Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0020560 | OGI:11069030 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:25969478-25973093 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | agaacgtttctcacatttttatcaagcagaaatgaagctgcagacgttggaatgaatctaggacaaaagagattgttcttataacttgacaagcaaaaatattttgataggagttgatggatattgacaaaaaatcaaggatagaaatatgtacaaacagaagtaggggtgaattgaaggcaacatagaataagtaaaccgaaaatttctacgcttataaagtagcagctgagcagatgggaagaatcaaactcgcatgtcccctgccatggccaatagtagagtagctaatgcgaagtactttgcctttcaatatacaggtttgtttgcttcgtcccttccttcgttattaaccaagtttcccaatgtcagaatgctaagtatagggGAgtttggatggttgtctgcagcattttttatggcatcttccacagctttcacttgcgaagcattggcaccttcactatttattctgacgtcaaatttctttaggtatttgaggttttcaatgctgatagagaacccgtacttctcagcagctaagacattgaatgcaaggaacagcctttcaacctttggcatagaccctggctcaaaggttaggtttgcccaatcagaatgcaaatgaaactcccgtagaaccaagaatccgttgctacggatggcaaggtgttctgttggcacaactcttgatgacagagatagatggataagtgaaggtagacttaagagcaactgcaggtctttattctttacttccttgacatcaatgcaaacataggagaggtttggaagtgatctgaaccactttggaatccttctaagataacagtccttgttgattttgaacttcttcagttcctgtatagggtgatataggtgatgtaagaggtccacagaactgtcagtcccatgtatagtcagggattggagcttgttcaatctgtaaagtgatgatgcaaatcgttcatatataccgatattatcagagtccacgctgggagaccaccatattacaagctctgttagattggacagattaccaagctcttctacaacagcaattttgttccttagaacatcaaactgtgacacaaggtgaagtgttttcatgctccctataccttctggcaacctcaacatgttgtcaataagtagaaatgctagcttatgaagctgcacgacattggcttgcaattctagaaccccagtacctcgaagatccagtgtctccaagaattttagtgccaaaatttcatctgggagctcactgatgcgggtgtgccggatgttcaagtaccttagctgccagagactaccaatctccttgaaatgttggttgcccaaattctggcaatcttccaagtctaacacccgcaaaagactgaaattctgaagagaaggtattgatcccaaactgccaaagacagttagtgaccgcatatgagattgagattgggacactaaatctgggaaatgttgtttctcattgatattgttgagggctaagcggcgaattctgttatgtgatatagatgcaggttcctgatcacctaaagatattgcaaagttctcttcagttgacatggatacgatgaagtcacgcaccaagtcatggactcgacaatcctctggttgaccatcatagccaaagtgaactggttggatcatgcttctattgataagctcgttgaagtaactctctcctaattcctttggatttcttccaggttcttcaactatgaatccttcagctatccatctcatcactaaacgatcacgggtaattacatgatcctctggaaaaacacttaggtacaaaaagcatgacttgagatgggaaggaaggtcatagtaactgaggtataatatgtgccgcatattttcaagtgttgtactacttcctgcaaaagatataccaacagactcccccaccttcaaccattgctccttcgtatgtcctttcgtggccaataaactagcaatagtgattatggcaagtggcacaccagcacatttcttcaagatattatcagatacttctaccaagtctggagggcaactatcctcagacccatagattcttgtgaggaacagccttctggagtcatgcatgctgagaggcataatcttataaataacatcattccaatgagagcagcatgattgagcaacccttagaactcgagttgttgtgattatcctactgcataaactattcataggcagagcaagcttaatgatttcccatgattccaagctccatatatcatcaagaacgattaagtacctgttatgccatttttgtaggtatgttaacagcattgttacttcaacgagaagagcaagtcgattcaagatgaaacaaaaattgaccataagccaattaaaaggtatatatgtaaagtacatcgtttcaaataaaaatctaagcaacaatatatgttgtagtctaggagatatctatgggtgtctcaactAaaaaaaaagcataatcattccttaaaacaaaaactaagcagaagcatgtcataaggagaaatacgtatactgattgaaagggtagaagtaaaatttcattatggcaatatgcaaatttcatgcaaaatatagtatatgacaattgtgacaaagctagaagatgaggagaaaaggcaaaatcattatggtttaccgtcgattttgcagggattctctgatcttgttgacgagatccctctcatcccatttgccttcctcgtcgatagtatcctcctgaatttgaacttgacgaagtagctcagtgagaatcccccgagtattgtagctttgggttacagacacccaagcttggcagtcaaattgtggcccgattgcgccaaagacctgtttagcaagagtcgtcttccccaggcctccaaacccaaaaatggagactaccttgagccgcgctgccgactccgaagactcttcctcctcctctttgagaaagtcgataagctcatcccgcgggccgttcataccttcaaatctggaggcctctgcgaagagcgcttggatccgaggatcgacggaggcgccgccgtcaatcttgtcgcttgcgggcggcgctgctgccggatctgcgcggaggcggagcctgttgcgctgcttgctcacctgggagacccggcccttgagctcctccaactccctgtcgattcggcggctggtcctggccctgttcagcaagctcctggtccgcgccatcaaccccttgccgcgccgcggcttgaaccccgggttgcttccggcgtagtccaccatgagcttgtcgaagtagtcctccatgtcgtacgaaagctcccggagctccgtcatccacaccttggtctgaggatcgtccacctccggcgccttggggaggaactggcggatggcctccagctccgcttgcagggatgtgatccgccgtttgacctccctgagttgcgccgattcattctccaccatgacctgcatcttcgagagcaggtgtcccatgaccgcggacaaagccgaatccgccatgatcgacgatcgatcgccgcccggcttgaggctatggaatggagttgacaagaaatttggggatcgatatctaccagtagaacaacca
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| CDS seq | atggcggattcggctttgtccgcggtcatgggacacctgctctcgaagatgcaggtcatggtggagaatgaatcggcgcaactcagggaggtcaaacggcggatcacatccctgcaagcggagctggaggccatccgccagttcctccccaaggcgccggaggtggacgatcctcagaccaaggtgtggatgacggagctccgggagctttcgtacgacatggaggactacttcgacaagctcatggtggactacgccggaagcaacccggggttcaagccgcggcgcggcaaggggttgatggcgcggaccaggagcttgctgaacagggccaggaccagccgccgaatcgacagggagttggaggagctcaagggccgggtctcccaggtgagcaagcagcgcaacaggctccgcctccgcgcagatccggcagcagcgccgcccgcaagcgacaagattgacggcggcgcctccgtcgatcctcggatccaagcgctcttcgcagaggcctccagatttgaaggtatgaacggcccgcgggatgagcttatcgactttctcaaagaggaggaggaagagtcttcggagtcggcagcgcggctcaaggtagtctccatttttgggtttggaggcctggggaagacgactcttgctaaacaggtctttggcgcaatcgggccacaatttgactgccaagcttgggtgtctgtaacccaaagctacaatactcgggggattctcactgagctacttcgtcaagttcaaattcaggaggatactatcgacgaggaaggcaaatgggatgagagggatctcgtcaacaagatcagagaatccctgcaaaatcgacggtacttaatcgttcttgatgatatatggagcttggaatcatgggaaatcattaagcttgctctgcctatgaatagtttatgcagtaggataatcacaacaactcgagttctaagggttgctcaatcatgctgctctcattggaatgatgttatttataagattatgcctctcagcatgcatgactccagaaggctgttcctcacaagaatctatgggtctgaggatagttgccctccagacttggtagaagtatctgataatatcttgaagaaatgtgctggtgtgccacttgccataatcactattgctagtttattggccacgaaaggacatacgaaggagcaatggttgaaggtgggggagtctgttggtatatcttttgcaggaagtagtacaacacttgaaaatatgcggcacatattatacctcagttactatgaccttccttcccatctcaagtcatgctttttgtacctaagtgtttttccagaggatcatgtaattacccgtgatcgtttagtgatgagatggatagctgaaggattcatagttgaagaacctggaagaaatccaaaggaattaggagagagttacttcaacgagcttatcaatagaagcatgatccaaccagttcactttggctatgatggtcaaccagaggattgtcgagtccatgacttggtgcgtgacttcatcgtatccatgtcaactgaagagaactttgcaatatctttaggtgatcaggaacctgcatctatatcacataacagaattcgccgcttagccctcaacaatatcaatgagaaacaacatttcccagatttagtgtcccaatctcaatctcatatgcggtcactaactgtctttggcagtttgggatcaataccttctcttcagaatttcagtcttttgcgggtgttagacttggaagattgccagaatttgggcaaccaacatttcaaggagattggtagtctctggcagctaaggtacttgaacatccggcacacccgcatcagtgagctcccagatgaaattttggcactaaaattcttggagacactggatcttcgaggtactggggttctagaattgcaagccaatgtcgtgcagcttcataagctagcatttctacttattgacaacatgttgaggttgccagaaggtatagggagcatgaaaacacttcaccttgtgtcacagtttgatgttctaaggaacaaaattgctgttgtagaagagcttggtaatctgtccaatctaacagagcttgtaatatggtggtctcccagcgtggactctgataatatcggtatatatgaacgatttgcatcatcactttacagattgaacaagctccaatccctgactatacatgggactgacagttctgtggacctcttacatcacctatatcaccctatacaggaactgaagaagttcaaaatcaacaaggactgttatcttagaaggattccaaagtggttcagatcacttccaaacctctcctatgtttgcattgatgtcaaggaagtaaagaataaagacctgcagttgctcttaagtctaccttcacttatccatctatctctgtcatcaagagttgtgccaacagaacaccttgccatccgtagcaacggattcttggttctacgggagtttcatttgcattctgattgggcaaacctaacctttgagccagggtctatgccaaaggttgaaaggctgttccttgcattcaatgtcttagctgctgagaagtacgggttctctatcagcattgaaaacctcaaatacctaaagaaatttgacgtcagaataaatagtgaaggtgccaatgcttcgcaagtgaaagctgtggaagatgccataaaaaatgctgcagacaaccatccaaacTCccctatacttagcattctgacattgggaaacttggttaataacgaaggaagggacgaagcaaacaaacctgtatattga
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| Protein seq | MADSALSAVMGHLLSKMQVMVENESAQLREVKRRITSLQAELEAIRQFLPKAPEVDDPQTKVWMTELRELSYDMEDYFDKLMVDYAGSNPGFKPRRGKGLMARTRSLLNRARTSRRIDRELEELKGRVSQVSKQRNRLRLRADPAAAPPASDKIDGGASVDPRIQALFAEASRFEGMNGPRDELIDFLKEEEEESSESAARLKVVSIFGFGGLGKTTLAKQVFGAIGPQFDCQAWVSVTQSYNTRGILTELLRQVQIQEDTIDEEGKWDERDLVNKIRESLQNRRYLIVLDDIWSLESWEIIKLALPMNSLCSRIITTTRVLRVAQSCCSHWNDVIYKIMPLSMHDSRRLFLTRIYGSEDSCPPDLVEVSDNILKKCAGVPLAIITIASLLATKGHTKEQWLKVGESVGISFAGSSTTLENMRHILYLSYYDLPSHLKSCFLYLSVFPEDHVITRDRLVMRWIAEGFIVEEPGRNPKELGESYFNELINRSMIQPVHFGYDGQPEDCRVHDLVRDFIVSMSTEENFAISLGDQEPASISHNRIRRLALNNINEKQHFPDLVSQSQSHMRSLTVFGSLGSIPSLQNFSLLRVLDLEDCQNLGNQHFKEIGSLWQLRYLNIRHTRISELPDEILALKFLETLDLRGTGVLELQANVVQLHKLAFLLIDNMLRLPEGIGSMKTLHLVSQFDVLRNKIAVVEELGNLSNLTELVIWWSPSVDSDNIGIYERFASSLYRLNKLQSLTIHGTDSSVDLLHHLYHPIQELKKFKINKDCYLRRIPKWFRSLPNLSYVCIDVKEVKNKDLQLLLSLPSLIHLSLSSRVVPTEHLAIRSNGFLVLREFHLHSDWANLTFEPGSMPKVERLFLAFNVLAAEKYGFSISIENLKYLKKFDVRINSEGANASQVKAVEDAIKNAADNHPNSPILSILTLGNLVNNEGRDEANKPVY |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:Q2R8L1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0020560 | OsLima_11g0020560.01 | Chr11 | 25969478 | 25973093 | - | NAM | ||
