Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g42700 | OGI:11073050 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:25720581-25721792 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGAGAGCATGAGGAGCTTCCTGACGCACCTGACCGAGACGGAGCCTCCCGGCGGTGAGCACGACGAGCAGGTCTGGACGTGGATGAAGCAGGTCCGGGAGCTTGCGCAGGACTGCAGCAACTGCATCGACACCTACCGGCAGCACGGTGACCTAGCGGTCCGCCACCCCAGCTGGAGCCGCGGTGCCGGCATCCTCCAGCGCTACATCTACTGGGCTCCTTGGATGGTCGAGAAGTTGCTCGCCCAGCACTACGCGGCCATCTGGCTGCGCGAGCTCAAGGACCGTGCCCACGACGTCGGCCAGCGTCGCTTGAGGTACGGCGTGGAGGTCCCCGGCAAGCCATCATCCAAGGCGGCAGGAGGGGCACCGTCGTCGGTGCGGTCTGAAGAAGCTTCTCCGTCAACCACTAGTGCCACCACAGGAGCACAAGCACCAGACGAGGAAGATGAAGACGAGGAGGAGGAGGAGCAGCAAGACCAAGAATACGACTCGGCTAGTAGCATTATTATTTCAGCTGAGCGTCGTCGAAGAGCTCTGGAGCCTCGCTCTCTGGAGAACTTCTGTGCTGACGAGCTTACCTGCTAGGTAAAGTCGGTTGGCATTACGGGACCATCGTCATCTTCATCGCCATCATTACCATCCATCGCCATTGTACCACCACCACCACCCAGAGTAGCTCAAGGTGGTGCAACGGAGGTGGTGGTGGCCGCAGGAGCCAATGCACGCGATGCTTTGGCTTCCATGGAGACCACCCATTTCGACCGCTCTGTGTGGATCAACCTCCAGGCTTTGCATCTCCACCGCTCTTGGCACCAAATCAGCACCGAGGCCATCCTCTGCTACATCCTGCGTGAATGTGAATCTCTCAAGAAGCGAGGCAAAGATCATGGTCAGGTGGACGACCGGGATGATCAATGGGAGGCTTACTATTATTACAGATGGGACATATTGTATGATATCCATAGGGACTTTTATCGACAGGTTAATCCTAAGATGGAAGAAATCGAGGGTAATATTACTAAGAACAGTGCTGCAGAAGAAGAACAAGAAGAGAAAAGTAAAGGAGAAGCTGCATATGGAAACCAGACTGAAGACGAAATCCCCTCAACCCCTGATGGTAGTATGTCACGCCCCAAACTAGCCCCGAACGGCGGCCAGAGTAAGGCGATCCAAATTAACCTGTATACTTGTACCAGTCCCAGGAAATAA
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| CDS seq | ATGGAGAGCATGAGGAGCTTCCTGACGCACCTGACCGAGACGGAGCCTCCCGGCGGTGAGCACGACGAGCAGGTCTGGACGTGGATGAAGCAGGTCCGGGAGCTTGCGCAGGACTGCAGCAACTGCATCGACACCTACCGGCAGCACGGTGACCTAGCGGTCCGCCACCCCAGCTGGAGCCGCGGTGCCGGCATCCTCCAGCGCTACATCTACTGGGCTCCTTGGATGGTCGAGAAGTTGCTCGCCCAGCACTACGCGGCCATCTGGCTGCGCGAGCTCAAGGACCGTGCCCACGACGTCGGCCAGCGTCGCTTGAGGTACGGCGTGGAGGTCCCCGGCAAGCCATCATCCAAGGCGGCAGGAGGGGCACCGTCGTCGGTGCGGTCTGAAGAAGCTTCTCCGTCAACCACTAGTGCCACCACAGGAGCACAAGCACCAGACGAGGAAGATGAAGACGAGGAGGAGGAGGAGCAGCAAGACCAAGAATACGACTCGGCTAGAGCCAATGCACGCGATGCTTTGGCTTCCATGGAGACCACCCATTTCGACCGCTCTGTGTGGATCAACCTCCAGGCTTTGCATCTCCACCGCTCTTGGCACCAAATCAGCACCGAGGCCATCCTCTGCTACATCCTGCGTGAATGTGAATCTCTCAAGAAGCGAGGCAAAGATCATGGTCAGGTGGACGACCGGGATGATCAATGGGAGGCTTACTATTATTACAGATGGGACATATTGTATGATATCCATAGGGACTTTTATCGACAGGTTAATCCTAAGATGGAAGAAATCGAGGGTAATATTACTAAGAACAGTGCTGCAGAAGAAGAACAAGAAGAGAAAAGTAAAGGAGAAGCTGCATATGGAAACCAGACTGAAGACGAAATCCCCTCAACCCCTGATGGTAGTATGTCACGCCCCAAACTAGCCCCGAACGGCGGCCAGAGTAAGGCGATCCAAATTAACCTGTATACTTGTACCAGTCCCAGGAAATAA
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| Protein seq | MESMRSFLTHLTETEPPGGEHDEQVWTWMKQVRELAQDCSNCIDTYRQHGDLAVRHPSWSRGAGILQRYIYWAPWMVEKLLAQHYAAIWLRELKDRAHDVGQRRLRYGVEVPGKPSSKAAGGAPSSVRSEEASPSTTSATTGAQAPDEEDEDEEEEEQQDQEYDSARANARDALASMETTHFDRSVWINLQALHLHRSWHQISTEAILCYILRECESLKKRGKDHGQVDDRDDQWEAYYYYRWDILYDIHRDFYRQVNPKMEEIEGNITKNSAAEEEQEEKSKGEAAYGNQTEDEIPSTPDGSMSRPKLAPNGGQSKAIQINLYTCTSPRK |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g42700 | LOC_Os11g42700.1 | Chr11 | 25720581 | 25721792 | + | MSU_osa1r7 | ||
