Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0022170 | OGI:11073050 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:27837796-27852365 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggctgagggtgcggtgggcgccgtgacgacgctgctgggcctcatccgcgatgaggcgcagttgctaggccgcgtgaagaaggacgtgcggttcatcaaggaggagatggagagcatgaggagcttcctggctcacctgaccgagacggagccacccggtggcgagcacgacgagcaggtccggacgtggatgaagcaggtccgggagctcgcgcaggactgcagcaactgcatcgacacctacctgcagcgcggcgacccagcggtccgccacgccagctggccgggccgcggcgccggcatcctccagcgctacatctgctgggctccttggatggtcgagaagttgctcgcccagcactacgcggccatccggctgcgcgagctcatggatcgtgcccacgacgtcggccagcgtcgattgaggtacggcgtggaggtccccggcaagctgtcatccaaggctgcaggaggggcagcgtcgtcatcggtgcggtccgaagaagcttctccatcaaccaccataggtgcacaagcaccagacaaggaagatgaagacgaggaggaggagcagcagcagcaagaccaagagcacgacgcggcaacgtcgacctcggctagtatcattactgtttcagctgatcagcgccgtcgaagagctctggagcctcgctctctggagaacttctgtgccgacgagcttacccgctgggtaaagtcggttggcactatgggacgatcatcatcttcatcgccatcattaccacccatcgccattgtaccaccaccacccacacccaggccagctcaaggtggttcaacggaggtggtggtggccgcaggagccaatgcacgcgatgctttgacttccgtggcgaccacccatttcgaccgctccgtgtggattaacctcccggcgatgcatctccaccgctcttggcaccaaatcagcaccaaggccatcctctgctacatcctgcgcgaatgcgaatctctcaataagcaaggcaaagatcatggccaggtggacgaccgggatgatcaaatgttgcaaatgggatgtttactattattacagatgggaaatattgtatcatatccatagggacttttatcgacaggttaatcctaagatggaagaaatcgagggtaatattactaagaacagtgctgcagaagaagaacaagaagagaaaattaaaggagaagctgcgtacggaaacaagactgaagacgaaatcccccaaacccctgatggtagtatctccaagaccgagccagtgggcatactcttcagagcactgcagcctaatgccgtgtcaaatgttgcaataatggggactaaccaaccattggatgaacagaacatattccccgagacggccaataagcttaagaagcatatcgaatcaggccaaaccgagttttcaattcatctcgatcaagccaaatatgaatccatcctgcgcgaggtgttcccccttgcaaccagcaaaccccagaaggtccaggaaggtactactgctctcagtagtgatagcagtagccatgttgctgcagccaccgccgctgccgctgcagcgactactgctgctacattggagaaagttcagatcgaacaaatcatccacaagactaaacaagacatcctacaatgcatcctgcaggagctacagcagcagcagctaccagaagctgacaaatctctcaaggaggagggactaacaaaacctaaacctgcagttcaggatgatcatgctagtgctgccaatgaagccaaggaaaacaagccgctagcagccaaggatgaagcaaaggaaaacaagacgccagtagccaaggatgaagcaaaggaaaacaaggcaccagtagctcaggatgaacatgctgttgctgccaacaaaaccaagtaaaacatcggaaaaatcatgtccaagattagtaatgaagctactaccgcgactcctcagcctcctactactattagtacagctactacaatgttgggcaaggatcagattgaagaaatcatccaaaaggttaagcaacaagtcctacaaggtctacatcaccggcctcctccccatcctcccagagcagataggtcgtttaagggggagccaggcatacataaaccaggtggggatgaatatgccaatgctatcaaaaataccaagcaaaagatcaaacaactcacaggaaaaattatggagcagatgacaatccaaattatatgtgacaagatcaaaacactcttgggtggtaaaaagaccatgattatcattgaagatgataaagattatgcatcccagtggagggagatcacaaatgctttgcatcagctgtcaagctccggcagtgcaatggttgtgaccaccccgaacattcagaaggccaaagaaatttgctgtccacagcaggagcctataaccaattctattgctggcttgtactatgatactttgctcaagcttacaagcaagagggtaaataaagatgcaaaccagattttccatgacatcttggacaagtgttatccaagcgaattctgcatgaagatcttcgctcacgccctctacgccaatcccaacagaagcaaacaagatctacgcaagttgcttgattccctggattcaaaaatatcactaggcatcaatgctaagaagatgatcaagttctcctacactgatctccgcaaagaatacaagtcatgcttcctgtacctagcaatcttccctcctggttaccctgtcagatggtcaaccatagtagggcgctgggttgtagaagggctaataactaaggaagactggcctagtgcagtgcatcatgctgaacgatgttttgatacactcattgatatgtggcttgtctatccaagtgatattggtggtgcaggaaaggtaaagagcggcattgtaggcgatcttgttcatgagtttattaccagaatagccaagaaacaacatattgtggagacacgtctgtcacgtcatttggcccgccatttctccattttcaatgatatccgactccgtggctctgatagaatagacaagttcttgagaaagctccctgaaacatctcaaatgtcaatgcttaaggtgttagatctagaaggttgtcaatgcttccagaggaaccagcactacctcaaggacatctgcaataatattttactactcaagtatttgagcctaaggagaacagatgttacacagctacctactgaaatcaacaacctctatgagctggaggtattggatatttggcaaactgaggtgcctgagtatgcaacaagacatatcatgctcctgaagctaaagcgtctgctggctggctgtattgattcaaacagatcaagtaatgttaaaaacaacatttcattcaggaatgaggcgccattatcctccagcgtccaaattccactacaccacaacactaaaaagaagacagtcgtctgtcggtagaaaaaaatttagatgtcactttgtctgtcggaaaatatcctgtcacacagtctgttggtaaaaataaatttttttaacacactgtctgtcggtaaagattagtggcaagttgtctgccactaattgatctgtcccgtccaattgtctgtcgctatatctgtagatgcccaggcgAaaaaaaaaggcgcggcccaaatgtatcggcaggagaaacgagcgctagacaaaaaaaggaatggcgcggaacaaaattttcagcaccaaaactccaaacaaacagacctctcttctctctcacacactctctctcagaaacctgaaaaaatccccactccaagacctagcaggtagcagcaccgcctccgcctccgcctcatctcctccccaaccagcagcgccgccgccgcttcctctccaagcagcgccaccacctcctcctgtcccctcctccatctcccccacatcatccacgatgtattgcccccggtggttcatccatgtggcccatcccacatgaatccaccatctccacgcccccaaggtggttcctgcagggaggtcgcatttggctgcgattcatcaccaagaacacgacctcatcactcctagggagccacctgcatctgtgctcaccagatctgcttcacctgaggttctgggcaccgtcgtcccttcttaaagctcaagacggcgtttctttgtccactgcaatcaacaacacaaggtcaagcttgtccccccattccctgcttcctcttcccctttcctcctaatgtttcttcccccttatcttaactttattccctaggcagatgtggtgatggagcagagttcattgttgtttgttctgttttatgtttagtcttgtgctaagatttttaattttactaatggggtagaaatgatagatgatggttcttactgtctttgtaaaaggaatatttttccaattggttgttgtcccatcccttctgagatgttactactcatgtgtgcttatttcaccctggcataaccaattttctaccttttccattgcagatctatcttcagtagttatggtggaatttgcttaattcttgtctacttgacctccctgacatatttagctaggtatggaagtggaactccttctctgtttattagtttatgactagggggctcctctgattatgtaagtaaagcagcagaccatcaaatgcgagtatccattctttgtctggatttaggtgtatagctgcctttttatttgtgctaacaattaacaaaatttaccttaagtgatatggtatctaactaacccattgtactgcatataaacagggtgactacttgattttgtttattgtatttcatctgaaaatacaaatgttcagtggcttaagtaaaaagaaatacagatgctcttttctgaacctgaggattgtcactcagattatttaatttttcaattgcattgcacaagagcaaaatatatcgcagaggttgcatttaaaattttgtatttattatccaaaaatgtagaaggtcttgctgagtaatcagagacaccaacaaggttggaagcaaaccagaacaaattaacaagcaaacgcacaactaaaaggtacatatgtgtttcccttactctttgacatcagtttttcttacttctatgtggtttactaactacttttacatactttagTttttttttacatgatgttttgccttttgaatgtatgactggaatgcttgttgagcttgagagctatggcaaccatttgtgtttttgcagtatcataacaaatatttgcattttatattcagacatttagtatttcattataaaaggcaagcatggataagagatggatggatctgcctaggtacaaacacacaattactagcatggaattgtttagcctcactatcttcatttgtccaaactctaataatatagtatttcaggagcacaactgagtacagacgtggtgtcaataacttcatagagtttgcttttactcattcagcaaaaggaaataaaatactgtgtccttgcaagaagtgtgttaattgttcatggttggaagcaaacattgtaattgaacacctgatatgtgatggatttaagcatgggtaccggctgtggatttttcatggggaagcatcatcttctgcacattgcactacacatgaacaagttcaagtagaacagagggcagttgatcgtgatgaaattcctgaaatgcttagagatatggcatatggtttagatcaaatgggggaggggggtgctgctgatggcagttcaggggatgccaataatgatgccgatgatttttatagattagtagatgatgcaagtcaggagctgtaccctggttgcaagaccttctctaaactaaatttcttagtccgtttgctgcatacaaaatttctaggaggatggagtgataaaagctttgacatgctactggacttacttagagaggcatttcctgaaggtgcagcactatctaaaaatttttatgaagcaaagaagaccgttaaatctctaggtcttggctacattaacattcatgcttgtgaaaatgattgcatattattttggaaacagtatgaaaattatacttcctgcccaaaatgtaatacttctcgatggaagatggaaagaaagagtcttgatggaaaacgtttccacaaagttcctagaaaagttcttaggtatttcccaattaaggaaagacttcaaagactatacattaacccagagatggccaaaaatatgaggtggcatgatgaaggacgtacaaaagatggattgcttagacatccagcagattctctagcttggaaacacttggacacagtccatcctacctttggtaatgaaagtcgtaatataagattagcgttagctactgatggcttcaatcccttcagatccttgaattctacccatagtacttggcctgttattgcaattccatacaatgtgccaccctggatgtgtatgaaacaacctaatttcatcctatcactgttaattcctggtccaactgcccctggtaatgatatggatgtctacatggaaccattaatagatttggaatctctttggcgtgaaggcattaggacttatgatgcttctaagggtgaatttttccaactgcgtgctgcagtattaaccaccatatcagactatcccggcttaggatattttcatggatgcacaacttcaggtgaagttgcttgcactgattgccacatagaaaccggttatacaaggctatcaaagggcagcaagagttcttacatggcacatcgcaggtttttagatgctgatcatagatttagatcagatacaaaatcatttgatggcacaacagaatttagactagcaccttctcctctttctggtgaggatgttttgaggcagacagaacatttaaatgtagtttttggcaaggacccaacaggaaaaaaacccacaactaagaggaagagaggagacccaccaatattgtggaaaaaaagatctatccttttcaggttaccctattggaaagatgttatgcttcgacacagttttgatgttatgcacattgagaaaaatgtttgtgataatataataaatacacttttggtaatagatggaaagtccaaagataatctgaattctcgcttagacctccaacttctggggataaggaaagatcttcatcctgttaaagttggagaaaaatatttcttacctcctgctccatacacaatgagtccagatgagaagaagatgttttgtgaagttttgaagggagtgaagtttcctgatgggtatgcgtcaaatatacacaataatgttcgtgttaatgagaaaaagttggttgggttaaagagccatgacaaccatattttgctgcaacacttgcttcctctagcgatcagaaggatcttgcctgagagagtttgtgcagcgctgatccgtgtgagcaactttttcaagcaaatttattctccagtgatacgcataagtgatatgcaaaagcttgaggcagaaatagctgaaaccttgtgcatcttagagacgatattcttgccatccttttttgatattatggtgcacttgactgttcatctccctgcccaagtgtgtctcggtggtccagtattgtaccacaatatgtatccagttgagaggtaattttgtaaaacattttttttgaaagaaaactatgttaatttgtttgaaaaggctttgacaattaatgtacccattatctgtaggtttttgatgaggttgaaagggtatgttcgtactagaagtcatccagaggttctatagctgaaagttatatatttgatgagagccttacattttgctctcaatatctgaatggttgtgagactagatatacacgaaaagacaggaatgatgatggcaccacaaatataaattctggtatcaatccatacttttcaaaaaatgttgggcgaggcttagttggcaaaagtgcagttactttagattaccaagcatgggttcaagctcatagatacatcctattgaactatgatcatatcgagccatttatagagtaagttatacaccttagttatattttcttttatgtatgtatatgtagcaatcatgaattgttccttgcagcaagcacttggaatacctttcaactaattgtcgaaataagcgtgaaattgatcgtttgcatcatgaaacgttccatgattggttcaggcttcatgtaagttaaaaagtgcttatctatgtgaataccttgtagcacaaatattttggagttgaccatatcattcaataactacaggtagctgaattaaccatgagtagtgagcaagtaagtgatgaagtgcaaattttagctaaaggccctctattatttgcaaagaagtacaatagctatgcaataaatggatataatttccatacaaaggcttatgatgagggtaggtctgttcaaagcagtggggtagctatagtggcagagacttcttgttatattgggaacaatgagagccctatgattagaaagaagacatattaTgggattattacagaaataatagagttggactatttccgcaaagggaatattgttcttttcaagtgtgattgggttgacaaccgagtagaagataaatgggtgaaggtagacaaatttggtattgttaatgtgaacttcaagcatttattcaacactggtgaaaagttagcagatgaacctttcatattagcctcacaagctattcaggtttactatgtaatggatccactagaaaaggattggttttctgtgaggcaatctaggccacgaaactgctatgacctggctgaagatgaaaatgaacatttggagaacaattccgaacttacaagcccatatgttaatctgagcaataatgcaaattttggtgtgattgaggatggcagtcattttagaaaagatttaggtggttccattgttgacctaagtgagaaagggaagtaagtgtcatttgttatttactatatggtactgctgctacatgtatgtgtgtgcatgactaattacatatgctgacatatctacttttgcctttcaggagaaaaaatgcgaaaaggaggaggaagtagggatggcacacctgtgaatgactatgaaaggaggagggatcaaaatgttgctgagaacaagcgcaggatacaagttctaaatctagaatctatgctaaagtctataaggactgaaggagctagctcttcacagcaagctaagaaaactagcaaggtatgctgatatgtttttattttttttgtgatgcattgctattaacaaaatcatagtggtttaacaagtattttgatattgtagaagagaaaatgcattagctctgtgccaatcgaacctcgaaatctacaccccagactagcaagaattgatacaacaaatgagcatgtaggacatagtgatctgcaccctagtctaccaagaaatggaagtactaatggtcctgaaggacaagatgaaggtcctcaacctgtggctgctgaacagaatgggggtatggttttcttttatttttataaatatgagcaattcatatattttattgactaattaactgacttgcaaatttaagattccaacagagcacaaccaaagaaacgagaaggaagaaaattcactagaaaggataacatatggtttagagaagaagacgagccactgatcaagatggagttcaacgaatttgatcagccagtagggaaagctgctaaagagtttccacatgttgttggtacacttgtaagaactaaggatttccctctcaatcatgatgactggagacatgttgatgaagattcgaagcagttcattatcgatgctttggaggtatgacaactaatatatttgttctattatcgtgctcacaatcaagacttcaagacatggtactttttttctttatacagatgcccttgttttattataataatgtagctcctgttattctctgctcttagctaagcttttatgtgctatatgtctaggtgtaggaactgattttggattattcttttgacctaatggatgtaacctttcttggcatagtgcgtatatgagatggatgaacggcttgaaaattattctttggctactgctgcgaagaagtggaaggattacaaagctaatctgaagaaagcccattttaatgagacaaagactgaggaggaacttattgcagcttgtgataaaagagtgctacctgaacattgggagtggcttgtccatcattggctatcaccagaagcacaggtacactgatgattaaatcattaattgttttccttgttgtttgtttaattaaatttatttttgaaggctcgtagcttaagaggcaaaatgaatcgtggcaaggtattaactccacatacctctggtagcatgacatttgctcgtgcccgacatgaatgggtaaatttatcaaacaattttttttgctagtattcactccatttgtgcctttttgtcactagactgtttcgatgaatgcagtttgtggaacatggttacaagccacgcagagatgagatgtatatcaaaacccatacacgtaaaaatgggactccattgacacaagctgcagagagtattgtaagctagtccaactttacatctacattcattcatatttttttgctgctaaaattggttctgttctagagaaaacttcaagaagcaaccacaaagtatccagaattgagagagaaaactgtgcaggaaggtgatgttttctctcatgtatttggacgtgagccaagggggtatgttcgctctattggtttaggacctacaccctctactttgggcattcatgggcatcgcaaatatactccaacaaaggttcaaatggcaattcgtggtcgacaaaaagctgagcaagaggtcacaatgcttaaaggaactgtggacgagctacgggatgagattgtagagttgaagcggatgttctatgctagtcaaggaagagaaactacaccaaatgttgggagtcctcttgaacgtggttccaatcctacacccaatgtggatgtaagtgaggctgagtatgaccaagaaatgaatgaccacgaagtgagaaaccatgactacaggcagcatgtaagcaacagtctctaacggtgctcttttctcactttgaatattcttttataaacaatctgctatattgttgtaggtcaaccaacaagtgagtgaccaagaactgagcagccacgcttacaggcagaaggtatgcaacattagctattggcttatttttcatcttttcatatagatcttactgaaaaaagtgacaaactttaaaaatgtgtagttaccacgtaggagagctgcgatccccgaaggaagacatgatggggtataacttcttagatattcttgctgtcaatgtttatgttttggccccagcctaataaatttagactcgtcctactttacaatgtttctgtttttggtttcgatctaataaattacttgttatattcttctctaaaccttgtgccacatcattgtaggttgatcaacaagtgagtgatcatgaagttagcaaccatgcttacaggcagcaggtatgcaacactttgctattggttctagattgtttttatgtgttttatgtcggactaagtaaaaaatggtgacacttaactctatgaatgtgtagttaccacgtaagacagttgcagtcccagaaagaagaaatatGggggtataatttcttacaaagtccttatgttaatatctatgtttcagcttcagtttgataaataaattgtagtcctacttttgtgaaaaccgtgttatattgttgtagggtggccaagaagtcacacttctttctcttgtggctccatacaatcttcctgtggcgaaggctactgtgcaaacaagtaaccccggcacattggtgggtggaactgctcttggtccaagattctatgaagtggttgtgaactcagtcattaaaagggatgtagtgcttcctcgtccatatgggagcatacaaacaatggcaaatgctttcgggcgatcaattgcttggccacgtactcatgtaatgtataggctaaattatttgtgtttttacctacgtgtgatctgcatatatactactaactcctattaactttttatagatcaagtacgatgaaaatgcagcactactaactcgggatcagtcaggtatgcactcttttgtctaattatagacactatctaaagttgataatgcttcactcattaagtttactgttttacttcctttcgaattcttccgactactccaaatattcactgattgtcaactagattgaaccttcacaaaaattaaacttgtgtcttgtatggtgcttgtaatatgttataatgtagcaatcaattactgaatcatcggttgttgtatggcttacacttgtcttgtataaaccccttatgcattttatttttcaggtagtggtaggagctgagctcacagcatgactgaagactttggaaggtggagactcatggattgttgtgtgaaatcttttgaacatatctaggtgtagcatgtggtatattttgattaggagcgctttaaaactgtgacatttaaagtggacctaaatctaaagtactatattttggttaggagtactatactgttatcttggagattccagttttctaggattaagatatataagctcatcgatttatggttgtagctttgctgcatacagtggagacatatgagcatacttattattttgtgacgtggggatctatatggacctagttatggaagttatggttaatgtgttgttactgatggatatgccacaagatttccttctagcctgttgatggcattgatgtgctttactacatatctatgaatgaaaactgggatcgcattgatgcgctttacatgcatgtctatgaatgaaaaccgaaggcacagaaacatcttgtggaagcaaaagcatcacacaagtgaaatattttccatgatatttgaaattcttcaaacagaataaaaagtgcagaatatctcctaggaattatctagcaaagagtttgccaggaaaacaaagaataagggcagacatctgccgggagtgaaatttctgtcaaggtgtatttgtctgttggaaattatcttgtctgtcaggaaaaatactgaactaccgacagacatttgccgccaaaaaaaaggtctgtcggtagatgtttttctcgactgctggacccctggcaaacagtcatggcaaactgtgtgtcagtagtagtctttaccgacagacggtttgccactgatagctacttatcccaacagatcaagtgtttctgtacctatgtcgtggtgtagtgttcctcgcaagataaaaaaaatgtctagcatggaggtactttccaatgtcaaggctccatggactagcagagagttgaaagacattgggaagctatggcagctgaggaagctcggtgtggttatagacgacaaggacagtgtacttaagaatttgcttacagcaatcagtgacctttgtgagtgcctccgatctctgtctatcactattgttcccagtacaaaaggagagggcactccatccaatggagacttaccagagtatatttcccgttgcctgaaataccgtcccaagcttcttgagagcctgtccctccagggtaccacgcaaaagggccagcttcttacattattggttgaatgttttactaagcttgccaaggtaactttgagttgcacctcattgaaacagaaaaatctggagggtctcggtgatctgcccaacttatcctatgttaggttcagacacaagggatacacagatggcaaactcaccttcaatgagcacaaattcaaaaatctcaagtactttcttgtcaagggcaacaacatgagaggcgtcgaatttcagaaaggagcagctccaaggctcgagaagattgtattgtccttcactaacatagagtctctttatggagtcggggaccttccaaaagtggaagaactcgaattgaagagaaacaagttccttctttcactatctgaagagggagaaactcttgagaaatacatgctcaccttcaagaaggatgaattccaacatctcaagtacttacttgctgagggtttcagcaagaactttgaggcaaacataacctttgaagatggagcaactccaaagcttgagaagatcatcttgtactccttcgccaacataatgtctcatcctggggtcagtagccttccaaaatttgagctcgagttgaagggaaagaagccacttctttcatcatttgaaaatgccaataaaatttccaaggtgactcttcactctaccttgatgaagcatgatgacctacaaatcttcgctaaaagaccaagcatatgctgtctaattctcttgggcaattcttatgatgataccctgcttaccttcaacaaaggagagtttcccaagctcaaccttcttattgttgagtgccctaccatcaccaacatcagcttcaccgaaggggcagcctatgcttga
More
|
||||||||||
