Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_11g0013570 | OGI:01039680 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr11:16966745-16968617 | ||||||||
| Gene Symbol | MSL02, OsMSL02, MSL2, - | ||||||||||
| DNA seq | atgtccatgcccggcgcagcttggagtaggaatggatcgaggacattggatgcggtggcgacggccccaggccgaaccctaggtgtcggggcggcagcggcggctccctcattcggtcggggttcttttggtcacgctgtcgggctaccaccgccgccccgttcttgcggacgcggtcgcgggtcagtagcggcagcgacgaccgtcccggctttctccattgatggttctgtcggaggtgacttcaccagctcaattggtcctcatgcatcgtctcaaccttggtttgatgcggccggcggtgatccctcatctcctggatcatggtaaatccttgtttcattgctgattttgaagttgatattaggcattgtgaatctagataattttgtagttgatattaagcattgtgagtctgtaaatcccatactgttgtacctggatcccttttttaccatattttaacaatgtccagaagtgattcattgaactctttgttagatattcaactgataaatgattatcataaaaatgagcccatcaagcttctgtatccaacatattgtactctttgttagttgttcttagagtaaaaatacccatcaagcttctgtgtccaactgatcattttaagctaatttcatattttaagctaatttcatgttaagcttctgttccgaaatcattttaagctaattttaccttctaacccttcataaatatagccacaatagaactactactgcatctgaattttttttgtagatggaccatggaaaatttcatgttaattgcaatttcctgcagggaccaagatgtacgtccacctggtggtttcatgagttattttggaaatgaagcacagaactctcatttggttggtgcagttattcacatgagtcctctgaatcaggcacacaatggtagttcaccgcccgaagtggaaatattacatggcaatgacagtgttagaaccgagaagaggatcatgtggactccgaacgaggatgttagagtgatgagcgcttggttagaacattcaaccgactctacctgtggtgcggataagggtggtgtccaatattggggtgaggttgtcgaaacgtacaacaaaactacccctccacttcgaagaagaaatgcgaagcaatgcaaggatagatggcacaagattaacaaatggacagacctctttgaatgtgcttacgctaaggctcgtagagtatttacaagtggatattcggctgaaatgtggcttgatgcagcacacaagttctatgtggatgacaacaaagaatgcaaagacgtggttggaccttatatgctgatagaggtttggaaaatttgccgagatgtggcaaagtggaaaacatataatgaaaacctgaagaatgcacgtaaaaggaaagcattccatctggaaggagaatctgaggaaaatgaggacacttgtgatgagatgccacaacgaccaattggtcagaaggcagctaaaaaggcagctctagctgctaaaaatggcaagttaaagggttccagcagtagtgatgatggtcactcaaaggattctcctattgagctagacaaatttgatagatatagtaaatttcaggaggcaaacaatgagaagcgtatgaagctattggacaggcaagagaagatagcttctgagaagctagaggccacaaaaattgcccaccttacagcacaagagtacaaagaaggaaagaagcttgataaagagacaaagatgatggagacttataacaaccttgtttcacaggatacaagttcaatgtccaatgaggaaaaggcacagcgagctatgatgatgaagtgtcttatgaaggccctttttcctgaaactgcttga
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| CDS seq | atgtccatgcccggcgcagcttggagtaggaatggatcgaggacattggatgcggtggcgacggccccaggccgaaccctaggtgtcggggcggcagcggcggctccctcattcggtcggggttcttttggtcacgctgtcgggctaccaccgccgccccgttcttgcggacgcggtcgcgggtcagtagcggcagcgacgaccgtcccggctttctccattgatggttctgtcggaggtgacttcaccagctcaattggtcctcatgcatcgtctcaaccttggtttgatgcggccggcggtgatccctcatctcctggatcatgggaccaagatgtacgtccacctggtggtttcatgagttattttggaaatgaagcacagaactctcatttggttggtgcagttattcacatgagtcctctgaatcaggcacacaatgcacacaagttctatgtggatgacaacaaagaatgcaaagacgtggttggaccttatatgctgatagaggtttggaaaatttgccgagatgtggcaaagtggaaaacatataatgaaaacctgaagaatgcacgtaaaaggaaagcattccatctggaaggagaatctgaggaaaatgaggacacttgtgatgagatgccacaacgaccaattggtcagaaggcagctaaaaaggcagctctagctgctaaaaatggcaagttaaagggttccagcagtagtgatgatggtcactcaaaggattctcctattgagctagacaaatttgatagatatagtaaatttcaggaggcaaacaatgagaagcgtatgaagctattggacaggcaagagaagatagcttctgagaagctagaggccacaaaaattgcccaccttacagcacaagagtacaaagaaggaaagaagcttgataaagagacaaagatgatggagacttataacaaccttgtttcacaggatacaagttcaatgtccaatgaggaaaaggcacagcgagctatgatgatgaagtgtcttatgaaggccctttttcctgaaactgcttga
