Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0018060 | OGI:11010520 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:23424933-23431750 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcacgcgcagaaaacattccaccacaccggcctgcggcaaatacgcacaccattctactcaaactttctaattagcttattgtgcagtcatcttttggaataaactggcccaagtaacaacagctaacacatatattttgtcgtaaaccttgtcaaaaatacggaaatatgcaatcctccatgtcttcttgaagagtatgatgcaaaacaccacccataggccagcaatgaatcctgacacaaggccaagataaaagaacattggctcaggtacatgtccagctttgttgttgttggtgtaaatatgtattgtactaaggacctatctgtaaagtgttatgctaatagaatagataaggaaggggtgagctgagtaggctaaccctagaaaaattccccaaattgaacaatatggtatcagagcgggtcaccggtgactggggaggttgaaccctagctggcgaggtcgcagcggtgcgggccgaggcgaggttggcgcggcgtgacgacgcacgcgcgaggctagcgtggccgcacgcggcggagacggttggtggccgcggcaggaagcggcactgtgccggcgcaggacggcagcgctgctaaggcgggacgtggagtgaggaagcgacggtgtcgacggcagggagcaccaacggcgacgacgcgtgcggagggctagctggtgacggcgtgtggcagaggagcaggttgttgctgctgctggtgaggtgttggtgctgctgctacttgagaaggtgaagtgggcgcttggcttgctgttgctgctgtatttgctgctgctgtgctgatttggggaagaaactgagtacttgctgctgtgctgaaaactgagaagtagtgctattgctgctgttctgttttggtgagaaactgaggagtagtgttgttgctcctattagttgatttggctaatatttgatctgccatgggggattgaagtctggtccttgttgtatctctgttaatgtggtaaagaagaagctaagggaagaaaaaaaaatgtcttctggggagggaaaggaggttgtggatactttcttgcttgttactaaaggtgatatgaaaggtttgctagaagatttgctgaagatgggcatgataggtcctaggaatgcggctggagtgtctgaagtgaaactagaattgatgccaaatgagttgaggttggaggggagcaaaaattatttgagttggtgtaggagagcccaactgatgttgagagcaaaaggggtggatcattttttactagagagttgtgaagaaccttctgataaggagagccaagcatggaggacgtggaatactacaaattccgctgtggtatcttggttgatgaaccggtggctccttctattggcaggatgatagaagctatccagaatgctgcagttgtatggaagacgctgagcaacatgtattcaggagagggaaatgtaatgatgatagttgaggctcagaacaaagtggagaatttgaagcaagaggggagaacagtccaagagtacgctagcgagctgcaacagttatgggcatatcttgaccactatgatcccctacaattgaaacatgaggatgacattgtgattggaaataaatggctgcagaggcgaagagtcattcatttcttgaaggggttgaacaaggagtttgaggataggagagcagctatgttccaccaagctacattgcccactatggaagaggccatttcagcaatggtgcaggaagagatgagattgaggttgatgagaggtacaaattctataagatcagcatacattgcagctgataatagggaatgctacaattgtgggcaagtgggtcatgtgagctacaattgtcccacttcccggaacattggtggtaggggatcgattcgaggagggcatggtggaactcgtggtggatttggaggagaccgtggtggttttgggggaaatcgtggtggtagaggaggtgatcgtggaggtcgtgttggaggtcgtggtaggggcagaggtgttcctcaggccaatgcagctacggaggatgggaaagctgttaccctaataggtgaacaagtgacacaatgggaggaatggcagaagaacaagaccaatgagagctctaacaccaccactcactttggtaacttcgccaactacgcccaagtgggcgaaggtactcaggcacaggcacttgcatctacatagacatcctatagattggatcatagactcaggagcatcaaagcatgtcacaggattgcataatactttcacatcatacactccttatatccactctgaaactatccaaatcgctgatggtacatccaagcctattcatggtatagggtcggtagagtgcacatcatcaatgaacttgtcttctgttctgcatgttccttcctttccagttaaccttctctcagttagctcggctattgatcaactcaagtgcattgttgtatttgatgagaattcttgtctgttccaggagaaggggactgggaggaggattgggactggagtcaggcgtgatgggttgtggtacatcaatcatgaggaactgggactagctgcggtggttggagatgttgagaaggagatcagtttgcttcactgtcagttaggacatccatcttttaagattttgagtaagttgtatccagacctctttagtagagtggataagcatagattggtgtgtgatgcttgtgagcttggcaaacatactcgctctacatatgttggaattggtcttcgtaactgtgagcccttcatattaatacattctgatgtttggggaccatgcccagttacttctgtgagtggtttcaagtggtttgtcacctttattgattgtcacactcgtatgacttggatttatatgcttaaacacaaaagtgaggtccttcgttgcttccaagactttcataaattagtgacaactcagtttgatgcaaaagttaagattattcggactgataatggaacagaatatatcaataatgaatttgtgtcatatgtctcagatgaggggattattcaccagactacttgtcctggcacccctcctcaaaatggtgtagctgagagaaagaatcggcatttgctagaagtggcaagatctctgatgttccagatgaatgtaccaaagtatctatggagtgaggctgtgatgacagcagcatatcttatcaatcgcatgccttccagaatacttggtatgaagtctcctgccgaactgttattgggtaagcgagagttcaaggttcctccaaaggtgtttggctgtgtttgttttgtgcgagatcaccgaccttctgttggcaagttagatcctcatgcagtaaagtgtgtgtttgttggctatgcttcgagtcagaaggggtataaatgttgggatcccattgagagaagactgtttgtgagtatggatgtgacatttcgtgagtttgagccctattataaaagtaaaggagatcttgaccaatttcttgaggaattctcgactgtcatggaggttgatagtcgagagggggagagagagagaggtgacatacatgaaaaaaatgttggtgacaagaatggagaggcagtagtgattggatcaataccatgctctattgatgatgcgagtaaagaagtagtggaagtcattgaagatacacaagatgaggatagagaaatggtccctcatgaagaggatggagaagaaggagaagtagttgttgggacaattccatgtcctatggagggagccgaaagggtgaaacaaaaggatgtgctagtttaccaaaggaggcggtttgatagtcagggggagaaaagaaaagggttagtgcaaagtcaaattgaagagttaccacacccaaaatgtccagtccctgaatcctcccagagtctctctcctccagcctccttggcttctcttgagacaattgttaatacttctccaactcttgaacatgtagaattacctcttgcacaacgtagagagactagatctaatgctagtagacctcctatacgtcttggttttgagcatcttagttctatgcatgacattgcaaactatatcacatattctcatgtttcaccagcatacaaaacatttattgcatcattatagacagtgcctataccaaaggattggaagtgtgcaaagcaggatccaaagtggaaagatgcaatgaaagaagagttgaatgcccttgtgaagaataagacttgggagcttgtaaaacttccaccagaaaaaaggacagtgggatgtaagtgggtctttacagtgaagcaaacccctgaagggaaggtggataggtataaagcaaggttagttgcaaaaggctacagtcaaacatatggaattgactatgatgagatatttgcaccagtggcaaaaatgggtacagtgagaggtttggtatcttgtgcggtgaactttgggtggccccttcatcagcttgatgtgaaaaatgcatttctccatggtgatttacatgaggaggtctacatggagatccctccaggatttgggaatagccagacagttggaaaagtatgtaaactcaagaaatccttgtatgggttgaagcagtctccacgtgcatggtttgataggttcaggcatgcagtgtgtgatatggggtattctcagtgtaatggagatcacactgtcttttacaaacatagggggacacacatcaccatcttggctgtgtatgttgatgatatagtgatcactggtgatgatgtagaagaaatcaggtgtctaaaggaaaggctgggaaaggcatttgaggtgaaggatcttggtcctcttcgctacttccttggaattgaaattgctcgttcatcaaaggggattgttctctctcagaggaagtatgttttggatctgttgacagatacaggaatgcttgggtgtcgtgcaagtactacgcctattgataggaatcaccaattgtgtgctcaatcaggtgatcccgttgataaggaagcataccaaagactggtgggacgcttgatctatctttgccatacaagacctgatatttcctatgcggttagtgttgtgagtaggtatatgcatgatcctcgaactggtcacttggatgttgttcataagattctcagatatctgaaagggactcctggaaagggattgtggtttaggaagaatgggcatctaaatgtggaaggatattgtgatgctgattgggcgagtagtatggatgatagaagatctacatcaggttattgtgtgtttgttggtggtaatcttgtttcttggcgaagcaagaagcaggcagtggtggctcggtctaccgcagaagcagaatacagagctatggctttgagcttgagtgagatgttgtggatgaggagcttgttgactgaattgcgagtgctaagaagtgacactgtgatgcttcattgtgacaataaatcagccatcagcattgcaaacaaccctgttcagcatgatcgcactaaacatgtggagattgataggttcttcattaaggagaagattgatagcggggtgcttaggttggagtatattaagtcatgtgaacaactagctgattgtctaacaaaggggttaggtcctagtgagattcaatcaatatgtaacaagatgggtatgattgaaatcttttgcccatcttgaggaggagtgttggtgtaaatatgtattgtactaaggacctatctgtaaagtgttatgctaatagaatagatgaggaaggggtgagctgagtaggctaaccctagaaaaattccccaaattgaacaatagttgtcatcaccatagccatgttgccttggttcaataTCtcccgagcagttccttcgaagaggaggcccacatagaccattgttgccattatacatatcaggatgttccatgtatagggtgccaagttgtgatccggagggtattgttcctgatagattgttgtacgacagatccaaatcgctcaaatacgataaatttgatagggtagatgggatctctccagaaagattgttccttgagagctcgagcgattccagtgactgcaatgatccaatcttgtatggaatttttccattcaagttattccttgacaaattcagatttttcaaagcagcaagagaagctatttgttcgggaattccaccaattaagcagtttgatgacaagccatcttcaggtacggaacctgaagcattgtagccgtcctctcgcttcatcccctctaattttgtgaaactccgcggtaagttacctgataaacTgttggctgctaggtccaactggcgaagattcggaagatttgtgatattgtctggaataaccccagaaaaagcattatagcttagtcgtaacaacactaaatccttcttgtctcctatccacttcggtaatttgctggagaaattgttccttgatagatctatgatttgtagctgtatgcagccttctagaaaagctgggaatgtgccagcgaatctgttgttacttaaaagaagaacttttatgtttttcatgctaaaacattgctgagggaagtctccttcaaaaagattgtttgctaagtctatggtgtccaggtattgcattttgcagaaagaccctggaatatggcctgacaaatggttgtgggaaagaattagcatgtatatattaactccaaattctgatggtagcggtccagatagggagttattgtgaatatccaatgctgaaaggtttctcggcaacagaggtatttgaccacttagtttgTttgaacgtatatcaagatattccatagccat
More
|
||||||||||
| CDS seq | atggctatggaatatcttgatatacgttcaaAcaaactaagtggtcaaatacctctgttgccgagaaacctttcagcattggatattcacaataactccctatctggaccgctaccatcagaatttggagttaatatatacatgctaattctttcccacaaccatttgtcaggccatattccagggtctttctgcaaaatgcaatacctggacaccatagacttagcaaacaatctttttgaaggagacttccctcagcaatgttttagcatgaaaaacataaaagttcttcttttaagtaacaacagattcgctggcacattcccagcttttctagaaggctgcatacagctacaaatcatagatctatcaaggaacaatttctccagcaaattaccgaagtggataggagacaagaaggatttagtgttgttacgactaagctataatgctttttctggggttattccagacaatatcacaaatcttccgaatcttcgccagttggacctagcagccaacAgtttatcaggtaacttaccgcggagtttcacaaaattagaggggatgaagcgagaggacggctacaatgcttcaggttccgtacctgaagatggcttgtcatcaaactgcttaattggtggaattcccgaacaaatagcttctcttgctgctttgaaaaatctgaatttgtcaaggaataacttgaatggaaaaattccatacaagattggatcattgcagtcactggaatcgctcgagctctcaaggaacaatctttctggagagatcccatctaccctatcaaatttatcgtatttgagcgatttggatctgtcgtacaacaatctatcaggaacaataccctccggatcacaacttggcaccctatacatggaacatcctgatatgccggtgtggtggaatgttttctgcgcgtga
More
|
||||||||||
| Protein seq | MAMEYLDIRSNKLSGQIPLLPRNLSALDIHNNSLSGPLPSEFGVNIYMLILSHNHLSGHIPGSFCKMQYLDTIDLANNLFEGDFPQQCFSMKNIKVLLLSNNRFAGTFPAFLEGCIQLQIIDLSRNNFSSKLPKWIGDKKDLVLLRLSYNAFSGVIPDNITNLPNLRQLDLAANSLSGNLPRSFTKLEGMKREDGYNASGSVPEDGLSSNCLIGGIPEQIASLAALKNLNLSRNNLNGKIPYKIGSLQSLESLELSRNNLSGEIPSTLSNLSYLSDLDLSYNNLSGTIPSGSQLGTLYMEHPDMPVWWNVFCA |
||||||||||
| Function | Receptor-like protein EIX2 [UniProtKB/Swiss-Prot:Q6JN46] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0018060 | OsLima_11g0018060.01 | Chr11 | 23424933 | 23431750 | - | NAM | ||
| CDS seq | atggctatggaatatcttgatatacgttcaaAcaaactaagtggtcaaatacctctgttgccgagaaacctttcagcattggatattcacaataactccctatctggaccgctaccatcagaatttggagttaatatatacatgctaattctttcccacaaccatttgtcaggccatattccagggtctttctgcaaaatgcaatacctggacaccatagacttagcaaacaatctttttgaaggagacttccctcagcaatgttttagcatgaaaaacataaaagttcttcttttaagtaacaacagattcgctggcacattcccagcttttctagaaggctgcatacagctacaaatcatagatctatcaaggaacaatttctccagcaaattaccgaagtggataggagacaagaaggatttagtgttgttacgactaagctataatgctttttctggggttattccagacaatatcacaaatcttccgaatcttcgccagttggacctagcagccaacAgtttatcaggtaacttaccgcggagtttcacaaaattagaggggatgaagcgagaggacggctacaatgcttcaggttccgtacctgaagatggcttgtcatcaaactgcttaattggtggaattcccgaacaaatagcttctcttgctgctttgaaaaatctgaatttgtcaaggaataacttgaatggaaaaattccatacaagattggatcattgcagtcactggaatcgctcgagctctcaaggaacaatctttctggagagatcccatctaccctatcaaatttatcgtatttgagcgatttggatctgtcgtacaacaatctatcaggaacaataccctccggatcacaacttggcaccctatacatggaacatcctgatatgccggtgtggtggaatgttttctgcgcgtga
More
|
|||||||
| Protein seq | MAMEYLDIRSNKLSGQIPLLPRNLSALDIHNNSLSGPLPSEFGVNIYMLILSHNHLSGHIPGSFCKMQYLDTIDLANNLFEGDFPQQCFSMKNIKVLLLSNNRFAGTFPAFLEGCIQLQIIDLSRNNFSSKLPKWIGDKKDLVLLRLSYNAFSGVIPDNITNLPNLRQLDLAANSLSGNLPRSFTKLEGMKREDGYNASGSVPEDGLSSNCLIGGIPEQIASLAALKNLNLSRNNLNGKIPYKIGSLQSLESLELSRNNLSGEIPSTLSNLSYLSDLDLSYNNLSGTIPSGSQLGTLYMEHPDMPVWWNVFCA
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0625900 | SBH | 0.0 | 0.132931 | 1.741421 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g36120 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0625900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0017800 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0004920 | SBH | 0.310265 | 0.0 | 0.101677 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0017740 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0004840 | SBH | 0.216128 | 0.044515 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0017790 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0331600 | SBH | 0.359548 | 0.0891925 | 0.0309935 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0018270 | RBH | 0.040696 | 0.0 | 0.079613 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0344100 | SBH | 1.287871 | 12.7846285 | 1.149585 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0017980 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0018170 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0017710 | RBH | 0.429796 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0004780 | SBH | 0.152264 | 0.0 | 0.102352 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0017640 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G017720 | SBH | 0.042523 | 0.0 | 0.112282 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0017920 | SBH | 0.0 | 0.0 | 0.0 |
