcagctacgacaactcagaaaactgggagtactcttccaaggtaatgcagcttgtaatctggattacttgttccgacaaatcgacatgttggatagaagcctgcactctttgtcgatccggatggaacgactgaagttagccaaagacgatgcccgcaaaagggatgacatggtacccgcatcatttcccttttcacctccaaagtttgttcagaagctaaacatcagtggcatcagaagtgcattgcttggttggattggtgacctccaccaactttccaagataactctgcatgagacttcactcacggaacatgttctcggtatcctaggacagcttggcagcctgcggtgcctcaagcttcagtgcaattcaaccatgggtagcagTctatcattcaggagtggagcatttcggaacctcgtagctcttgttgtccaggacaataacctccttgacattatcttcgattacggagcagctccaaggcttgagagagtgatattgtctatcgctgccattgactctctgtctggagtacagcaccttcagcagctgaaagagctcgagctccatggaagtgcaagaaacataggcgaggtcgaacaggccatagcaggacaccataataatccagttttcatacacgagcaatggaatgatcttcactgaagcttccgaaattctgaatgtctggtgcttgcatctgtgctctacaatgaagatagtaataagtggacgcaaagcaaacctcttttttcttgatgcatccacgttaaattttacttgtgttggattttcagtttgttagatttatatgtatcctccacagttgccactattaagcttgttgcaactatatcttccggaagcatttctattgtac
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| CDS seq | atggacggttttggcctgagctccacccactccgccgtgaaatcgctcgtcggccggctgaccgatgtcctctccgaccaagtgcagctgctaggcgggctgaggcgcgaggtgcagttcatccgggacgagatggagagcatgaacggcttcctcctcaaccacgcgcgcaaggggcgcatggaccaccagctccaggcgtggatgaaccaggtcaaggacctcgccaaccattcccagtactgcgtcgaccagtatttgcggtgcctcggcaccaccagccaccgctcgccgggtggcctctggggctccgtgcgccgtctcccccggttcgtcagcacgttgccggcgcgctaccggttggctatccaaatccaggacatcaagatccgggtagtggaggttagccagaggcagcagaggtatcctctccatggcacggctaccgagcaggagccgcagtctggcatggccagcgatcatagccagcaagctttccttaccggtgacagtgaagccgatcagcaggagcatcttcggaggcgtaTCttggccgaagacgactctggcctgttcaaggaggctgctgatgagctcaccagctggctgacagtggaaggagatggcagatcagatctcagaatcatccccattgtcggctcccgtggcatgggcaaaaccactcttgctgagcaagtgtacaaaggttattcctcaaggttggcagaacacaaggcatggatctcggttggctccaaccaatctccccaacaagtactccgggacatactcgcgcagattgtagggcttcatgccaataatctgcaggacatgggaacatggggaaacagccaaatcgcactgatgattcaggagcagctggaaggtaaaaggttccttattgttcttgatgatgtctgctccgagtcgctctggaaagatatcgaagcttctctccactgcggtaattctgctcccagtgctatacttgtcaccacaagcttgcctgaagtggcacagtcattttgtccttacagaatatatgatctaaggtatatccaggaggagcataaccgctccttagttgaTttcttcctcgtgagagcagctaacttgataagtgacaatggtcatggcaaagctggtctcaaggaggaggttcttcgcagcattttagtaaaatgttccccctgtatctttagcatgaagatgcttctccgattcctttatgcgaatcctaacaagaccctacaggaactgcatgacttcagcaacagcctgtgcttctgcagccctctgcatctgtcttcatggctgtccaatgccgagaaaatgctcacattctgctacaacgccttgccttgtgattacaggagctgcttgctgtatcttaccattttccccaatgaccacaatatcaggagaacgagcctgctcagaaaatggatcgcggaaggcctaatagctgaaagagatggactgagtgcatttgatgttgccaaccgatgttttgatgctcttctcgctcaaagatttgttcttcctggtgatgttggaaattcaggcaaggtaaacagctgcagagtgcacaatctagtccgtgacttcattgcctgggtcatcagagatgacaactttgtgtacacaaagctaccagtcgacttggctcaccgtctccccatccacaacggagaaagactgcagcaggtctcgcggatcaaacttcgtgcttctcatttcgacgattgttggagcatgacaaggggttgcttcacaacaaagtcagtggatcccttggctggcatatccatgttacttagatcaattcaggaatctgctcaactaggattacgtctcaatgtacttgatctagaaggctgcaaaggattggagaagtatcacctgaacaacatttgcaagatatttcaactcaagtatttgagcctcaggaatacagatgtttcccacttgcccaagaagatcgacaagctacagtacctagagacacttgacatccggcaaacccagataaaggcattcccaggaaagcatgttatccttcctgggctgaagcacctacttgctggttgcaccaattgtcctagcaagaaaaacaatctcaaggaaaaggaatcttgctcgttttccactgtgctcatgcctcgaaaaattgtgaggatgggaaagttggagatactatgctatgctgaggtttccagtggcctcactgggctaatgggaatttgtcagctacgacaactcagaaaactgggagtactcttccaaggtaatgcagcttgtaatctggattacttgttccgacaaatcgacatgttggatagaagcctgcactctttgtcgatccggatggaacgactgaagttagccaaagacgatgcccgcaaaagggatgacatggtacccgcatcatttcccttttcacctccaaagtttgttcagaagctaaacatcagtggcatcagaagtgcattgcttggttggattggtgacctccaccaactttccaagataactctgcatgagacttcactcacggaacatgttctcggtatcctaggacagcttggcagcctgcggtgcctcaagcttcagtgcaattcaaccatgggtagcagTctatcattcaggagtggagcatttcggaacctcgtagctcttgttgtccaggacaataacctccttgacattatcttcgattacggagcagctccaaggcttgagagagtgatattgtctatcgctgccattgactctctgtctggagtacagcaccttcagcagctgaaagagctcgagctccatggaagtgcaagaaacataggcgaggtcgaacaggccatagcaggacaccataataatccagttttcatacacgagcaatggaatgatcttcactga
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| Protein seq | MDGFGLSSTHSAVKSLVGRLTDVLSDQVQLLGGLRREVQFIRDEMESMNGFLLNHARKGRMDHQLQAWMNQVKDLANHSQYCVDQYLRCLGTTSHRSPGGLWGSVRRLPRFVSTLPARYRLAIQIQDIKIRVVEVSQRQQRYPLHGTATEQEPQSGMASDHSQQAFLTGDSEADQQEHLRRRILAEDDSGLFKEAADELTSWLTVEGDGRSDLRIIPIVGSRGMGKTTLAEQVYKGYSSRLAEHKAWISVGSNQSPQQVLRDILAQIVGLHANNLQDMGTWGNSQIALMIQEQLEGKRFLIVLDDVCSESLWKDIEASLHCGNSAPSAILVTTSLPEVAQSFCPYRIYDLRYIQEEHNRSLVDFFLVRAANLISDNGHGKAGLKEEVLRSILVKCSPCIFSMKMLLRFLYANPNKTLQELHDFSNSLCFCSPLHLSSWLSNAEKMLTFCYNALPCDYRSCLLYLTIFPNDHNIRRTSLLRKWIAEGLIAERDGLSAFDVANRCFDALLAQRFVLPGDVGNSGKVNSCRVHNLVRDFIAWVIRDDNFVYTKLPVDLAHRLPIHNGERLQQVSRIKLRASHFDDCWSMTRGCFTTKSVDPLAGISMLLRSIQESAQLGLRLNVLDLEGCKGLEKYHLNNICKIFQLKYLSLRNTDVSHLPKKIDKLQYLETLDIRQTQIKAFPGKHVILPGLKHLLAGCTNCPSKKNNLKEKESCSFSTVLMPRKIVRMGKLEILCYAEVSSGLTGLMGICQLRQLRKLGVLFQGNAACNLDYLFRQIDMLDRSLHSLSIRMERLKLAKDDARKRDDMVPASFPFSPPKFVQKLNISGIRSALLGWIGDLHQLSKITLHETSLTEHVLGILGQLGSLRCLKLQCNSTMGSSLSFRSGAFRNLVALVVQDNNLLDIIFDYGAAPRLERVILSIAAIDSLSGVQHLQQLKELELHGSARNIGEVEQAIAGHHNNPVFIHEQWNDLH |
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| Function | Disease resistance protein Piks-2 [UniProtKB/Swiss-Prot:P0DO10] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0022580 | OsLima_11g0022580.01 | Chr11 | 28333952 | 28337084 | + | NAM | ||
