Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0022610 | OGI:11074470 | 7/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:28368396-28371387 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctaatctgcataaatccaattgtcataaattatgcatataagttttttttgttctgttagcactgaatttggctaacctccaattgtctcagacgttttaaaattttgcactgaattttgaacagatacataaattgtgccgtaacattgaccgtttgaaacaggaaactaattccatgcactatgttcatatAaaatgtgatgcaatctgtaagtacctcatctgaaaagaagttacttgaagaagcttctcctttctcctttttattcagtgtggcttgatttttctgaaatgtggctactcggctgtgggctttggattttttcctgtgccctatcacggggccaactgctagcccaggtaaaaaatcgggccaaaaactggctcaaaacaaaacgggtctagagagacagatccgacccacgaggcagatcgctgggacaggggaaaaaaaatcactcgtgcactcgctcgtGggatcacgacgctcgcggggggaccctgatagattgctcatcggacggtcagcaattctagtgcttttacaaattttatcaccctggtgacacatagacagtcccttaaatagttgggggtcgagatatccaatattacggttaatgatatgaatcagattcggattcggccactagttaagggaggagtagcttgtgtactcggtctagcccgcacaagcctcattgaatggtctgaggcccaaatgaggtcggacaatttaggagcacttttaccatcctaatagttaacaatttagtactgctggcattatgccagattgatatgtccgagcgaaagtttcagtaggagtactataaaagatataacaaatccattaaccgaacagtacttgagaattaaagctacaaAACcatcctcacatggttcacaaaaacaataacactcaggcagtgtttggcaaatgtctaagggaaatgatttcccacccctttttaaatcttaaccattcattctccctcatccatttaatcctaacccttcattcatttcctaatccaaatcccacccctcatttcccattatccaaacacaccctcaaataatatgatccatgacgccaatacagtgaaggaaatgtatcagaggaagaagagttccctcacttgagcatctttattccatataagagatacctagataagcttgcagaactgctaagatcctttaatgaccttcccgttaccaagcactggtttttttttgtcaactcttttttttttcttgaaaggaattaTttattaccttacagtttgaactgaattttttgccataccttattcctgaatggtttttttttttggacggtattctttctccaccttttcgatttaaagctttatgtaacatcttctcctttgatccatttcccccgtcttgaaaagaacataactcaatactatctttttgcatgatgccaatatcttgagagacaccattgagctcaaactctctcaggctctgaagatcttcaagcccttcgggggactccatacatttgcaagaccaaaccaacttctcaagctttggagttgctccatactggaaaattaattttctgatctccttatcttcgatgtcaagaatgatgagattcatgaatgcaccattcgtgaaggtgagaacagacccctcaaatgaaacgtaccggagcctgagatagcataagcagccaaggtttccaagaataacaaaatcattatcactcaggcaagtttcacggagagagagcttggaaagttggccaagttttccaatccagcgtgtcagtagagctccagtaccactaatgctcaagctttggagaaactttggaggtgagagtaaagagagcatcgggtcatccgcatgatcatcattggatggcccctcaatccaaattgacaatgaccgaaggcatttatccattttttctatttgattgaataaatacttcatattagatctctttccataaagaattactccaagcttcttcaactttagattgcggatatgcagtaactcttcagcgccattagaaactttgacatgggataacacttccatgtttgtcatcctcccgatttcacgaggattctgcactgtttccaacgactcattggatctactagtatttccacttgtatatttgatgatgcaaccagcatagagacacttcagcagtggaagcattaggtattttgtgtcagactcacgcacctttgtcttccgtatgtcgagtgtctctaactgctggagcttatgaatatgtttcggcaagcagggaatgtctgtgtccttgagacccaaatatctgaggtgagataccttcttgcaaatgatcttgagatgcttcttcttcaagcctctgcaaccttctagatctagcacattcagcagatgcagaggatatggcacagaccgctttgttggaacaagcaactccatgatgccatatgaactggtaagatccgtcttcttttcttcaatttctttctgaatggaaaggcgctgagccatgtcaggtggcagttctgggtcgacagaataatcatatgttgcaagccagttaatgaggaagtctccaaccaattcatgtactctatagaagctcttggattttcttgtagttggcctgacttcttgttcaggaagtataaatctttgagccacaagtgcatcgaagcagtggctagcagtatccagtgcacttggaccctctcgtctactgattagaccttcagcaacccatcgtctcactatgcttgtcctcttgatcttgtaaccttgaggaaaaacagataggtagagcaggcagctcctgtaatgggctgggaaattattgaagcagaatagcatcattttctcggtattggtcgctggtgaagaagagtgcagcttgttgcaaatgtcctgcaactctcttgtggtcttgttaggattaaggtatagaaaggcaaggaacatcttcat
