Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0017810 | OGI:11058060 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:23042205-23044085 | ||||||||
| Gene Symbol | OsFbox603, Os_F0489 | ||||||||||
| DNA seq | atggatctggaccaaccccagacgatgcccacctccggcggcggcggcggcggcggcgaccggctgagcgcgctgagcgacggcgtgatcggccacatcctgtcgttcctcccggcgaaggaggcggcgcgcgcggcggtgctctcgtcgcggtggcgccacacgttcgccgccgtccacaccgtctccctcgtggagcccgacccccccgtcgtcgaccactacgagctcgccaggtacagccccgggtggggcccgccgcccgaccccaaccagccgccgcccttcaccaacgtcgtcagcgccgccctcctcgcccgccaccgccgcgccgccgtcccgcccctgcgcgccctccacgtctccaccgtcgggtactgcagaagtgacgcctccctggtggatcagtggatcgcgtacgccgtcaaccaggccgaCcccgccgttggcctcgacctcgacctccgcctccaccgcgagccgctctgcgacaaggcctactctctccgccgccgccgcggcgcgagcgcggatcacgcagaccaggacaccgacgatgacgacgacgacgaagatgcgagccgcaaacggcggcggcggtggcggtcgaggtcgaggtcccccgtgcgatatgcgtccatcgaagatgccaatctgggtctgagtccaccgtatatgtatatcccgcgctcgccgtcgctgtcgccgccgccgccgcgtcgggagctgtagtccgcagggctgtgatgaggatgacgacgacgacgacgacgaagacgtcatctcctccgacgagaagtccacgaggggatacgactacaccccggcggtgcacgccgtcccgagcgggctcttctcctgcgcggcgctgcgctcactgtcgctcggccactgcctgctcgcgccgccggcggccatcgccctgccgtccctcgagacgctgctcctcgcccgcgtctccgacgccgggagcgacgtgcagcgcctcatctccggctgcccgcgcctcgccgacctgacgctcgaggcctgcgccacggtgaccgcgctcaccaccgtcgccggcctccgcaggctggccctccgctgctgccacgccctgcgcaccgtcgccgtcgacgcctcgccggggccgccgcgcctccaagcgttcgagtacagggggctccgtgccggacgacaccttcctcaccatccacggcggcgcttcgctgacgaccgtcgcctactgcaagatcgacatctgcggcgaggaggtcacgtcgtcgtcggagctcgccaagctcagcgcgttcctccgcctgttcgccggcgcgaagcacctccacctcgagtccgcccgcctcggctccggcctcgacgacgccgccgcgttcgcgacgctcccgaccttctcagccctctcccacctcgagctaagaggatacctccccaacgacgacgacgacgccatctacgccgcgctgaccatgatcctcgagcgcgccccgaacctggagacgctgtcgctcgtcttccacccggagcctctcgacggcggcgacgacgccatgctgcatatcacgtactacaaagaggaggagctctacgacaagcacctcctcagctacaaccggcacagcgtcctagccgcgccgacgagcggcggcggcgccatggcgccggcctgcctgaggaggcgggtgagggagatcaacctggtgctaccagggcggcgcggtgcagaggacgctggccatgtacctgctccggagcgcggcggcgatcggtgagctcgggtgcgagctcgccatggggcccttgtggatccaggacgagctggcacgggagctcgagggctgggtgatgaacaaggcggccattgtcaatcggttgatatga
More
|
||||||||||
| CDS seq | atggatctggaccaaccccagacgatgcccacctccggcggcggcggcggcggcggcgaccggctgagcgcgctgagcgacggcgtgatcggccacatcctgtcgttcctcccggcgaaggaggcggcgcgcgcggcggtgctctcgtcgcggtggcgccacacgttcgccgccgtccacaccgtctccctcgtggagcccgacccccccgtcgtcgaccactacgagctcgccaggtacagccccgggtggggcccgccgcccgaccccaaccagccgccgcccttcaccaacgtcgtcagcgccgccctcctcgcccgccaccgccgcgccgccgtcccgcccctgcgcgccctccacgtctccaccgtcgggtactgcagaagtgacgcctccctggtggatcagtggatcgcgtacgccgtcaaccaggccgaCcccgccgttggcctcgacctcgacctccgcctccaccgcgagccgctctgcgacaaggcctactctctccgccgccgccgcggcgcgagcgcggatcacgcagaccaggacaccgacgatgacgacgacgacgaagatgcgagccgcaaacggcggcggcggtggcggtcgaggtcgaggtcccccacgctgctcctcgcccgcgtctccgacgccgggagcgacgtgcagcgcctcatctccggctgcccgcgcctcgccgacctgacgctcgaggcctgcgccacggtgaccgcgctcaccaccgtcgccggcctccgcaggctggccctccgctgctgccacgccctgcgcaccgtcgccgtcgacgcctcgccggggccgccgcgcctccaagctacagggggctccgtgccggacgacaccttcctcaccatccacggcggcgcttcgctgacgaccgtcgcctactgcaagatcgacatctgcggcgaggaggtcacgtcgtcgtcggagctcgccaagctcagcgcgttcctccgcctgttcgccggcgcgaagcacctccacctcgagtccgcccgcctcggctccggcctcgacgacgccgccgcgttcgcgacgctcccgaccttctcagccctctcccacctcgagctaagaggatacctccccaacgacgacgacgacgccatctacgccgcgctgaccatgatcctcgagcgcgccccgaacctggagacgctgtcgctcgtcttccacccggagcctctcgacggcggcgacgacgccatgctgcatatcacgtactacaaagaggaggagctctacgacaagcacctcctcagctacaaccggcacagcgtcctagccgcgccgacgagcggcggcggcgccatggcgccggcctgcctgaggaggcgggtgagggagatcaacctgggcggcgcggtgcagaggacgctggccatgtacctgctccggagcgcggcggcgatcggtgagctcgggtgcgagctcgccatggggcccttgtggatccaggacgagctggcacgggagctcgagggctgggtgatgaacaaggcggccattgtcaatcggttgatatga
More
|
||||||||||
| Protein seq | MDLDQPQTMPTSGGGGGGGDRLSALSDGVIGHILSFLPAKEAARAAVLSSRWRHTFAAVHTVSLVEPDPPVVDHYELARYSPGWGPPPDPNQPPPFTNVVSAALLARHRRAAVPPLRALHVSTVGYCRSDASLVDQWIAYAVNQADPAVGLDLDLRLHREPLCDKAYSLRRRRGASADHADQDTDDDDDDEDASRKRRRRWRSRSRSPTLLLARVSDAGSDVQRLISGCPRLADLTLEACATVTALTTVAGLRRLALRCCHALRTVAVDASPGPPRLQATGGSVPDDTFLTIHGGASLTTVAYCKIDICGEEVTSSSELAKLSAFLRLFAGAKHLHLESARLGSGLDDAAAFATLPTFSALSHLELRGYLPNDDDDAIYAALTMILERAPNLETLSLVFHPEPLDGGDDAMLHITYYKEEELYDKHLLSYNRHSVLAAPTSGGGAMAPACLRRRVREINLGGAVQRTLAMYLLRSAAAIGELGCELAMGPLWIQDELARELEGWVMNKAAIVNRLI |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0017810 | OsLima_11g0017810.01 | Chr11 | 23042205 | 23044085 | + | NAM | ||
| CDS seq | atggatctggaccaaccccagacgatgcccacctccggcggcggcggcggcggcggcgaccggctgagcgcgctgagcgacggcgtgatcggccacatcctgtcgttcctcccggcgaaggaggcggcgcgcgcggcggtgctctcgtcgcggtggcgccacacgttcgccgccgtccacaccgtctccctcgtggagcccgacccccccgtcgtcgaccactacgagctcgccaggtacagccccgggtggggcccgccgcccgaccccaaccagccgccgcccttcaccaacgtcgtcagcgccgccctcctcgcccgccaccgccgcgccgccgtcccgcccctgcgcgccctccacgtctccaccgtcgggtactgcagaagtgacgcctccctggtggatcagtggatcgcgtacgccgtcaaccaggccgaCcccgccgttggcctcgacctcgacctccgcctccaccgcgagccgctctgcgacaaggcctactctctccgccgccgccgcggcgcgagcgcggatcacgcagaccaggacaccgacgatgacgacgacgacgaagatgcgagccgcaaacggcggcggcggtggcggtcgaggtcgaggtcccccacgctgctcctcgcccgcgtctccgacgccgggagcgacgtgcagcgcctcatctccggctgcccgcgcctcgccgacctgacgctcgaggcctgcgccacggtgaccgcgctcaccaccgtcgccggcctccgcaggctggccctccgctgctgccacgccctgcgcaccgtcgccgtcgacgcctcgccggggccgccgcgcctccaagctacagggggctccgtgccggacgacaccttcctcaccatccacggcggcgcttcgctgacgaccgtcgcctactgcaagatcgacatctgcggcgaggaggtcacgtcgtcgtcggagctcgccaagctcagcgcgttcctccgcctgttcgccggcgcgaagcacctccacctcgagtccgcccgcctcggctccggcctcgacgacgccgccgcgttcgcgacgctcccgaccttctcagccctctcccacctcgagctaagaggatacctccccaacgacgacgacgacgccatctacgccgcgctgaccatgatcctcgagcgcgccccgaacctggagacgctgtcgctcgtcttccacccggagcctctcgacggcggcgacgacgccatgctgcatatcacgtactacaaagaggaggagctctacgacaagcacctcctcagctacaaccggcacagcgtcctagccgcgccgacgagcggcggcggcgccatggcgccggcctgcctgaggaggcgggtgagggagatcaacctgggcggcgcggtgcagaggacgctggccatgtacctgctccggagcgcggcggcgatcggtgagctcgggtgcgagctcgccatggggcccttgtggatccaggacgagctggcacgggagctcgagggctgggtgatgaacaaggcggccattgtcaatcggttgatatga
More
|
|||||||
| Protein seq | MDLDQPQTMPTSGGGGGGGDRLSALSDGVIGHILSFLPAKEAARAAVLSSRWRHTFAAVHTVSLVEPDPPVVDHYELARYSPGWGPPPDPNQPPPFTNVVSAALLARHRRAAVPPLRALHVSTVGYCRSDASLVDQWIAYAVNQADPAVGLDLDLRLHREPLCDKAYSLRRRRGASADHADQDTDDDDDDEDASRKRRRRWRSRSRSPTLLLARVSDAGSDVQRLISGCPRLADLTLEACATVTALTTVAGLRRLALRCCHALRTVAVDASPGPPRLQATGGSVPDDTFLTIHGGASLTTVAYCKIDICGEEVTSSSELAKLSAFLRLFAGAKHLHLESARLGSGLDDAAAFATLPTFSALSHLELRGYLPNDDDDAIYAALTMILERAPNLETLSLVFHPEPLDGGDDAMLHITYYKEEELYDKHLLSYNRHSVLAAPTSGGGAMAPACLRRRVREINLGGAVQRTLAMYLLRSAAAIGELGCELAMGPLWIQDELARELEGWVMNKAAIVNRLI
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0199900 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g33180 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0199900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0016280 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0016230 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0016190 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0015770 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0016190 | SBH | 0.0 | 1.826528 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0328000 | SBH | 0.026689 | 0.260558 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0016450 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0316700 | RBH | 0.004639 | 0.365646 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0016400 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0017810 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0016010 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0015800 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0021400 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G015900 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0021920 | SBH | 0.0 | 0.0 | 0.0 |