| CDS seq | atggacggttttggcctgagctccacccactccgccgtgaaatcgctcgtcggccggctgaccgatgtcctctccgaccaagtgcagctgctaggcgggctgaggcgcgaggtgcagttcatccgggacgagatggagagcatgaacggcttcctcctcaaccacgcgcgcaaggggcgcatggaccaccagctccaggcgtggatgaaccaggtcaaggacctcgccaaccattcccagtactgcgtcgaccagtatttgcggtgcctcggcaccaccagccaccgctcgccgggtggcctctggggctccgtgcgccgtctcccccggttcgtcagcacgttgccggcgcgctaccggttggctatccaaatccaggacatcaagatccgggtagtggaggttagccagaggcagcagaggtatcctctccatggcacggctaccgagcaggagccgcagtctggcatggccagcgatcatagccagcaagctttccttaccggtgacagtgaagccgatcagcaggagcatcttcggaggcgtaTCttggccgaagacgactctggcctgttcaaggaggctgctgatgagctcaccagctggctgacagtggaaggagatggcagatcagatctcagaatcatccccattgtcggctcccgtggcatgggcaaaaccactcttgctgagcaagtgtacaaaggttattcctcaaggttggcagaacacaaggcatggatctcggttggctccaaccaatctccccaacaagtactccgggacatactcgcgcagattgtagggcttcatgccaataatctgcaggacatgggaacatggggaaacagccaaatcgcactgatgattcaggagcagctggaaggtaaaaggttccttattgttcttgatgatgtctgctccgagtcgctctggaaagatatcgaagcttctctccactgcggtaattctgctcccagtgctatacttgtcaccacaagcttgcctgaagtggcacagtcattttgtccttacagaatatatgatctaaggtatatccaggaggagcataaccgctccttagttgaTttcttcctcgtgagagcagctaacttgataagtgacaatggtcatggcaaagctggtctcaaggaggaggttcttcgcagcattttagtaaaatgttccccctgtatctttagcatgaagatgcttctccgattcctttatgcgaatcctaacaagaccctacaggaactgcatgacttcagcaacagcctgtgcttctgcagccctctgcatctgtcttcatggctgtccaatgccgagaaaatgctcacattctgctacaacgccttgccttgtgattacaggagctgcttgctgtatcttaccattttccccaatgaccacaatatcaggagaacgagcctgctcagaaaatggatcgcggaaggcctaatagctgaaagagatggactgagtgcatttgatgttgccaaccgatgttttgatgctcttctcgctcaaagatttgttcttcctggtgatgttggaaattcaggcaaggtaaacagctgcagagtgcacaatctagtccgtgacttcattgcctgggtcatcagagatgacaactttgtgtacacaaagctaccagtcgacttggctcaccgtctccccatccacaacggagaaagactgcagcaggtctcgcggatcaaacttcgtgcttctcatttcgacgattgttggagcatgacaaggggttgcttcacaacaaagtcagtggatcccttggctggcatatccatgttacttagatcaattcaggaatctgctcaactaggattacgtctcaatgtacttgatctagaaggctgcaaaggattggagaagtatcacctgaacaacatttgcaagatatttcaactcaagtatttgagcctcaggaatacagatgtttcccacttgcccaagaagatcgacaagctacagtacctagagacacttgacatccggcaaacccagataaaggcattcccaggaaagcatgttatccttcctgggctgaagcacctacttgctggttgcaccaattgtcctagcaagaaaaacaatctcaaggaaaaggaatcttgctcgttttccactgtgctcatgcctcgaaaaattgtgaggatgggaaagttggagatactatgctatgctgaggtttccagtggcctcactgggctaatgggaatttgtcagctacgacaactcagaaaactgggagtactcttccaaggtaatgcagcttgtaatctggattacttgttccgacaaatcgacatgttggatagaagcctgcactctttgtcgatccggatggaacgactgaagttagccaaagacgatgcccgcaaaagggatgacatggtacccgcatcatttcccttttcacctccaaagtttgttcagaagctaaacatcagtggcatcagaagtgcattgcttggttggattggtgacctccaccaactttccaagataactctgcatgagacttcactcacggaacatgttctcggtatcctaggacagcttggcagcctgcggtgcctcaagcttcagtgcaattcaaccatgggtagcagTctatcattcaggagtggagcatttcggaacctcgtagctcttgttgtccaggacaataacctccttgacattatcttcgattacggagcagctccaaggcttgagagagtgatattgtctatcgctgccattgactctctgtctggagtacagcaccttcagcagctgaaagagctcgagctccatggaagtgcaagaaacataggcgaggtcgaacaggccatagcaggacaccataataatccagttttcatacacgagcaatggaatgatcttcactga
