Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0017690 | OGI:11061860 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:22812333-22814320 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttatttattgttaaatgaccttgttcgccgctggaacagtttttccgaagaggaggcccacaaagaccattgttgccttcgtacatatttggattttctgagtagagccttatgagacgtctttggcgcaagaaacgtgccaacaatccaaaccacaaaagcggttctgaactggtccctggcccatgagttcatcccatcggggaatgtcctcctgatgacttcctctgcacccttcaaagcgctggcctcaaaccctggagcccgaatgtagtgctgtacaaaagaatccttttcatctttcgagttatccggcattggacacacctccatgccctcgaatggtatcccaagaaccctatgcacattccttggacttaattccacatcaaggttgttccccacccttagagtcctgctgtcgcaattcactctgcttagtagccatctggtgaatcttctgtcgatgccatttatctgtgggagttcaagcaatccgccaaacccaatactgcgtactgttggagttgttccaaattcacttcaagatattggccgggcttctgacgaagcggagcggaggcccgtcgccggaggcttgggccggagcgtagcggtatatatgcccttgctagggtttcgtggagacttgattctctcataagccgccataggcgtgtaacccaaaactcttgagataatgagattgttgctggctggtgcccgtggtttttccctttcgcattgaaggggtttttcacgttaaatcgtgtgtctccgctgtgattgtttttcgtttacttcatatttctatacgtcgttcataacacgtaccagatcagacttctctttgtcaaatttgccaatcaactcagcagcatgctttggtgaactcctactcgtcgccccccatacttcaggtacgttccgactgggtgttccggctcgttggcgcctgggaggggggttgcttcagactgatacgagtctcgaccgacagcaactggtgcttgtgcatgtctcatccccggtttggccgctgtttggccggtggtgttcattgtgataacaacactcctgcggtgcgacggtgagAaaaaaaaaaaacaatcagaatcccctccgaggaaaaacaaataaaaaaataaaaaaaaacaaagagaaggcggcgtccactatttgacacacagcaaaacgcgcgagtgtgttcctggccgtcgtctccacacaatctatgcgtctaatcttgtatgggttcctctggtgtgcggattggggaaggggaggaatgtttgtgtagggtttgggggggaggggagggaccgatttcttccggcgagatccgccaaagtcgccggagttcagctatcgccggtgtcaatcaagaggagggcatggccgcggcgtcatggttgtggacaagacgaagggatgggggatagaaagggacagagagagcgaaaaaaaaaaagaggaaaaaatgcataaaactgggacggggtgtggatcgatccgtacgcatggttgggaccacatgcgtcgtgtagctcttttgtatgtgggcccctaggtgtattctctaaaatctgatttactggtaaaatacctcctcagaacactatatacattccgcctcgtataggtacgtgcgaatcttgaagcagatgtgcggtagtccgcctaggtgcagaaaagagtttcccaaccagtaagatcaagtaccctcaaggaagaaaccatatccaccacatgaggccaatcaactactataccatgctaaggttgacgtctcccatgttgagataccgtaatcgtcgtaggcgtgttacccatgatatatctggtgagtaactatttgctgtgtaagagaggtcaagaactcgcaggttggaaagattaccgaggtgaggaggcaccagaccatggaaagggatcccagagagattaagatatctcaagcttttcagagagcccagaaactccggcat
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| CDS seq | atgccggagtttctgggctctctgaaaagcttgagatatcttaatctctctgggatccctttccatggtctggtgcctcctcacctcggtaatctttccaacctgcgagttcttgacctctcttacacagcaaatagttactcaccagatatatcatgggtaacacgcctacgacgattacggtatctcaacatgggagacgtcaaccttagcatggcggactaccgcacatctgcttcaagattcgcacgtacctatacgaggcggaatgtatatagtgttctgaggagagtgaattgcgacagcaggactctaagggtggggaacaaccttgatgtggaattaagtccaaggaatgtgcatagggttcttgggataccattcgagggcatggaggtgtgtccaatgccggataactcgaaagatgaaaaggattcttttgtacagcactacattcgggctccagggtttgaggccagcgctttgaagggtgcagaggaagtcatcaggaggacattccccgatgggatgaactcatgggccagggaccagttcagaaccgcttttgtggtttggattgttggcacgtttcttgcgccaaagacgtctcataaggctctactcagaaaatccaaatatgtacgaaggcaacaatggtctttgtgggcctcctcttcggaaaaactgttccagcggcgaacaaggtcatttaacaataaataa
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| Protein seq | MPEFLGSLKSLRYLNLSGIPFHGLVPPHLGNLSNLRVLDLSYTANSYSPDISWVTRLRRLRYLNMGDVNLSMADYRTSASRFARTYTRRNVYSVLRRVNCDSRTLRVGNNLDVELSPRNVHRVLGIPFEGMEVCPMPDNSKDEKDSFVQHYIRAPGFEASALKGAEEVIRRTFPDGMNSWARDQFRTAFVVWIVGTFLAPKTSHKALLRKSKYVRRQQWSLWASSSEKLFQRRTRSFNNK |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0017690 | OsLima_11g0017690.01 | Chr11 | 22812333 | 22814320 | - | NAM | ||
| CDS seq | atgccggagtttctgggctctctgaaaagcttgagatatcttaatctctctgggatccctttccatggtctggtgcctcctcacctcggtaatctttccaacctgcgagttcttgacctctcttacacagcaaatagttactcaccagatatatcatgggtaacacgcctacgacgattacggtatctcaacatgggagacgtcaaccttagcatggcggactaccgcacatctgcttcaagattcgcacgtacctatacgaggcggaatgtatatagtgttctgaggagagtgaattgcgacagcaggactctaagggtggggaacaaccttgatgtggaattaagtccaaggaatgtgcatagggttcttgggataccattcgagggcatggaggtgtgtccaatgccggataactcgaaagatgaaaaggattcttttgtacagcactacattcgggctccagggtttgaggccagcgctttgaagggtgcagaggaagtcatcaggaggacattccccgatgggatgaactcatgggccagggaccagttcagaaccgcttttgtggtttggattgttggcacgtttcttgcgccaaagacgtctcataaggctctactcagaaaatccaaatatgtacgaaggcaacaatggtctttgtgggcctcctcttcggaaaaactgttccagcggcgaacaaggtcatttaacaataaataa
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| Protein seq | MPEFLGSLKSLRYLNLSGIPFHGLVPPHLGNLSNLRVLDLSYTANSYSPDISWVTRLRRLRYLNMGDVNLSMADYRTSASRFARTYTRRNVYSVLRRVNCDSRTLRVGNNLDVELSPRNVHRVLGIPFEGMEVCPMPDNSKDEKDSFVQHYIRAPGFEASALKGAEEVIRRTFPDGMNSWARDQFRTAFVVWIVGTFLAPKTSHKALLRKSKYVRRQQWSLWASSSEKLFQRRTRSFNNK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0558900 | SBH | 0.0 | 0.0 | 0.513125 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g35550 | RBH | 0.0 | 0.0 | 0.052764 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0565920 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0017510 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0017570 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0017450 | RBH | 0.0 | 0.0 | 0.595649 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0017070 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0017350 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0328300 | SBH | 0.114675 | 0.4854225 | 0.0045635 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0017840 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0337300 | RBH | 0.0233125 | 0.011517 | 0.031032 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0017850 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0017700 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0017230 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0017120 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0017260 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G017230 | RBH | 0.0 | 0.0 | 0.259958 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0017840 | SBH | 0.0 | 0.0 | 0.0 |