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| Protein seq | MSMPGAAWSRNGSRTLDAVATAPGRTLGVGAAAAAPSFGRGSFGHAVGLPPPPRSCGRGRGSVAAATTVPAFSIDGSVGGDFTSSIGPHASSQPWFDAAGGDPSSPGSWDQDVRPPGGFMSYFGNEAQNSHLVGAVIHMSPLNQAHNAHKFYVDDNKECKDVVGPYMLIEVWKICRDVAKWKTYNENLKNARKRKAFHLEGESEENEDTCDEMPQRPIGQKAAKKAALAAKNGKLKGSSSSDDGHSKDSPIELDKFDRYSKFQEANNEKRMKLLDRQEKIASEKLEATKIAHLTAQEYKEGKKLDKETKMMETYNNLVSQDTSSMSNEEKAQRAMMMKCLMKALFPETA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_11g0013570 | OsKeNa_11g0013570.01 | Chr11 | 16966745 | 16968617 | + | NAM | ||
| CDS seq | atgtccatgcccggcgcagcttggagtaggaatggatcgaggacattggatgcggtggcgacggccccaggccgaaccctaggtgtcggggcggcagcggcggctccctcattcggtcggggttcttttggtcacgctgtcgggctaccaccgccgccccgttcttgcggacgcggtcgcgggtcagtagcggcagcgacgaccgtcccggctttctccattgatggttctgtcggaggtgacttcaccagctcaattggtcctcatgcatcgtctcaaccttggtttgatgcggccggcggtgatccctcatctcctggatcatgggaccaagatgtacgtccacctggtggtttcatgagttattttggaaatgaagcacagaactctcatttggttggtgcagttattcacatgagtcctctgaatcaggcacacaatgcacacaagttctatgtggatgacaacaaagaatgcaaagacgtggttggaccttatatgctgatagaggtttggaaaatttgccgagatgtggcaaagtggaaaacatataatgaaaacctgaagaatgcacgtaaaaggaaagcattccatctggaaggagaatctgaggaaaatgaggacacttgtgatgagatgccacaacgaccaattggtcagaaggcagctaaaaaggcagctctagctgctaaaaatggcaagttaaagggttccagcagtagtgatgatggtcactcaaaggattctcctattgagctagacaaatttgatagatatagtaaatttcaggaggcaaacaatgagaagcgtatgaagctattggacaggcaagagaagatagcttctgagaagctagaggccacaaaaattgcccaccttacagcacaagagtacaaagaaggaaagaagcttgataaagagacaaagatgatggagacttataacaaccttgtttcacaggatacaagttcaatgtccaatgaggaaaaggcacagcgagctatgatgatgaagtgtcttatgaaggccctttttcctgaaactgcttga
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| Protein seq | MSMPGAAWSRNGSRTLDAVATAPGRTLGVGAAAAAPSFGRGSFGHAVGLPPPPRSCGRGRGSVAAATTVPAFSIDGSVGGDFTSSIGPHASSQPWFDAAGGDPSSPGSWDQDVRPPGGFMSYFGNEAQNSHLVGAVIHMSPLNQAHNAHKFYVDDNKECKDVVGPYMLIEVWKICRDVAKWKTYNENLKNARKRKAFHLEGESEENEDTCDEMPQRPIGQKAAKKAALAAKNGKLKGSSSSDDGHSKDSPIELDKFDRYSKFQEANNEKRMKLLDRQEKIASEKLEATKIAHLTAQEYKEGKKLDKETKMMETYNNLVSQDTSSMSNEEKAQRAMMMKCLMKALFPETA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0635000 | RBH | 1.420735 | 0.983842 | 0.209596 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0635000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0005240 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0017130 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0021180 | RBH | 0.391963 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0005110 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0013590 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0249000 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0013570 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0264200 | RBH | 0.009669 | 0 | 0.007222 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0013670 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0013740 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0013370 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0005150 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0005130 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G013380 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0013570 | RBH | 0.0 | 0.0 | 0.0 |
