Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0019420 | OGI:11066880 | 1/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:24820553-24821713 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggctattttgtcaggtaaacattttgagtacttttttttttttcttaaatctgttttatttgtattttctccacacactattatgcaattgtacagttgaattattcaggagtatgatgaactgtttatgttctgtcagatggaacaaagcagctgaatgggaatcaagctatccaaaccatgattttgagtggaagcacatcgctgaaccggtcatgcaagtttacaccgaaacaactgatgggtcctccatagagccaaaggaaagtgctctattatggcattatctggatgcagaccatgactttggttcctgccaagcaaaggaactactgggtcatcttgaaagggtgctatcaaatgaacctgttgttgtgaagtgtggtcattacattgtagaagtcaaaccacaggtctataccatttgaatttattactacattttttcactttcaactcattatgtccagctcacactaaatgaaatacattacttgtgcagggagttagcaagggtcttgttgtggacaaggtaattcacagattgatgaacaacgggaagacgctggatttcgtagtgtgcatcggtaacgatcgatctgatgaggacacgttcaaaagcatcgacagcatgacctccagctccgcattccttgcagttccagaggtctttgcctgttcagttggtcagaaacccagcaaagcaaagtactatgtcaacAAtgttggtgaagtagtaagattgctcaagaatgtagccggcatttcgtcgcaccgggaggccgtcagccatggacgtgtgatcttcagggatgtgatggattatgtggactgaaccacctaacctttgtaacatccaaacttgtgtacattccaatgacttcatctagatttggccgaaagcatgaatcattaccaccattaggacaactacaggagtgcaagcggaagctcagcatttttagtttaggtgatgtatactcatatgtaggcaattttgatagttgaggaggttcttgctggagaactgcactgtgaaagaaaagcccctagctttgaatagccatcgtcccatcgacttgtttcacttaccagttattaccagttgccagtgtttacctgaatggctgaatgactgaatccaatctcctgcttcaca
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| CDS seq | atggctattttgtcagttgaattattcaggagtatgatgaactgtttatgttctgtcagatggaacaaagcagctgaatgggaatcaagctatccaaaccatgattttgagtggaagcacatcgctgaaccggtcatgcaagtttacaccgaaacaactgatgggtcctccatagagccaaaggaaagtgctctattatggcattatctggatgcagaccatgactttggttcctgccaagcaaaggaactactgggtcatcttgaaagggtgctatcaaatgaacctgttgttgtgaagtgtggtcattacattgtagaagtcaaaccacagggagttagcaagggtcttgttgtggacaaggtaattcacagattgatgaacaacgggaagacgctggatttcgtagtgtgcatcggtaacgatcgatctgatgaggacacgttcaaaagcatcgacagcatgacctccagctccgcattccttgcagttccagaggtctttgcctgttcagttggtcagaaacccagcaaagcaaagtactatgtcaacAAtgttggtgaagtagtaagattgctcaagaatgtagccggcatttcgtcgcaccgggaggccgtcagccatggacgtgtgatcttcagggatgtgatggattatgtggactga
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| Protein seq | MAILSVELFRSMMNCLCSVRWNKAAEWESSYPNHDFEWKHIAEPVMQVYTETTDGSSIEPKESALLWHYLDADHDFGSCQAKELLGHLERVLSNEPVVVKCGHYIVEVKPQGVSKGLVVDKVIHRLMNNGKTLDFVVCIGNDRSDEDTFKSIDSMTSSSAFLAVPEVFACSVGQKPSKAKYYVNNVGEVVRLLKNVAGISSHREAVSHGRVIFRDVMDYVD |
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| Function | Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10 [UniProtKB/Swiss-Prot:O80738] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0019420 | OsLima_11g0019420.01 | Chr11 | 24820553 | 24821713 | + | NAM | ||
| CDS seq | atggctattttgtcagttgaattattcaggagtatgatgaactgtttatgttctgtcagatggaacaaagcagctgaatgggaatcaagctatccaaaccatgattttgagtggaagcacatcgctgaaccggtcatgcaagtttacaccgaaacaactgatgggtcctccatagagccaaaggaaagtgctctattatggcattatctggatgcagaccatgactttggttcctgccaagcaaaggaactactgggtcatcttgaaagggtgctatcaaatgaacctgttgttgtgaagtgtggtcattacattgtagaagtcaaaccacagggagttagcaagggtcttgttgtggacaaggtaattcacagattgatgaacaacgggaagacgctggatttcgtagtgtgcatcggtaacgatcgatctgatgaggacacgttcaaaagcatcgacagcatgacctccagctccgcattccttgcagttccagaggtctttgcctgttcagttggtcagaaacccagcaaagcaaagtactatgtcaacAAtgttggtgaagtagtaagattgctcaagaatgtagccggcatttcgtcgcaccgggaggccgtcagccatggacgtgtgatcttcagggatgtgatggattatgtggactga
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| Protein seq | MAILSVELFRSMMNCLCSVRWNKAAEWESSYPNHDFEWKHIAEPVMQVYTETTDGSSIEPKESALLWHYLDADHDFGSCQAKELLGHLERVLSNEPVVVKCGHYIVEVKPQGVSKGLVVDKVIHRLMNNGKTLDFVVCIGNDRSDEDTFKSIDSMTSSSAFLAVPEVFACSVGQKPSKAKYYVNNVGEVVRLLKNVAGISSHREAVSHGRVIFRDVMDYVD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0505800 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g32130 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0505800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0014450 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0021260 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0008320 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0014310 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0008270 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0379000 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0008300 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0401200 | SBH | 1.013017 | 2.000736 | 0.1181385 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0008360 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0008450 | SBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0008410 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0020740 | SBH | 0.0 | 0.0 | 1.948722 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0021250 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G021090 | SBH | 1.891782 | 4.333445 | 3.464704 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0021130 | SBH | 3.709651 | 29.698774 | 17.106880 |