| CDS seq | atggctgagggtgcggtgggcgccgtgacgacgctgctgggcctcatccgcgatgaggcgcagttgctaggccgcgtgaagaaggacgtgcggttcatcaaggaggagatggagagcatgaggagcttcctggctcacctgaccgagacggagccacccggtggcgagcacgacgagcaggtccggacgtggatgaagcaggtccgggagctcgcgcaggactgcagcaactgcatcgacacctacctgcagcgcggcgacccagcggtccgccacgccagctggccgggccgcggcgccggcatcctccagcgctacatctgctgggctccttggatggtcgagaagttgctcgcccagcactacgcggccatccggctgcgcgagctcatggatcgtgcccacgacgtcggccagcgtcgattgaggtacggcgtggaggtccccggcaagctgtcatccaaggctgcaggaggggcagcgtcgtcatcggtgcggtccgaagaagcttctccatcaaccaccataggtgcacaagcaccagacaaggaagatgaagacgaggaggaggagcagcagcagcaagaccaagagcacgacgcggcaacgtcgacctcggctagtatcattactgtttcagctgatcagcgccgtcgaagagctctggagcctcgctctctggagaacttctgtgccgacgagcttacccgctgggtaaagtcggttggcactatgggacgatcatcatcttcatcgccatcattaccacccatcgccattgtaccaccaccacccacacccaggccagctcaaggtggttcaacggaggtggtggtggccgcaggagccaatgcacgcgatgctttgacttccgtggcgaccacccatttcgaccgctccgtgtggattaacctcccggcgatgcatctccaccgctcttggcaccaaatcagcaccaaggccatcctctgctacatcctgcgcgaatgcgaatctctcaataagcaaggcaaagatcatggccaggttaatcctaagatggaagaaatcgagggtaatattactaagaacagtgctgcagaagaagaacaagaagagaaaattaaaggagaagctgcgtacggaaacaagactgaagacgaaatcccccaaacccctgatggtagtatctccaagaccgagccagtgggcatactcttcagagcactgcagcctaatgccgtgtcaaatgttgcaataatggggactaaccaaccattggatgaacagaacatattccccgagacggccaataagcttaagaagcatatcgaatcaggccaaaccgagttttcaattcatctcgatcaagccaaatatgaatccatcctgcgcgaggagctacagcagcagcagctaccagaagctgacaaatctctcaaggaggagggactaacaaaacctaaacctgcagttcaggatgatcatgctagtgctgccaatgaagccaaggaaaacaagccgctagcagccaaggatgaagcaaaggaaaacaagacgccagtagccaaggatgaagcaaaggaaaacaaggcaccagtagctcaggatgaacatgctgttgctgccaacaaaaccaataatgaagctactaccgcgactcctcagcctcctactactattagtacagctactacaatgttgggcaaggatcagattgaagaaatcatccaaaaggttaagcaacaagtcctacaaggtctacatcaccggcctcctccccatcctcccagagcagataggtcgtttaagggggagccaggcatacataaaccaggtggggatgaatatgccaatgctatcaaaaataccaagcaaaagatcaaacaactcacaggaaaaattatggagcagatgacaatccaaattatatgtgacaagatcaaaacactcttgggtggtaaaaagaccatgattatcattgaagatgataaagattatgcatcccagtggagggagatcacaaatgctttgcatcagctgtcaagctccggcagtgcaatggttgtgaccaccccgaacattcagaaggccaaagaaatttgctgtccacagcaggagcctataaccaattctattgctggcttgtactatgatactttgctcaagcttacaagcaagagggtaaataaagatgcaaaccagattttccatgacatcttggacaagtgttatccaagcgaattctgcatgaagatcttcgctcacgccctctacgccaatcccaacagaagcaaacaagatctacgcaagttgcttgattccctggattcaaaaatatcactaggcatcaatgctaagaagatgatcaagttctcctacactgatctccgcaaagaatacaagtcatgcttcctgtacctagcaatcttccctcctggttaccctgtcagatggtcaaccatagtagggcgctgggttgtagaagggctaataactaaggaagactggcctagtgcagtgcatcatgctgaacgatgttttgatacactcattgatatgtggcttgtctatccaagtgatattggtggtgcaggaaaggtaaagagcggcattgtaggcgatcttgttcatgagtttattaccagaatagccaagaaacaacatattgtggagacacgtctgtcacgtcatttggcccgccatttctccattttcaatgatatccgactccgtggctctgatagaatagacaagttcttgagaaagctccctgaaacatctcaaatgtcaatgcttaaggtgttagatctagaaggttgtcaatgcttccagaggaaccagcactacctcaaggacatctgcaataatattttactactcaagtatttgagcctaaggagaacagatgttacacagctacctactgaaatcaacaacctctatgagctggagaagagaaaatgcattagctctgtgccaatcgaacctcgaaatctacaccccagactagcaagaattgatacaacaaatgagcatgtaggacatagtgatctgcaccctagtctaccaagaaatggaagtactaatggtcctgaaggacaagatgaaggtcctcaacctgtggctgctgaacagaatggggattccaacagagcacaaccaaagaaacgagaaggaagaaaattcactagaaaggataacatatggtttagagaagaagacgagccactgatcaagatggagttcaacgaatttgatcagccagtagggaaagctgctaaagagtttccacatgttgttggtacacttgtaagaactaaggatttccctctcaatcatgatgactggagacatgttgatgaagattcgaagcagttcattatcgatgctttggaggtcaaccaacaagtgagtgaccaagaactgagcagccacgcttacaggcagaaggttgatcaacaagtgagtgatcatgaagttagcaaccatgcttacaggcagcagttaccacgtagtggaaaaatactgaactaccgacagacatttgccgccaaaaaaaaggctccatggactagcagagagttgaaagacattgggaagctatggcagctgaggaagctcggtgtggttatagacgacaaggacagtgtacttaagaatttgcttacagcaatcagtgacctttgtgagtgcctccgatctctgtctatcactattgttcccagtacaaaaggagagggcactccatccaatggagacttaccagagtatatttcccgttgcctgaaataccgtcccaagcttcttgagagcctgtccctccagggtaccacgcaaaagggccagcttcttacattattggttgaatgttttactaagcttgccaagaaaaatctggagggtctcggtgatctgcccaacttatcctatgttaggttcagacacaagggatacacagatggcaaactcaccttcaatgagcacaaattcaaaaatctcaagtactttcttgtcaagggcaacaacatgagaggcgtcgaatttcagaaaggagcagctccaaggctcgagaagattgtattgtccttcactaacatagagtctctttatggagtcggggaccttccaaaagtggaagaactcgaattgaagagaaacaagttccttctttcactatctgaagagggagaaactcttgagaaatacatgctcaccttcaagaaggatgaattccaacatctcaagtacttacttgctgagggtttcagcaagaactttgaggcaaacataacctttgaagatggagcaactccaaagcttgagaagatcatcttgtactccttcgccaacataatgtctcatcctggggtcagtagccttccaaaatttgagctcgagttgaagggaaagaagccacttctttcatcatttgaaaatgccaataaaatttccaaggtgactcttcactctaccttgatgaagcatgatgacctacaaatcttcgctaaaagaccaagcatatgctgtctaattctcttgggcaattcttatgatgataccctgcttaccttcaacaaaggagagtttcccaagctcaaccttcttattgttgagtgccctaccatcaccaacatcagcttcaccgaaggggcagcctatgcttga
More
|
||||||||||
| Protein seq | MAEGAVGAVTTLLGLIRDEAQLLGRVKKDVRFIKEEMESMRSFLAHLTETEPPGGEHDEQVRTWMKQVRELAQDCSNCIDTYLQRGDPAVRHASWPGRGAGILQRYICWAPWMVEKLLAQHYAAIRLRELMDRAHDVGQRRLRYGVEVPGKLSSKAAGGAASSSVRSEEASPSTTIGAQAPDKEDEDEEEEQQQQDQEHDAATSTSASIITVSADQRRRRALEPRSLENFCADELTRWVKSVGTMGRSSSSSPSLPPIAIVPPPPTPRPAQGGSTEVVVAAGANARDALTSVATTHFDRSVWINLPAMHLHRSWHQISTKAILCYILRECESLNKQGKDHGQVNPKMEEIEGNITKNSAAEEEQEEKIKGEAAYGNKTEDEIPQTPDGSISKTEPVGILFRALQPNAVSNVAIMGTNQPLDEQNIFPETANKLKKHIESGQTEFSIHLDQAKYESILREELQQQQLPEADKSLKEEGLTKPKPAVQDDHASAANEAKENKPLAAKDEAKENKTPVAKDEAKENKAPVAQDEHAVAANKTNNEATTATPQPPTTISTATTMLGKDQIEEIIQKVKQQVLQGLHHRPPPHPPRADRSFKGEPGIHKPGGDEYANAIKNTKQKIKQLTGKIMEQMTIQIICDKIKTLLGGKKTMIIIEDDKDYASQWREITNALHQLSSSGSAMVVTTPNIQKAKEICCPQQEPITNSIAGLYYDTLLKLTSKRVNKDANQIFHDILDKCYPSEFCMKIFAHALYANPNRSKQDLRKLLDSLDSKISLGINAKKMIKFSYTDLRKEYKSCFLYLAIFPPGYPVRWSTIVGRWVVEGLITKEDWPSAVHHAERCFDTLIDMWLVYPSDIGGAGKVKSGIVGDLVHEFITRIAKKQHIVETRLSRHLARHFSIFNDIRLRGSDRIDKFLRKLPETSQMSMLKVLDLEGCQCFQRNQHYLKDICNNILLLKYLSLRRTDVTQLPTEINNLYELEKRKCISSVPIEPRNLHPRLARIDTTNEHVGHSDLHPSLPRNGSTNGPEGQDEGPQPVAAEQNGDSNRAQPKKREGRKFTRKDNIWFREEDEPLIKMEFNEFDQPVGKAAKEFPHVVGTLVRTKDFPLNHDDWRHVDEDSKQFIIDALEVNQQVSDQELSSHAYRQKVDQQVSDHEVSNHAYRQQLPRSGKILNYRQTFAAKKKAPWTSRELKDIGKLWQLRKLGVVIDDKDSVLKNLLTAISDLCECLRSLSITIVPSTKGEGTPSNGDLPEYISRCLKYRPKLLESLSLQGTTQKGQLLTLLVECFTKLAKKNLEGLGDLPNLSYVRFRHKGYTDGKLTFNEHKFKNLKYFLVKGNNMRGVEFQKGAAPRLEKIVLSFTNIESLYGVGDLPKVEELELKRNKFLLSLSEEGETLEKYMLTFKKDEFQHLKYLLAEGFSKNFEANITFEDGATPKLEKIILYSFANIMSHPGVSSLPKFELELKGKKPLLSSFENANKISKVTLHSTLMKHDDLQIFAKRPSICCLILLGNSYDDTLLTFNKGEFPKLNLLIVECPTITNISFTEGAAYA |
||||||||||
| Function | Disease resistance protein Piks-2 [UniProtKB/Swiss-Prot:P0DO10] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0022170 | OsLima_11g0022170.01 | Chr11 | 27837796 | 27852365 | + | NAM | ||
| CDS seq | atggctgagggtgcggtgggcgccgtgacgacgctgctgggcctcatccgcgatgaggcgcagttgctaggccgcgtgaagaaggacgtgcggttcatcaaggaggagatggagagcatgaggagcttcctggctcacctgaccgagacggagccacccggtggcgagcacgacgagcaggtccggacgtggatgaagcaggtccgggagctcgcgcaggactgcagcaactgcatcgacacctacctgcagcgcggcgacccagcggtccgccacgccagctggccgggccgcggcgccggcatcctccagcgctacatctgctgggctccttggatggtcgagaagttgctcgcccagcactacgcggccatccggctgcgcgagctcatggatcgtgcccacgacgtcggccagcgtcgattgaggtacggcgtggaggtccccggcaagctgtcatccaaggctgcaggaggggcagcgtcgtcatcggtgcggtccgaagaagcttctccatcaaccaccataggtgcacaagcaccagacaaggaagatgaagacgaggaggaggagcagcagcagcaagaccaagagcacgacgcggcaacgtcgacctcggctagtatcattactgtttcagctgatcagcgccgtcgaagagctctggagcctcgctctctggagaacttctgtgccgacgagcttacccgctgggtaaagtcggttggcactatgggacgatcatcatcttcatcgccatcattaccacccatcgccattgtaccaccaccacccacacccaggccagctcaaggtggttcaacggaggtggtggtggccgcaggagccaatgcacgcgatgctttgacttccgtggcgaccacccatttcgaccgctccgtgtggattaacctcccggcgatgcatctccaccgctcttggcaccaaatcagcaccaaggccatcctctgctacatcctgcgcgaatgcgaatctctcaataagcaaggcaaagatcatggccaggttaatcctaagatggaagaaatcgagggtaatattactaagaacagtgctgcagaagaagaacaagaagagaaaattaaaggagaagctgcgtacggaaacaagactgaagacgaaatcccccaaacccctgatggtagtatctccaagaccgagccagtgggcatactcttcagagcactgcagcctaatgccgtgtcaaatgttgcaataatggggactaaccaaccattggatgaacagaacatattccccgagacggccaataagcttaagaagcatatcgaatcaggccaaaccgagttttcaattcatctcgatcaagccaaatatgaatccatcctgcgcgaggagctacagcagcagcagctaccagaagctgacaaatctctcaaggaggagggactaacaaaacctaaacctgcagttcaggatgatcatgctagtgctgccaatgaagccaaggaaaacaagccgctagcagccaaggatgaagcaaaggaaaacaagacgccagtagccaaggatgaagcaaaggaaaacaaggcaccagtagctcaggatgaacatgctgttgctgccaacaaaaccaataatgaagctactaccgcgactcctcagcctcctactactattagtacagctactacaatgttgggcaaggatcagattgaagaaatcatccaaaaggttaagcaacaagtcctacaaggtctacatcaccggcctcctccccatcctcccagagcagataggtcgtttaagggggagccaggcatacataaaccaggtggggatgaatatgccaatgctatcaaaaataccaagcaaaagatcaaacaactcacaggaaaaattatggagcagatgacaatccaaattatatgtgacaagatcaaaacactcttgggtggtaaaaagaccatgattatcattgaagatgataaagattatgcatcccagtggagggagatcacaaatgctttgcatcagctgtcaagctccggcagtgcaatggttgtgaccaccccgaacattcagaaggccaaagaaatttgctgtccacagcaggagcctataaccaattctattgctggcttgtactatgatactttgctcaagcttacaagcaagagggtaaataaagatgcaaaccagattttccatgacatcttggacaagtgttatccaagcgaattctgcatgaagatcttcgctcacgccctctacgccaatcccaacagaagcaaacaagatctacgcaagttgcttgattccctggattcaaaaatatcactaggcatcaatgctaagaagatgatcaagttctcctacactgatctccgcaaagaatacaagtcatgcttcctgtacctagcaatcttccctcctggttaccctgtcagatggtcaaccatagtagggcgctgggttgtagaagggctaataactaaggaagactggcctagtgcagtgcatcatgctgaacgatgttttgatacactcattgatatgtggcttgtctatccaagtgatattggtggtgcaggaaaggtaaagagcggcattgtaggcgatcttgttcatgagtttattaccagaatagccaagaaacaacatattgtggagacacgtctgtcacgtcatttggcccgccatttctccattttcaatgatatccgactccgtggctctgatagaatagacaagttcttgagaaagctccctgaaacatctcaaatgtcaatgcttaaggtgttagatctagaaggttgtcaatgcttccagaggaaccagcactacctcaaggacatctgcaataatattttactactcaagtatttgagcctaaggagaacagatgttacacagctacctactgaaatcaacaacctctatgagctggagaagagaaaatgcattagctctgtgccaatcgaacctcgaaatctacaccccagactagcaagaattgatacaacaaatgagcatgtaggacatagtgatctgcaccctagtctaccaagaaatggaagtactaatggtcctgaaggacaagatgaaggtcctcaacctgtggctgctgaacagaatggggattccaacagagcacaaccaaagaaacgagaaggaagaaaattcactagaaaggataacatatggtttagagaagaagacgagccactgatcaagatggagttcaacgaatttgatcagccagtagggaaagctgctaaagagtttccacatgttgttggtacacttgtaagaactaaggatttccctctcaatcatgatgactggagacatgttgatgaagattcgaagcagttcattatcgatgctttggaggtcaaccaacaagtgagtgaccaagaactgagcagccacgcttacaggcagaaggttgatcaacaagtgagtgatcatgaagttagcaaccatgcttacaggcagcagttaccacgtagtggaaaaatactgaactaccgacagacatttgccgccaaaaaaaaggctccatggactagcagagagttgaaagacattgggaagctatggcagctgaggaagctcggtgtggttatagacgacaaggacagtgtacttaagaatttgcttacagcaatcagtgacctttgtgagtgcctccgatctctgtctatcactattgttcccagtacaaaaggagagggcactccatccaatggagacttaccagagtatatttcccgttgcctgaaataccgtcccaagcttcttgagagcctgtccctccagggtaccacgcaaaagggccagcttcttacattattggttgaatgttttactaagcttgccaagaaaaatctggagggtctcggtgatctgcccaacttatcctatgttaggttcagacacaagggatacacagatggcaaactcaccttcaatgagcacaaattcaaaaatctcaagtactttcttgtcaagggcaacaacatgagaggcgtcgaatttcagaaaggagcagctccaaggctcgagaagattgtattgtccttcactaacatagagtctctttatggagtcggggaccttccaaaagtggaagaactcgaattgaagagaaacaagttccttctttcactatctgaagagggagaaactcttgagaaatacatgctcaccttcaagaaggatgaattccaacatctcaagtacttacttgctgagggtttcagcaagaactttgaggcaaacataacctttgaagatggagcaactccaaagcttgagaagatcatcttgtactccttcgccaacataatgtctcatcctggggtcagtagccttccaaaatttgagctcgagttgaagggaaagaagccacttctttcatcatttgaaaatgccaataaaatttccaaggtgactcttcactctaccttgatgaagcatgatgacctacaaatcttcgctaaaagaccaagcatatgctgtctaattctcttgggcaattcttatgatgataccctgcttaccttcaacaaaggagagtttcccaagctcaaccttcttattgttgagtgccctaccatcaccaacatcagcttcaccgaaggggcagcctatgcttga
More
|
|||||||