| CDS seq | atggcggattcggctttgtccgcggtcatgggacacctgctctcgaagatgcaggtcatggtggagaatgaatcggcgcaactcagggaggtcaaacggcggatcacatccctgcaagcggagctggaggccatccgccagttcctccccaaggcgccggaggtggacgatcctcagaccaaggtgtggatgacggagctccgggagctttcgtacgacatggaggactacttcgacaagctcatggtggactacgccggaagcaacccggggttcaagccgcggcgcggcaaggggttgatggcgcggaccaggagcttgctgaacagggccaggaccagccgccgaatcgacagggagttggaggagctcaagggccgggtctcccaggtgagcaagcagcgcaacaggctccgcctccgcgcagatccggcagcagcgccgcccgcaagcgacaagattgacggcggcgcctccgtcgatcctcggatccaagcgctcttcgcagaggcctccagatttgaaggtatgaacggcccgcgggatgagcttatcgactttctcaaagaggaggaggaagagtcttcggagtcggcagcgcggctcaaggtagtctccatttttgggtttggaggcctggggaagacgactcttgctaaacaggtctttggcgcaatcgggccacaatttgactgccaagcttgggtgtctgtaacccaaagctacaatactcgggggattctcactgagctacttcgtcaagttcaaattcaggaggatactatcgacgaggaaggcaaatgggatgagagggatctcgtcaacaagatcagagaatccctgcaaaatcgacggtacttaatcgttcttgatgatatatggagcttggaatcatgggaaatcattaagcttgctctgcctatgaatagtttatgcagtaggataatcacaacaactcgagttctaagggttgctcaatcatgctgctctcattggaatgatgttatttataagattatgcctctcagcatgcatgactccagaaggctgttcctcacaagaatctatgggtctgaggatagttgccctccagacttggtagaagtatctgataatatcttgaagaaatgtgctggtgtgccacttgccataatcactattgctagtttattggccacgaaaggacatacgaaggagcaatggttgaaggtgggggagtctgttggtatatcttttgcaggaagtagtacaacacttgaaaatatgcggcacatattatacctcagttactatgaccttccttcccatctcaagtcatgctttttgtacctaagtgtttttccagaggatcatgtaattacccgtgatcgtttagtgatgagatggatagctgaaggattcatagttgaagaacctggaagaaatccaaaggaattaggagagagttacttcaacgagcttatcaatagaagcatgatccaaccagttcactttggctatgatggtcaaccagaggattgtcgagtccatgacttggtgcgtgacttcatcgtatccatgtcaactgaagagaactttgcaatatctttaggtgatcaggaacctgcatctatatcacataacagaattcgccgcttagccctcaacaatatcaatgagaaacaacatttcccagatttagtgtcccaatctcaatctcatatgcggtcactaactgtctttggcagtttgggatcaataccttctcttcagaatttcagtcttttgcgggtgttagacttggaagattgccagaatttgggcaaccaacatttcaaggagattggtagtctctggcagctaaggtacttgaacatccggcacacccgcatcagtgagctcccagatgaaattttggcactaaaattcttggagacactggatcttcgaggtactggggttctagaattgcaagccaatgtcgtgcagcttcataagctagcatttctacttattgacaacatgttgaggttgccagaaggtatagggagcatgaaaacacttcaccttgtgtcacagtttgatgttctaaggaacaaaattgctgttgtagaagagcttggtaatctgtccaatctaacagagcttgtaatatggtggtctcccagcgtggactctgataatatcggtatatatgaacgatttgcatcatcactttacagattgaacaagctccaatccctgactatacatgggactgacagttctgtggacctcttacatcacctatatcaccctatacaggaactgaagaagttcaaaatcaacaaggactgttatcttagaaggattccaaagtggttcagatcacttccaaacctctcctatgtttgcattgatgtcaaggaagtaaagaataaagacctgcagttgctcttaagtctaccttcacttatccatctatctctgtcatcaagagttgtgccaacagaacaccttgccatccgtagcaacggattcttggttctacgggagtttcatttgcattctgattgggcaaacctaacctttgagccagggtctatgccaaaggttgaaaggctgttccttgcattcaatgtcttagctgctgagaagtacgggttctctatcagcattgaaaacctcaaatacctaaagaaatttgacgtcagaataaatagtgaaggtgccaatgcttcgcaagtgaaagctgtggaagatgccataaaaaatgctgcagacaaccatccaaacTCccctatacttagcattctgacattgggaaacttggttaataacgaaggaagggacgaagcaaacaaacctgtatattga
