Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os12g0505800 | OGI:10069250 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr12:19381453-19382291 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCTATTTTGTCAGGTAAACATTTTGAGTACCTTTTTTTTTCTTCTTAAATCTGTTTTTATTTGCATTTTCTCCACACACTATTATGCAATTGTACAGTTGAATTATTCAGGAGTATAATGAACTGTTTATGTTCTCTCAGATGGAACAAAGCAGCTGAATGGGAATCAAGCTATCCAAACCATGATTTTGAGTGGAAGCACATCGCTGAACCGATCATGCAAGTTTACACCGAAACAACTGATGGGTCCTCCATAGAGCCAAAGGAAAGTGCTCTATTATGGCATTATCTGGATGCAGACCATGACTTCGGTTCCTGCCAAGCAAAGGAACTACTGGGTCATCTTGAAAGGGTGCTATCAAATGAACCTGTTGTTGTGAAGTGTGGTCATTACATTGTAGAAGTCAAACCACAGGTCTATACCATTTGAATTTATTACTACATTTTTTCACTTTCAACTCATTATGTCCAGCTCACACTAAATGAAATACATTACTTGTGCAGGGAGTTAGCAAGGGTCTTGTTGTGGACAAGGTAATTCACAGATTGATGAACAACGGGAAGACGCTGGATTTCATAGTGTGCATCGGTAACGATCGATCTGATGAGGACATGTTCAAAAGCATCGACAGCATGACCTCCAGCTCCGCATTTCCTGCAGTTCCAGAGGTCTTTGCCTGTTCAGTTGGTCAGAAACCCAGCAAAGCAAAATACTATGTCGACAATGCTGGTGAAGTAGTAAGATTGCTCAAGAATGTAGCCGGCATTTCGTCGCACCGGGAGGCCATCAGCCATGGACGTGTGATCTTCAGGGATGTGATCGATTATGTGGACTGA
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| CDS seq | ATGGCTATTTTGTCAGGTAAACATTTTGAATGGAACAAAGCAGCTGAATGGGAATCAAGCTATCCAAACCATGATTTTGAGTGGAAGCACATCGCTGAACCGATCATGCAAGTTTACACCGAAACAACTGATGGGTCCTCCATAGAGCCAAAGGAAAGTGCTCTATTATGGCATTATCTGGATGCAGACCATGACTTCGGTTCCTGCCAAGCAAAGGAACTACTGGGTCATCTTGAAAGGGTGCTATCAAATGAACCTGTTGTTGTGAAGTGTGGTCATTACATTGTAGAAGTCAAACCACAGGGAGTTAGCAAGGGTCTTGTTGTGGACAAGGTAATTCACAGATTGATGAACAACGGGAAGACGCTGGATTTCATAGTGTGCATCGGTAACGATCGATCTGATGAGGACATGTTCAAAAGCATCGACAGCATGACCTCCAGCTCCGCATTTCCTGCAGTTCCAGAGGTCTTTGCCTGTTCAGTTGGTCAGAAACCCAGCAAAGCAAAATACTATGTCGACAATGCTGGTGAAGTAGTAAGATTGCTCAAGAATGTAGCCGGCATTTCGTCGCACCGGGAGGCCATCAGCCATGGACGTGTGATCTTCAGGGATGTGATCGATTATGTGGACTGA
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| Protein seq | MAILSGKHFEWNKAAEWESSYPNHDFEWKHIAEPIMQVYTETTDGSSIEPKESALLWHYLDADHDFGSCQAKELLGHLERVLSNEPVVVKCGHYIVEVKPQGVSKGLVVDKVIHRLMNNGKTLDFIVCIGNDRSDEDMFKSIDSMTSSSAFPAVPEVFACSVGQKPSKAKYYVDNAGEVVRLLKNVAGISSHREAISHGRVIFRDVIDYVD |
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| Function | Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10 [UniProtKB/Swiss-Prot:O80738] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os12g0505800 | Os12t0505800-00 | Chr12 | 19381453 | 19382291 | + | irgsp1_rep | ||
| CDS seq | ATGGCTATTTTGTCAGGTAAACATTTTGAATGGAACAAAGCAGCTGAATGGGAATCAAGCTATCCAAACCATGATTTTGAGTGGAAGCACATCGCTGAACCGATCATGCAAGTTTACACCGAAACAACTGATGGGTCCTCCATAGAGCCAAAGGAAAGTGCTCTATTATGGCATTATCTGGATGCAGACCATGACTTCGGTTCCTGCCAAGCAAAGGAACTACTGGGTCATCTTGAAAGGGTGCTATCAAATGAACCTGTTGTTGTGAAGTGTGGTCATTACATTGTAGAAGTCAAACCACAGGGAGTTAGCAAGGGTCTTGTTGTGGACAAGGTAATTCACAGATTGATGAACAACGGGAAGACGCTGGATTTCATAGTGTGCATCGGTAACGATCGATCTGATGAGGACATGTTCAAAAGCATCGACAGCATGACCTCCAGCTCCGCATTTCCTGCAGTTCCAGAGGTCTTTGCCTGTTCAGTTGGTCAGAAACCCAGCAAAGCAAAATACTATGTCGACAATGCTGGTGAAGTAGTAAGATTGCTCAAGAATGTAGCCGGCATTTCGTCGCACCGGGAGGCCATCAGCCATGGACGTGTGATCTTCAGGGATGTGATCGATTATGTGGACTGA
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| Protein seq | MAILSGKHFEWNKAAEWESSYPNHDFEWKHIAEPIMQVYTETTDGSSIEPKESALLWHYLDADHDFGSCQAKELLGHLERVLSNEPVVVKCGHYIVEVKPQGVSKGLVVDKVIHRLMNNGKTLDFIVCIGNDRSDEDMFKSIDSMTSSSAFPAVPEVFACSVGQKPSKAKYYVDNAGEVVRLLKNVAGISSHREAISHGRVIFRDVIDYVD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0505800 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g32130 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0128900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0014450 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0014620 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0014510 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0014310 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0008270 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0379000 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0008300 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0287200 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0014230 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0014410 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0014390 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0014290 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0014450 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G014300 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0018930 | RBH | 0.0 | 0.0 | 0.0 |