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| Protein seq | MDGFGLSSTHSAVKSLVGRLTDVLSDQVQLLGGLRREVQFIRDEMESMNGFLLNHARKGRMDHQLQAWMNQVKDLANHSQYCVDQYLRCLGTTSHRSPGGLWGSVRRLPRFVSTLPARYRLAIQIQDIKIRVVEVSQRQQRYPLHGTATEQEPQSGMASDHSQQAFLTGDSEADQQEHLRRRILAEDDSGLFKEAADELTSWLTVEGDGRSDLRIIPIVGSRGMGKTTLAEQVYKGYSSRLAEHKAWISVGSNQSPQQVLRDILAQIVGLHANNLQDMGTWGNSQIALMIQEQLEGKRFLIVLDDVCSESLWKDIEASLHCGNSAPSAILVTTSLPEVAQSFCPYRIYDLRYIQEEHNRSLVDFFLVRAANLISDNGHGKAGLKEEVLRSILVKCSPCIFSMKMLLRFLYANPNKTLQELHDFSNSLCFCSPLHLSSWLSNAEKMLTFCYNALPCDYRSCLLYLTIFPNDHNIRRTSLLRKWIAEGLIAERDGLSAFDVANRCFDALLAQRFVLPGDVGNSGKVNSCRVHNLVRDFIAWVIRDDNFVYTKLPVDLAHRLPIHNGERLQQVSRIKLRASHFDDCWSMTRGCFTTKSVDPLAGISMLLRSIQESAQLGLRLNVLDLEGCKGLEKYHLNNICKIFQLKYLSLRNTDVSHLPKKIDKLQYLETLDIRQTQIKAFPGKHVILPGLKHLLAGCTNCPSKKNNLKEKESCSFSTVLMPRKIVRMGKLEILCYAEVSSGLTGLMGICQLRQLRKLGVLFQGNAACNLDYLFRQIDMLDRSLHSLSIRMERLKLAKDDARKRDDMVPASFPFSPPKFVQKLNISGIRSALLGWIGDLHQLSKITLHETSLTEHVLGILGQLGSLRCLKLQCNSTMGSSLSFRSGAFRNLVALVVQDNNLLDIIFDYGAAPRLERVILSIAAIDSLSGVQHLQQLKELELHGSARNIGEVEQAIAGHHNNPVFIHEQWNDLH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.038784 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0655300 | RBH | 0.0 | 0.0 | 0.774995 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g43420 | RBH | 0.0 | 0.0 | 0.183443 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0655300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0022440 | RBH | 0.0 | 1.864795 | 0.721100 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0022510 | RBH | 0.0 | 0.357633 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0022190 | RBH | 0.0 | 3.108563 | 0.934176 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0021780 | RBH | 0.000000 | 0.053727 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0022110 | RBH | 0.0 | 0.0 | 1.203313 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0389300 | SBH | 0.890511 | 4.566477 | 2.743759 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0023070 | RBH | 0.000000 | 0.000000 | 0.052397 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0412900 | RBH | 0.0047 | 0.3506275 | 0.140692 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0022610 | SBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0022720 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0022440 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0021900 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0021950 | RBH | 0.0 | 0.950097 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G022300 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0022770 | RBH | 0.0 | 0.0 | 0.0 |