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| CDS seq | atgaagatgttccttgcctttctataccttaatcctaacaagaccacaagagagttgcaggacatttgcaacaagctgcactcttcttcaccagcgaccaataccgagaaaatgatgctattctgcttcaataatttcccagcccattacaggagctgcctgctctacctatctgtttttcctcaaggttacaagatcaagaggacaagcatagtgagacgatgggttgctgaaggtctaatcagtagacgagagggtccaagtgcactggatactgctagccactgcttcgatgcacttgtggctcaaagatttatacttcctgaacaagaagtcaggccaactacaagaaaatccaagagcttctatagagtacatgaattggttggagacttcctcattaactggcttgcaacatatgattattctgtcgacccagaactgccacctgacatggctcagcgcctttccattcagaaagaaattgaagaaaagaagacggatcttaccagttcatatggcatcatggagttgcttgttccaacaaagcggtctgtgccatatcctctgcatctgctgaatgtgctagatctagaaggttgcagaggcttgaagaagaagcatctcaagatcatttgcaagaaggtatctcacctcagatatttgggtctcaaggacacagacattccctgcttgccgaaacatattcataagctccagcagttagagacactcgacatacggaagacaaaggtgcgtgagtctgacacaaaatacctaatgcttccactgctgaagtgtctctatgctggttgcatcatcaaatatacaagtggaaatactagtagatccaatgagtcgttggaaacagtgcagaatcctcgtgaaatcgggaggatgacaaacatggaagtgttatcccatgtcaaagtttctaatggcgctgaagagttactgcatatccgcaatctaaagttgaagaagcttggagtaattctttatggaaagagatctaatatgaagtatttattcaatcaaatagaaaaaatggataaatgccttcggtcattgtcaatttggattgaggggccatccaatgatgatcatgcggatgacccgatgctctctttactctcacctccaaagtttctccaaagcttgagcattagtggtactggagctctactgacacgctggattggaaaacttggccaactttccaagctctctctccgtgaaacttgcctgagtgataatgattttgttattcttggaaaccttggctgcttatgctatctcaggctccggtacgtttcatttgaggggtctgttctcaccttcacgaatggtgcattcatgaatctcatcattcttgacatcgaagataaggagatcagaaaattaattttccagtatggagcaactccaaagcttgagaagttggtttggtcttgcaaatgtatggagtcccccgaagggcttgaagatcttcagagcctgagagagtttgagctcaatggtgtctctcaagatattggcatcatgcaaaaagatagtattgagttatgttcttttcaagacgggggaaatggatcaaaggagaagatgttacataaagctttaaatcgaaaagattag
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| Protein seq | MKMFLAFLYLNPNKTTRELQDICNKLHSSSPATNTEKMMLFCFNNFPAHYRSCLLYLSVFPQGYKIKRTSIVRRWVAEGLISRREGPSALDTASHCFDALVAQRFILPEQEVRPTTRKSKSFYRVHELVGDFLINWLATYDYSVDPELPPDMAQRLSIQKEIEEKKTDLTSSYGIMELLVPTKRSVPYPLHLLNVLDLEGCRGLKKKHLKIICKKVSHLRYLGLKDTDIPCLPKHIHKLQQLETLDIRKTKVRESDTKYLMLPLLKCLYAGCIIKYTSGNTSRSNESLETVQNPREIGRMTNMEVLSHVKVSNGAEELLHIRNLKLKKLGVILYGKRSNMKYLFNQIEKMDKCLRSLSIWIEGPSNDDHADDPMLSLLSPPKFLQSLSISGTGALLTRWIGKLGQLSKLSLRETCLSDNDFVILGNLGCLCYLRLRYVSFEGSVLTFTNGAFMNLIILDIEDKEIRKLIFQYGATPKLEKLVWSCKCMESPEGLEDLQSLREFELNGVSQDIGIMQKDSIELCSFQDGGNGSKEKMLHKALNRKD |
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| Function | Disease resistance protein PIK6-NP [UniProtKB/Swiss-Prot:Q2QZF1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0022610 | OsLima_11g0022610.01 | Chr11 | 28368396 | 28371387 | - | NAM | ||
| CDS seq | atgaagatgttccttgcctttctataccttaatcctaacaagaccacaagagagttgcaggacatttgcaacaagctgcactcttcttcaccagcgaccaataccgagaaaatgatgctattctgcttcaataatttcccagcccattacaggagctgcctgctctacctatctgtttttcctcaaggttacaagatcaagaggacaagcatagtgagacgatgggttgctgaaggtctaatcagtagacgagagggtccaagtgcactggatactgctagccactgcttcgatgcacttgtggctcaaagatttatacttcctgaacaagaagtcaggccaactacaagaaaatccaagagcttctatagagtacatgaattggttggagacttcctcattaactggcttgcaacatatgattattctgtcgacccagaactgccacctgacatggctcagcgcctttccattcagaaagaaattgaagaaaagaagacggatcttaccagttcatatggcatcatggagttgcttgttccaacaaagcggtctgtgccatatcctctgcatctgctgaatgtgctagatctagaaggttgcagaggcttgaagaagaagcatctcaagatcatttgcaagaaggtatctcacctcagatatttgggtctcaaggacacagacattccctgcttgccgaaacatattcataagctccagcagttagagacactcgacatacggaagacaaaggtgcgtgagtctgacacaaaatacctaatgcttccactgctgaagtgtctctatgctggttgcatcatcaaatatacaagtggaaatactagtagatccaatgagtcgttggaaacagtgcagaatcctcgtgaaatcgggaggatgacaaacatggaagtgttatcccatgtcaaagtttctaatggcgctgaagagttactgcatatccgcaatctaaagttgaagaagcttggagtaattctttatggaaagagatctaatatgaagtatttattcaatcaaatagaaaaaatggataaatgccttcggtcattgtcaatttggattgaggggccatccaatgatgatcatgcggatgacccgatgctctctttactctcacctccaaagtttctccaaagcttgagcattagtggtactggagctctactgacacgctggattggaaaacttggccaactttccaagctctctctccgtgaaacttgcctgagtgataatgattttgttattcttggaaaccttggctgcttatgctatctcaggctccggtacgtttcatttgaggggtctgttctcaccttcacgaatggtgcattcatgaatctcatcattcttgacatcgaagataaggagatcagaaaattaattttccagtatggagcaactccaaagcttgagaagttggtttggtcttgcaaatgtatggagtcccccgaagggcttgaagatcttcagagcctgagagagtttgagctcaatggtgtctctcaagatattggcatcatgcaaaaagatagtattgagttatgttcttttcaagacgggggaaatggatcaaaggagaagatgttacataaagctttaaatcgaaaagattag
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| Protein seq | MKMFLAFLYLNPNKTTRELQDICNKLHSSSPATNTEKMMLFCFNNFPAHYRSCLLYLSVFPQGYKIKRTSIVRRWVAEGLISRREGPSALDTASHCFDALVAQRFILPEQEVRPTTRKSKSFYRVHELVGDFLINWLATYDYSVDPELPPDMAQRLSIQKEIEEKKTDLTSSYGIMELLVPTKRSVPYPLHLLNVLDLEGCRGLKKKHLKIICKKVSHLRYLGLKDTDIPCLPKHIHKLQQLETLDIRKTKVRESDTKYLMLPLLKCLYAGCIIKYTSGNTSRSNESLETVQNPREIGRMTNMEVLSHVKVSNGAEELLHIRNLKLKKLGVILYGKRSNMKYLFNQIEKMDKCLRSLSIWIEGPSNDDHADDPMLSLLSPPKFLQSLSISGTGALLTRWIGKLGQLSKLSLRETCLSDNDFVILGNLGCLCYLRLRYVSFEGSVLTFTNGAFMNLIILDIEDKEIRKLIFQYGATPKLEKLVWSCKCMESPEGLEDLQSLREFELNGVSQDIGIMQKDSIELCSFQDGGNGSKEKMLHKALNRKD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0655300 | SBH | 0.0 | 0.0 | 0.774995 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g43420 | SBH | 0.0 | 0.0 | 0.183443 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0655300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0022470 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0022510 | SBH | 0.0 | 0.357633 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0022190 | SBH | 0.0 | 3.108563 | 0.934176 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0021660 | SBH | 0.019316 | 0.010651 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0022110 | SBH | 0.0 | 0.0 | 1.203313 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0390300 | RBH | 0 | 0 | 0.0207175 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0022950 | SBH | 0.000000 | 0.000000 | 0.289307 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0412900 | SBH | 0.0047 | 0.3506275 | 0.140692 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0022640 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0020470 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0022440 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0021930 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0021950 | SBH | 0.0 | 0.950097 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G022300 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0022770 | SBH | 0.0 | 0.0 | 0.0 |