| CDS seq | ATGGAGAGCATGAGGAGCTTCCTGACGCACCTGACCGAGACGGAGCCTCCCGGCGGTGAGCACGACGAGCAGGTCTGGACGTGGATGAAGCAGGTCCGGGAGCTTGCGCAGGACTGCAGCAACTGCATCGACACCTACCGGCAGCACGGTGACCTAGCGGTCCGCCACCCCAGCTGGAGCCGCGGTGCCGGCATCCTCCAGCGCTACATCTACTGGGCTCCTTGGATGGTCGAGAAGTTGCTCGCCCAGCACTACGCGGCCATCTGGCTGCGCGAGCTCAAGGACCGTGCCCACGACGTCGGCCAGCGTCGCTTGAGGTACGGCGTGGAGGTCCCCGGCAAGCCATCATCCAAGGCGGCAGGAGGGGCACCGTCGTCGGTGCGGTCTGAAGAAGCTTCTCCGTCAACCACTAGTGCCACCACAGGAGCACAAGCACCAGACGAGGAAGATGAAGACGAGGAGGAGGAGGAGCAGCAAGACCAAGAATACGACTCGGCTAGAGCCAATGCACGCGATGCTTTGGCTTCCATGGAGACCACCCATTTCGACCGCTCTGTGTGGATCAACCTCCAGGCTTTGCATCTCCACCGCTCTTGGCACCAAATCAGCACCGAGGCCATCCTCTGCTACATCCTGCGTGAATGTGAATCTCTCAAGAAGCGAGGCAAAGATCATGGTCAGGTGGACGACCGGGATGATCAATGGGAGGCTTACTATTATTACAGATGGGACATATTGTATGATATCCATAGGGACTTTTATCGACAGGTTAATCCTAAGATGGAAGAAATCGAGGGTAATATTACTAAGAACAGTGCTGCAGAAGAAGAACAAGAAGAGAAAAGTAAAGGAGAAGCTGCATATGGAAACCAGACTGAAGACGAAATCCCCTCAACCCCTGATGGTAGTATGTCACGCCCCAAACTAGCCCCGAACGGCGGCCAGAGTAAGGCGATCCAAATTAACCTGTATACTTGTACCAGTCCCAGGAAATAA
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| Protein seq | MESMRSFLTHLTETEPPGGEHDEQVWTWMKQVRELAQDCSNCIDTYRQHGDLAVRHPSWSRGAGILQRYIYWAPWMVEKLLAQHYAAIWLRELKDRAHDVGQRRLRYGVEVPGKPSSKAAGGAPSSVRSEEASPSTTSATTGAQAPDEEDEDEEEEEQQDQEYDSARANARDALASMETTHFDRSVWINLQALHLHRSWHQISTEAILCYILRECESLKKRGKDHGQVDDRDDQWEAYYYYRWDILYDIHRDFYRQVNPKMEEIEGNITKNSAAEEEQEEKSKGEAAYGNQTEDEIPSTPDGSMSRPKLAPNGGQSKAIQINLYTCTSPRK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0687900 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0687900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0021970 | RBH | 0.084209 | 1.163178 | 1.665257 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0021960 | SBH | 0.000000 | 0.198950 | 0.825519 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0021780 | SBH | 0.397231 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0021280 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0021820 | RBH | 0.000000 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0385800 | SBH | 1.274913 | 1.11071 | 3.104537 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0022350 | RBH | 0.038309 | 0.000000 | 0.321106 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0405800 | SBH | 0.203435 | 0.473961 | 1.660659 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0022170 | RBH | 0.257880 | 0.228424 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0022240 | SBH | 0.032489 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0021880 | SBH | 0.0 | 1.393880 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0018960 | SBH | 0.294761 | 0.0 | 0.933381 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0021640 | SBH | 0.030819 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G021760 | RBH | 0.0 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0022180 | SBH | 0.000000 | 0.909686 | 0.673293 |
