Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsKeNa_11g0021330 | OGI:11072110 | 14/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr11:26467512-26469991 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | ctggagatgaacggtataatattatactaatccattcaacattgtaagacaggtaattctgttacattgtacttcaactcgatgcttcagaaatgtaaatgcatacaaaacactgacaacaccaaacattttagctgccgctgccacttgcattggatgcaatgtatcacaaatctcttgaatcagctctgtttttaggccatcccgccgctagttgctgtcctgattatctgaaacaaagctgcagatgcacaaaaatgtatggtgttaaaagcgcaataatagcagaagaaacatagcaaggtggcctagagaacatccgaactgtaagttccatatagataggcaagaaagttgcacggctacacaacagaagatcaaaacatgacctacttgcatgcactgaagagctagatttgttggtatagtatacaacagagataaaaataacctagaatttgagttgtaataactaattaagaattcaccaaatcactcataaaacacgcacaatagcagtcttaaatttctagtgacatagccagctctatttcattaggttatcatgaatttgtagcagagtgacactcagcatttcaattcctctagtatcaattcaaaacctaagagtgctttgtcatgaagacttaaagctaatgtgatggaattcatttgtcattatcttttgaaagcaaaagaacagacaataataagctatgcatcagcgcattctaaagtaacacagcacaagtgtcagtgaaataaaatcaacagaggataaagataaggttggaaggcatacatgatccaatgaccacaaatatgaagaatccaagcacaagaggtccaactggatagtcgttccccttcttcacagtagtttcaggcactgaacccctcttggtgatattcttctggaactttgcagtcttcctgtcagcaaggcgccttgaagtagtctggtcgtgcaaaacaacccaaccattcagcatacacaaatattcatactcagttttctaactactttacatctgccaggtgtaaaataaatggcagatccatgtactaacaagttggagaccaactcatggtccatcaaagaaagagaagatcacttttttatagaatttataagtagttaatggaccttactatgccaagtcataatccagaaaagtgcaaaatctgtatcacatcatgctctaactgaaccaaatgctgctcagctaccagtttagatattactattcattactttaaacatcaaatattcactattcttcctatatccgatttatgcctaaaagttgtaaaattaaaataatggaaaccagaacattggttgcaatgcagcttagtgcaaaaaaaaaggtagacataaaagttggcaaaacttaaccttgacctacacctctcctaaaagcacaacctaaaccatgcaacggcggttcagacaccattcagaatattccacaagaagcactttcaactcccaaatagtgtataaaaacctaccatgaatcagataacaagttgcaactacaggtttttgaaacacggttcctttctagaccaagtcaactctgacacagactgactctttggattattttagttgttaaatgtaaaaaagccatattcaatgggtagatgcctccctactttcccagtgaacattgttaaaaccacaagtcaaacatggatcacccatattttgctaaagaacctatgcaatttacctcgctctacgtaagaggctaagaccaatccttgatgatactaacatgcctaaccatgctcctaatgattaccactccaaactcaagtacgaaagttattctgttatgtaacctaaaaataatttctaactggagaatcatcgatatcgacactagaatacaagaacatagaagcttataaattttaaattttaagtattaattatgtctgtcagaaacaatcagaactaactactgctctatttttcacaaaggaaggatcaattggagaatggaaagaaaatatttgctaatcactactccaatttaagactgattcacaaaaagaaaaaaaaaactgcctatctcgactacaaatctcaccaaattctgtaaccccagcaatcaaacatcaacagaatacccgaaaaaaccaccagatctggcgaaagcaacacatcaaccgcacggatccgcgaaagccagcatctctttgtaccaaaatttttcctcaactcgacgataaaggcgagaccctttcctcacccagatcccgatccgtacccgcgcccttccacccaacaggagagggagctacagtagtacgcctccaagagaagtgttgagggattcaggctcgcttaccatctccgcgggtcgcgtggcctgccgccgccggtgatctcgccggagaaagagagagagagagagagagagagagagagagagagagagagagttgaagcagcagctgttgaggcg
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CDS seq | atgactacttcaaggcgccttgctgacaggaagactgcaaagttccagaagaatatcaccaagaggggttcagtgcctgaaactactgtgaagaaggggaacgactatccagttggacctcttgtgcttggattcttcatatttgtggtcattggatcatctttgtttcagataatcaggacagcaactagcggcgggatggcctaa |
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Protein seq | MTTSRRLADRKTAKFQKNITKRGSVPETTVKKGNDYPVGPLVLGFFIFVVIGSSLFQIIRTATSGGMA |
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Function | Stress-associated endoplasmic reticulum protein 2 [UniProtKB/Swiss-Prot:Q6TAW2] |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsKeNa_11g0021330 | OsKeNa_11g0021330.01 | Chr11 | 26467513 | 26469991 | - | NAM | ||
CDS seq | atgactacttcaaggcgccttgctgacaggaagactgcaaagttccagaagaatatcaccaagaggggttcagtgcctgaaactactgtgaagaaggggaacgactatccagttggacctcttgtgcttggattcttcatatttgtggtcattggatcatctttgtttcagataatcaggacagcaactagcggcgggatggcctaa
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Protein seq | MTTSRRLADRKTAKFQKNITKRGSVPETTVKKGNDYPVGPLVLGFFIFVVIGSSLFQIIRTATSGGMA |
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsKeNa_11g0021330 | OsKeNa_11g0021330.02 | Chr11 | 26467512 | 26469966 | - | IsoSeq | ||
CDS seq | ctctctctctctctctctctctctctctctctctctctctttctccggcgagatcaccggcggcggcaggccacgcgacccgcggagatggtaagcgagcctgaatccctcaacacttctcttggaggcgtacta |
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Protein seq | LSLSLSLSLSLSLFLRRDHRRRQATRPAEMVSEPESLNTSLGGVL |
Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.050942 | 10.947816 | 5.185060 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0637501 | RBH | 0.804231 | 0.827406 | 30.533283 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g41875 | RBH | 0.590762 | 0.390449 | 8.143149 |
Nipponbare | IRGSP 1.0 | RAP-db | Os11g0637501 | RBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0021400 | RBH | 1.208541 | 25.002340 | 16.491262 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0015250 | RBH | 0.822814 | 17.276745 | 18.953064 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0021270 | RBH | 2.695089 | 81.480438 | 22.957758 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0020710 | RBH | 0.534008 | 2.766968 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0021240 | RBH | 10.809360 | 35.699879 | 45.116261 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0379900 | SBH | 0.872179 | 8.290015 | 0.9282905 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0021700 | RBH | 0.168963 | 2.680078 | 2.483269 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0399700 | SBH | 0.328556 | 11.522487 | 0.6131185 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0021610 | RBH | 0.979444 | 0.449014 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0021730 | RBH | 1.860000 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0021340 | RBH | 8.762134 | 0.000000 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0020950 | RBH | 0.553991 | 0.0 | 0.452278 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0021100 | RBH | 0.313897 | 16.707167 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G021080 | RBH | 0.312932 | 11.887785 | 11.994258 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0021630 | RBH | 1.248461 | 55.430096 | 24.675093 |