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| Protein seq | MADSALSAVMGHLLSKMQVMVENESAQLREVKRRITSLQAELEAIRQFLPKAPEVDDPQTKVWMTELRELSYDMEDYFDKLMVDYAGSNPGFKPRRGKGLMARTRSLLNRARTSRRIDRELEELKGRVSQVSKQRNRLRLRADPAAAPPASDKIDGGASVDPRIQALFAEASRFEGMNGPRDELIDFLKEEEEESSESAARLKVVSIFGFGGLGKTTLAKQVFGAIGPQFDCQAWVSVTQSYNTRGILTELLRQVQIQEDTIDEEGKWDERDLVNKIRESLQNRRYLIVLDDIWSLESWEIIKLALPMNSLCSRIITTTRVLRVAQSCCSHWNDVIYKIMPLSMHDSRRLFLTRIYGSEDSCPPDLVEVSDNILKKCAGVPLAIITIASLLATKGHTKEQWLKVGESVGISFAGSSTTLENMRHILYLSYYDLPSHLKSCFLYLSVFPEDHVITRDRLVMRWIAEGFIVEEPGRNPKELGESYFNELINRSMIQPVHFGYDGQPEDCRVHDLVRDFIVSMSTEENFAISLGDQEPASISHNRIRRLALNNINEKQHFPDLVSQSQSHMRSLTVFGSLGSIPSLQNFSLLRVLDLEDCQNLGNQHFKEIGSLWQLRYLNIRHTRISELPDEILALKFLETLDLRGTGVLELQANVVQLHKLAFLLIDNMLRLPEGIGSMKTLHLVSQFDVLRNKIAVVEELGNLSNLTELVIWWSPSVDSDNIGIYERFASSLYRLNKLQSLTIHGTDSSVDLLHHLYHPIQELKKFKINKDCYLRRIPKWFRSLPNLSYVCIDVKEVKNKDLQLLLSLPSLIHLSLSSRVVPTEHLAIRSNGFLVLREFHLHSDWANLTFEPGSMPKVERLFLAFNVLAAEKYGFSISIENLKYLKKFDVRINSEGANASQVKAVEDAIKNAADNHPNSPILSILTLGNLVNNEGRDEANKPVY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.371077 | 0.319563 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0629550 | SBH | 1.040273 | 0.545325 | 0.985531 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g41170 | SBH | 0.472281 | 0.314193 | 0.331847 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0629550 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0017100 | SBH | 0.067945 | 1.407796 | 0.567068 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0020420 | RBH | 0.494679 | 5.150440 | 2.032849 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0020210 | RBH | 2.072987 | 12.964246 | 6.469787 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0019760 | RBH | 0.317942 | 0.425438 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0020270 | RBH | 4.232135 | 14.141755 | 11.280486 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0361500 | RBH | 0.004226 | 0.231944 | 0.016073 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0020750 | RBH | 0.337773 | 0.932421 | 1.350488 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0378800 | RBH | 7.72216 | 16.8049975 | 14.262526 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0020030 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0020710 | RBH | 1.113080 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0020210 | RBH | 4.664815 | 58.803665 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0020010 | RBH | 0.956146 | 0.0 | 1.243245 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0020120 | RBH | 0.075574 | 2.999010 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G020120 | RBH | 0.166791 | 7.239576 | 1.673717 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0020500 | RBH | 0.278330 | 13.526529 | 5.388376 |
