Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0021510 | OGI:01039680 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:27255841-27257731 | ||||||||
| Gene Symbol | MSL02, OsMSL02, MSL2, - | ||||||||||
| DNA seq | ctaccaccatgtagcaatctgcaccaaccttctctggaaaggaaaaaattgacagtattaggctagatagcacacgtgtcagtaataaacatatgcacaaaatgattatttacaaaatgattatttgaaagtgtttatattagctttttaattaaaatccccttgcaacgcacgggtgttgtgcgacttaatattaatatactagtacgcatacaaaacttaattcatgaataaataattaaagagcatccaaaagcaatattcatgtaatgtaagaaacttgatgcatattaccttaaTtagaaattgcgatttttagatgcgaacctattgatgatggtatcaatgtcaatcttaatgcccgatagatgcatacttgaaaattggactcgcaatcttaatgcccgatcggtgcaatcttgaagtagcggtcgaacacgtaaatttgaaagctacgaatggaaaaaaaaatggactcataatttttttttaaaaaattaacagtagcggtcgaagccattaattagaaagctacaaataaaagtaccagattaattcaaataaatcatactaccaattactgtataagttgaactagctagcaaagcacagtatagtttctatgattgcatatccctgatttgtcaactattccttcacttatttatcaacatcctccattccaataataagtttatttatgtgtttttttccaatgtttaactgtctgtcttattcgattatttttgtaattagtatttttgttgttattagatgataaaacagaaatagtactttatacatgatttattttttaatttttttataatttttcaaataagacaaacgatcgatcgttggacAaaaaaaacccataaatgaatttattttagcacgagggggtgtagcatatcaaagctgattgattcaagtgtgatagtggtaggcattaatattggcgacaatggtgtaccgctgtctctgtgcgcagtagctagctaggaaaaatactgtaaattgctgttcattaattaacgtgatcacagcttcacgccaacctgtgtggacgtacatcttggtccctgcaggaaattgcaattaagatgaaattttccatggtccatctacaaataaaattcagatgcagtagtagtactattgtggctgtatttatgaagggttagaaggtaaaattagcttaaaatgatttcggcacagaagcttaacatgaaattagcttaaaatatgaaattagcttaaaatgatcagttgaacacagaagcttgatgggtatttttgctctttaagaacaactaacaaagagtacaatatgttggacacagaagcttgatgggctcatttttatgataatcatttatcagttgaatatctaacaaagagttcaatgaatcacttctagacattgttaaaatatggtataaaagggatccaggtacaacagtatgggatttacagattcacaatgcttaatatcaactacaaaattatctagattcacaatgcctaatatcaactacaaaatcagcaatgaaacaaggatttaccatgatccaggagatgagggatcaccgccggccgcatcaaaccaaggttgagacgatgcatgaggaccaattgagctggtgaagtcacctccgacagaaccatcaatggagaaagccgggacggtcgtcgatgccgctactgacccgcgaccgcgtccgcgagaacggggcggcggtggtagcctgacagcgtgaccaaaagaaccccgaccgaatgagggagccgccgccgccgccccgacacctagggttcggcctggggccgtcgccgccgcatccaatgtcctcgatccattcctaccccaagttgcgccgggcGtggacat
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| CDS seq | atgtccaCgcccggcgcaacttggggtaggaatggatcgaggacattggatgcggcggcgacggccccaggccgaaccctaggtgtcggggcggcggcggcggctccctcattcggtcggggttcttttggtcacgctgtcaggctaccaccgccgccccgttctcgcggacgcggtcgcgggtcagtagcggcatcgacgaccgtcccggctttctccattgatggttctgtcggaggtgacttcaccagctcaattggtcctcatgcatcgtctcaaccttggtttgatgcggccggcggtgatccctcatctcctggatcatgggaccaagatagaaggttggtgcagattgctacatggtggtag |
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| Protein seq | MSTPGATWGRNGSRTLDAAATAPGRTLGVGAAAAAPSFGRGSFGHAVRLPPPPRSRGRGRGSVAASTTVPAFSIDGSVGGDFTSSIGPHASSQPWFDAAGGDPSSPGSWDQDRRLVQIATWW |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0021510 | OsLima_11g0021510.01 | Chr11 | 27255841 | 27257731 | - | NAM | ||
| CDS seq | atgtccaCgcccggcgcaacttggggtaggaatggatcgaggacattggatgcggcggcgacggccccaggccgaaccctaggtgtcggggcggcggcggcggctccctcattcggtcggggttcttttggtcacgctgtcaggctaccaccgccgccccgttctcgcggacgcggtcgcgggtcagtagcggcatcgacgaccgtcccggctttctccattgatggttctgtcggaggtgacttcaccagctcaattggtcctcatgcatcgtctcaaccttggtttgatgcggccggcggtgatccctcatctcctggatcatgggaccaagatagaaggttggtgcagattgctacatggtggtag
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| Protein seq | MSTPGATWGRNGSRTLDAAATAPGRTLGVGAAAAAPSFGRGSFGHAVRLPPPPRSRGRGRGSVAASTTVPAFSIDGSVGGDFTSSIGPHASSQPWFDAAGGDPSSPGSWDQDRRLVQIATWW |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0635000 | RBH | 1.420735 | 0.983842 | 0.209596 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g41670 | RBH | 0.962674 | 0.697424 | 0.051754 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0635000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0021300 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0013570 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0021180 | RBH | 0.391963 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0020610 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0005030 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0378000 | RBH | 0.0088835 | 0 | 0.0232375 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0005110 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0064900 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0005060 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0005140 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0005150 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0005150 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0005130 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G005190 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0021530 | RBH | 0.0 | 0.0 | 0.0 |