| Protein seq | MAEGAVGAVTTLLGLIRDEAQLLGRVKKDVRFIKEEMESMRSFLAHLTETEPPGGEHDEQVRTWMKQVRELAQDCSNCIDTYLQRGDPAVRHASWPGRGAGILQRYICWAPWMVEKLLAQHYAAIRLRELMDRAHDVGQRRLRYGVEVPGKLSSKAAGGAASSSVRSEEASPSTTIGAQAPDKEDEDEEEEQQQQDQEHDAATSTSASIITVSADQRRRRALEPRSLENFCADELTRWVKSVGTMGRSSSSSPSLPPIAIVPPPPTPRPAQGGSTEVVVAAGANARDALTSVATTHFDRSVWINLPAMHLHRSWHQISTKAILCYILRECESLNKQGKDHGQVNPKMEEIEGNITKNSAAEEEQEEKIKGEAAYGNKTEDEIPQTPDGSISKTEPVGILFRALQPNAVSNVAIMGTNQPLDEQNIFPETANKLKKHIESGQTEFSIHLDQAKYESILREELQQQQLPEADKSLKEEGLTKPKPAVQDDHASAANEAKENKPLAAKDEAKENKTPVAKDEAKENKAPVAQDEHAVAANKTNNEATTATPQPPTTISTATTMLGKDQIEEIIQKVKQQVLQGLHHRPPPHPPRADRSFKGEPGIHKPGGDEYANAIKNTKQKIKQLTGKIMEQMTIQIICDKIKTLLGGKKTMIIIEDDKDYASQWREITNALHQLSSSGSAMVVTTPNIQKAKEICCPQQEPITNSIAGLYYDTLLKLTSKRVNKDANQIFHDILDKCYPSEFCMKIFAHALYANPNRSKQDLRKLLDSLDSKISLGINAKKMIKFSYTDLRKEYKSCFLYLAIFPPGYPVRWSTIVGRWVVEGLITKEDWPSAVHHAERCFDTLIDMWLVYPSDIGGAGKVKSGIVGDLVHEFITRIAKKQHIVETRLSRHLARHFSIFNDIRLRGSDRIDKFLRKLPETSQMSMLKVLDLEGCQCFQRNQHYLKDICNNILLLKYLSLRRTDVTQLPTEINNLYELEKRKCISSVPIEPRNLHPRLARIDTTNEHVGHSDLHPSLPRNGSTNGPEGQDEGPQPVAAEQNGDSNRAQPKKREGRKFTRKDNIWFREEDEPLIKMEFNEFDQPVGKAAKEFPHVVGTLVRTKDFPLNHDDWRHVDEDSKQFIIDALEVNQQVSDQELSSHAYRQKVDQQVSDHEVSNHAYRQQLPRSGKILNYRQTFAAKKKAPWTSRELKDIGKLWQLRKLGVVIDDKDSVLKNLLTAISDLCECLRSLSITIVPSTKGEGTPSNGDLPEYISRCLKYRPKLLESLSLQGTTQKGQLLTLLVECFTKLAKKNLEGLGDLPNLSYVRFRHKGYTDGKLTFNEHKFKNLKYFLVKGNNMRGVEFQKGAAPRLEKIVLSFTNIESLYGVGDLPKVEELELKRNKFLLSLSEEGETLEKYMLTFKKDEFQHLKYLLAEGFSKNFEANITFEDGATPKLEKIILYSFANIMSHPGVSSLPKFELELKGKKPLLSSFENANKISKVTLHSTLMKHDDLQIFAKRPSICCLILLGNSYDDTLLTFNKGEFPKLNLLIVECPTITNISFTEGAAYA
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0022170 | OsLima_11g0022170.02 | Chr11 | 27848515 | 27850631 | + | IsoSeq | ||
| CDS seq | atgaagttagcaaccatgcttacaggcagcagttaccacgtaagacagttgcagtcccagaaagaagaaatatGgggggtggccaagaagtcacacttctttctcttgtggctccatacaatcttcctgtggcgaaggctactgtgcaaacaagtaaccccggcacattggtgggtggaactgctcttggtccaagattctatgaagtgg
More
|
|||||||
| Protein seq | MKLATMLTGSSYHVRQLQSQKEEIWGVAKKSHFFLLWLHTIFLWRRLLCKQVTPAHWWVELLLVQDSMKW |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr11 | 27849055 | 27849342 | + | OsLima_11g0022170.02 | OsLima_11g0022170.02,OsLima_11g0022170.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.257880 | 0.228424 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0645886 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g42700 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0645886 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0021970 | SBH | 0.084209 | 1.163178 | 1.665257 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0021960 | RBH | 0.000000 | 0.198950 | 0.825519 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0021790 | RBH | 0.0 | 0.0 | 0.894479 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0021290 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0021820 | RBH | 0.000000 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0385800 | SBH | 1.274913 | 1.11071 | 3.104537 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0022350 | RBH | 0.038309 | 0.000000 | 0.321106 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0405800 | RBH | 0.203435 | 0.473961 | 1.660659 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0022160 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0022260 | RBH | 0.164275 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0021880 | SBH | 0.0 | 1.393880 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0021470 | SBH | 0.085514 | 0.0 | 0.213602 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0021640 | SBH | 0.030819 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G021700 | SBH | 0.000000 | 0.0 | 0.079685 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0022180 | SBH | 0.000000 | 0.909686 | 0.673293 |
