Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0021610 | OGI:11072110 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:27425581-27428132 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gaggtctgcatgtccagcaattcataattccagaccgacaaaattcacaagcacaagcagggaccttttccaacagcagatgttaactggagatgaacggtataatattatactaatccattcaacattgtaagacaggtaattctgttacattgtacttcaactcgatgcttcagaaatgtaaatgcatacaaaacactgacaacaccaaacattttagctgccgctgccacttgcattggatgcaatgtatcacaaatctcttgaatcagctctgtttttaggccatcccgccgctagttgctgtcctgattatctgaaacaaagctgcagatgcacaaaaatgtatggtgttaaaagcgcaataatagcagaagaaacatagcaaggtggcctagagaacatccgaactgtaagttccatatagataggcaagaaagttgcacggctacacaacagaagatcaaaacatgacctacttgcatgcactgaagagctagatttgttggtatagtatacaacagagataaaaataacctagaatttgagttgtaataactaattaagaattcaccaaatcactcataaaacacgcacaatagcagtcttaaatttctagtgacatagccagctctatttcattaggttatcatgaatttgtagcagagtgacactcagcattttaattcctctagtatcaattcaaaacctaagagtgctttgtcatgaagacttaaagctaatgtgatggaattcatttgtcattatcttttgaaagcaaaagaagagacaataataagctatgcatcagcgcattctaaagtaacacagcacaagtgtcagtgaaataaaatcaacagaggataaagataaggttggaaggcatacatgatccaatgaccacaaatatgaagaatccaagcacaagaggtccaactggatagtcgttccccttcttcacagtagtttcaggcactgaacccctcttggtgatattcttctggaactttgcagtcttcctgtcagcaaggcgccttgaagtagtctggtcgtgcaaaacaacccaaccattcagcatacacaaatattcatactcagttttctaactactttacatctgccaggtgtaaaataaatggcagatccatgtactaacaagttggagaccaactcatggtccatcaaagaaagagaagatcacttttttatagaatttataagtagttaatggaccttactatgccaagtcataatccagaaaagtgcaaaatctgtatcacatcatgctctaactgaaccaaatgctgctcagctaccagtttagatattacaattcattactttaaacatcaaatattcactattcttcctatatccgatttatgtctaaaagttgtaaaattaaaataatggaaaccagaacattggttgcaatgcagcttagtgcaaaaaaaaaggtagacataaaagttggcaaaacttaaccttgacctacacctctcctaaaagcacaacctaaaacatgcaacggcggttcagacaccattcagaatattccacaagaagcactttcaactcccaaatagtgtataaaaacctaccatgaatcagataacaagttgcaactacaggtttttgaaacacggttcctttctagaccaagtcaactctgactcagactgactctttggattattttagttgttaaatgtaaaaaagccatattcaatgggtagatgcctccctactttcccagggaacattgttaaaaccacaagtcaaacatggatcacccatattttgctaaagaacctatgcaatttacctcgctctacgtaagaggctaagaccaatccttgatgatactaacatgcctaaccatgctcctaatgattaccactccaaactcaagtacgaaagctattctgttatgtaacctaaaaataatttctaactggagaatcatcgatatcgacactagaatacaagaacatagaagcttataaattttaaattttaagtattaattatgtctgtcagaaacaatcagaactaactactgctctatttttcacaaaggaggatcaattggagaatggaaagaaaatatttgctaatcactactccaatttaagactgattcacaaaaaGaaaaaaaaaactgcctatctcgactacaaatctcaccaaattctgtaaccccagcaatcaaacatcaacagaatacccgaaaaaaccaccagatctggcgaaagcaacacatcaaccgcacggatccgcgaaagccagcatctctttgtaccaaaatttttcctcaactcgacgataaaggcgagaccctttcctcacccagatcccgatccgtacccgcgcccttccaccaacaggagagggagctacagtagtacgcctccaagagaagtgttgagggattcaggctcgcttaccatctccgcgggtcgcgtggcctgccgccgccggtgatctcgccggagaaagagagagagagagagagagagagagagagagttgaagcagcagctgttgaggcg
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| CDS seq | atgactacttcaaggcgccttgctgacaggaagactgcaaagttccagaagaatatcaccaagaggggttcagtgcctgaaactactgtgaagaaggggaacgactatccagttggacctcttgtgcttggattcttcatatttgtggtcattggatcatctttgtttcagataatcaggacagcaactagcggcgggatggcctaa |
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| Protein seq | MTTSRRLADRKTAKFQKNITKRGSVPETTVKKGNDYPVGPLVLGFFIFVVIGSSLFQIIRTATSGGMA |
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| Function | Stress-associated endoplasmic reticulum protein 2 [UniProtKB/Swiss-Prot:Q6TAW2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0021610 | OsLima_11g0021610.01 | Chr11 | 27425581 | 27428132 | - | NAM | ||
| CDS seq | atgactacttcaaggcgccttgctgacaggaagactgcaaagttccagaagaatatcaccaagaggggttcagtgcctgaaactactgtgaagaaggggaacgactatccagttggacctcttgtgcttggattcttcatatttgtggtcattggatcatctttgtttcagataatcaggacagcaactagcggcgggatggcctaa
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| Protein seq | MTTSRRLADRKTAKFQKNITKRGSVPETTVKKGNDYPVGPLVLGFFIFVVIGSSLFQIIRTATSGGMA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.979444 | 0.449014 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0637501 | RBH | 0.804231 | 0.827406 | 30.533283 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g41875 | RBH | 0.590762 | 0.390449 | 8.143149 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0637501 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0021400 | RBH | 1.208541 | 25.002340 | 16.491262 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0021330 | RBH | 0.050942 | 10.947816 | 5.185060 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0021270 | RBH | 2.695089 | 81.480438 | 22.957758 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0020710 | RBH | 0.534008 | 2.766968 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0021240 | RBH | 10.809360 | 35.699879 | 45.116261 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0379900 | SBH | 0.872179 | 8.290015 | 0.9282905 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0021700 | RBH | 0.168963 | 2.680078 | 2.483269 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0399700 | SBH | 0.328556 | 11.522487 | 0.6131185 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0014860 | RBH | 2.407666 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0021730 | RBH | 1.860000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0021340 | RBH | 8.762134 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0020950 | RBH | 0.553991 | 0.0 | 0.452278 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0021100 | RBH | 0.313897 | 16.707167 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G021080 | RBH | 0.312932 | 11.887785 | 11.994258 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0021630 | RBH | 1.248461 | 55.430096 | 24.675093 |
