Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0017850 | OGI:11062230 | 6/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:23085929-23088631 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggacgcgctgttggagttcaaggaaggcatcgccaacgacacgacaggcctcctcgcgtcatggcggccggaagatggccaagactgctgccggtggacaggcgtccgttgcagcaaccgcacagggcatatcctcaagcttaaccttcgcagcagcatcaacccgtttgcaatgagattgttcggcaagataagtcactctctactttctcttcaccatcttcagcacctcgatctcagccacaactcgctacaagggcctaccggcgatatgccggagtttctGggctctctgaaaagcttgagatatcttaatctctctgggattcctttccatggtctggtgcctcctcacctcggtaatctttccaacctgcgagttcttgacctctcttacacagcaaatagttactcaccagatatatcatgggtaacacgcctaccacgattacggtatctcaacatgagagaagtcaaccttagcatggcagttgattggcctcatgtggtgaatatggtttcttccttgagggtactcgatcttactggttgtaatctagctactgcaaaccagtggctcccacaccttaacatgacaaatctcgaggagctccagctctctttcaacaagttcaaccacacaatcacatcttgttggttttggaacatagaaagcctcaagaacctgaaccttcggtcgacctatttgtacggtcgaattccagatgaaataggaaatttgacttccctcgaaatccttgagTtttcaggcctcgttgatgctatggaaaaccattacaGgggaatcatggtagcaaacatgacaaacctatgcaatttgagaatcctagatctcacttccagtctctcgcatggcaacatattagagttattagaaaggttaccgcagtgtccgtcgaatagattgaacgaactacacttgggaagtaacaatataagtggaaaactaccagatcggatagggaaatttgccggcattgtcaaacttgacctctctaacaaccacctcacaggatttctgccttcggagattggcatgctaacaaatttgactactattgacctaagcttgaattacatggatgggttcatcacggaagagaactttggaagcctcacaaacttgaagtatatttggttacgtggaaattccatgaagatagtttttgactctaaatggctgcctccTtttagTCTtActtatgcagaTttctcaTtttgtcagttgggcccttcgtttcctgcttggcttcaatctcaggtggatattgttgaactagacatttcaagtacagctatagttgatgcactcccagactggttctggaccaccatttcgaaggCcacatatttggacattggaaacaacacgatcagaggcaaattgccagcaaacatggagaccatgtcagtgaacttcctctctatgcgttcaaaccaattttctggtggcataccacggttgcctagaaaccttactatattggatatctcgaagaacaatttatcaggacttctacctcaaaaatttggggctccgtccatgcaagttcttgaattgtcattcaataacttcacaggtcaaattccggcatctatttgtgaactgcagttcttgtatgaaatatccttagaccacaaccatttcgagggagaaTttcctcaatgtttgggtacaacacatttaactggtctgtttttaagtaacaataggctgtcaggcaagttcccatcctttttgcagacgtgcaaaatgctagctgttgtggatctatcaagaaataatttcagtggAaaattgcctatgtgggttggagacttgacagaacttcagtttctacgactgagctacaatttgttctctgggaatattcctccgagcataacaaatcttcgaaacctctatgttttggatctttcaagcaacagtttatcaggtggcctgcctttgagtttgtcaaatttgaccgcgatgacggcgtcgtatggcaggtacgaccaatatgatggagtagatcataaaggttatcttcctgtagtcacgaagcatcaagaactttattatggttatactcgttttcccatagggagcattgacttgtcatcgaatcagttaagtggtgtacttccagaaggaatagcgtctcttgatgcattgagaaatctgaatttatcgtggaatcacttgagtggaagaattccgttcaagcttgggatcataaaattattggaatcgcttgacctttcaagaaacatgttttctggtgaaatccctcaaagcctatcaaacctgacatctttaagctacttggatttatcatataacaatctaacaggtgcaataccatcaggatcacaacttgattccctctactcagaaaatccaaatatatacgaaggcaacaatggtctttgtGgtcctcctcttcggaaaaactgttccagcggcgaacaaggtcatttaacaataaataatgaccaagaccatcagctagagccttttcactttggacttattctgggatttatattaagtctctgggccgtcttatgcagcctattattcaagaaagcatggagagttgctttcttcgacctctatgacaagctatatgacaagacacatgttttggtggccgtttcacgggcaagattcacaagaaaggcagccgcaaattag
More
|
||||||||||
| CDS seq | atggacgcgctgttggagttcaaggaaggcatcgccaacgacacgacaggcctcctcgcgtcatggcggccggaagatggccaagactgctgccggtggacaggcgtccgttgcagcaaccgcacagggcatatcctcaagcttaaccttcgcagcagcatcaacccgtttgcaatgagattgttcggcaagataagtcactctctactttctcttcaccatcttcagcacctcgatctcagccacaactcgctacaagggcctaccggcgatatgccggagtttctGggctctctgaaaagcttgagatatcttaatctctctgggattcctttccatggtctggtgcctcctcacctcggtaatctttccaacctgcgagttcttgacctctcttacacagcaaatagttactcaccagatatatcatgggtaacacgcctaccacgattacggtatctcaacatgagagaagtcaaccttagcatggcagttgattggcctcatgtggtgaatatggtttcttccttgagggtactcgatcttactggttgtaatctagctactgcaaaccagtggctcccacaccttaacatgacaaatctcgaggagctccagctctctttcaacaagttcaaccacacaatcacatcttgttggttttggaacatagaaagcctcaagaacctgaaccttcggtcgacctatttgtacggtcgaattccagatgaaataggaaatttgacttccctcgaaatccttgagTtttcaggcctcgttgatgctatggaaaaccattacaGgggaatcatggtagcaaacatgacaaacctatgcaatttgagaatcctagatctcacttccagtctctcgcatggcaacatattagagttattagaaaggttaccgcagtgtccgtcgaatagattgaacgaactacacttgggaagtaacaatataagtggaaaactaccagatcggatagggaaatttgccggcattgtcaaacttgacctctctaacaaccacctcacaggatttctgccttcggagattggcatgctaacaaatttgactactattgacctaagcttgaattacatggatgggttcatcacggaagagaactttggaagcctcacaaacttgaagtatatttggttacgtggaaattccatgaagatagtttttgactctaaatggctgcctccTtttagTCTtActtatgcagaTttctcaTtttgtcagttgggcccttcgtttcctgcttggcttcaatctcaggtggatattgttgaactagacatttcaagtacagctatagttgatgcactcccagactggttctggaccaccatttcgaaggCcacatatttggacattggaaacaacacgatcagaggcaaattgccagcaaacatggagaccatgtcagtgaacttcctctctatgcgttcaaaccaattttctggtggcataccacggttgcctagaaaccttactatattggatatctcgaagaacaatttatcaggacttctacctcaaaaatttggggctccgtccatgcaagttcttgaattgtcattcaataacttcacaggtcaaattccggcatctatttgtgaactgcagttcttgtatgaaatatccttagaccacaaccatttcgagggagaaTttcctcaatgtttgggtacaacacatttaactggtctgtttttaagtaacaataggctgtcaggcaagttcccatcctttttgcagacgtgcaaaatgctagctgttgtggatctatcaagaaataatttcagtggAaaattgcctatgtgggttggagacttgacagaacttcagtttctacgactgagctacaatttgttctctgggaatattcctccgagcataacaaatcttcgaaacctctatgttttggatctttcaagcaacagtttatcaggtggcctgcctttgagtttgtcaaatttgaccgcgatgacggcgtcgtatggcaggtacgaccaatatgatggagtagatcataaaggttatcttcctgtagtcacgaagcatcaagaactttattatggttatactcgttttcccatagggagcattgacttgtcatcgaatcagttaagtggtgtacttccagaaggaatagcgtctcttgatgcattgagaaatctgaatttatcgtggaatcacttgagtggaagaattccgttcaagcttgggatcataaaattattggaatcgcttgacctttcaagaaacatgttttctggtgaaatccctcaaagcctatcaaacctgacatctttaagctacttggatttatcatataacaatctaacaggtgcaataccatcaggatcacaacttgattccctctactcagaaaatccaaatatatacgaaggcaacaatggtctttgtGgtcctcctcttcggaaaaactgttccagcggcgaacaaggtcatttaacaataaataatgaccaagaccatcagctagagccttttcactttggacttattctgggatttatattaagtctctgggccgtcttatgcagcctattattcaagaaagcatggagagttgctttcttcgacctctatgacaagctatatgacaagacacatgttttggtggccgtttcacgggcaagattcacaagaaaggcagccgcaaattag
More
|
||||||||||
| Protein seq | MDALLEFKEGIANDTTGLLASWRPEDGQDCCRWTGVRCSNRTGHILKLNLRSSINPFAMRLFGKISHSLLSLHHLQHLDLSHNSLQGPTGDMPEFLGSLKSLRYLNLSGIPFHGLVPPHLGNLSNLRVLDLSYTANSYSPDISWVTRLPRLRYLNMREVNLSMAVDWPHVVNMVSSLRVLDLTGCNLATANQWLPHLNMTNLEELQLSFNKFNHTITSCWFWNIESLKNLNLRSTYLYGRIPDEIGNLTSLEILEFSGLVDAMENHYRGIMVANMTNLCNLRILDLTSSLSHGNILELLERLPQCPSNRLNELHLGSNNISGKLPDRIGKFAGIVKLDLSNNHLTGFLPSEIGMLTNLTTIDLSLNYMDGFITEENFGSLTNLKYIWLRGNSMKIVFDSKWLPPFSLTYADFSFCQLGPSFPAWLQSQVDIVELDISSTAIVDALPDWFWTTISKATYLDIGNNTIRGKLPANMETMSVNFLSMRSNQFSGGIPRLPRNLTILDISKNNLSGLLPQKFGAPSMQVLELSFNNFTGQIPASICELQFLYEISLDHNHFEGEFPQCLGTTHLTGLFLSNNRLSGKFPSFLQTCKMLAVVDLSRNNFSGKLPMWVGDLTELQFLRLSYNLFSGNIPPSITNLRNLYVLDLSSNSLSGGLPLSLSNLTAMTASYGRYDQYDGVDHKGYLPVVTKHQELYYGYTRFPIGSIDLSSNQLSGVLPEGIASLDALRNLNLSWNHLSGRIPFKLGIIKLLESLDLSRNMFSGEIPQSLSNLTSLSYLDLSYNNLTGAIPSGSQLDSLYSENPNIYEGNNGLCGPPLRKNCSSGEQGHLTINNDQDHQLEPFHFGLILGFILSLWAVLCSLLFKKAWRVAFFDLYDKLYDKTHVLVAVSRARFTRKAAAN |
||||||||||
| Function | Receptor-like protein EIX2 [UniProtKB/Swiss-Prot:Q6JN46] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0017850 | OsLima_11g0017850.01 | Chr11 | 23085929 | 23088631 | + | NAM | ||
| CDS seq | atggacgcgctgttggagttcaaggaaggcatcgccaacgacacgacaggcctcctcgcgtcatggcggccggaagatggccaagactgctgccggtggacaggcgtccgttgcagcaaccgcacagggcatatcctcaagcttaaccttcgcagcagcatcaacccgtttgcaatgagattgttcggcaagataagtcactctctactttctcttcaccatcttcagcacctcgatctcagccacaactcgctacaagggcctaccggcgatatgccggagtttctGggctctctgaaaagcttgagatatcttaatctctctgggattcctttccatggtctggtgcctcctcacctcggtaatctttccaacctgcgagttcttgacctctcttacacagcaaatagttactcaccagatatatcatgggtaacacgcctaccacgattacggtatctcaacatgagagaagtcaaccttagcatggcagttgattggcctcatgtggtgaatatggtttcttccttgagggtactcgatcttactggttgtaatctagctactgcaaaccagtggctcccacaccttaacatgacaaatctcgaggagctccagctctctttcaacaagttcaaccacacaatcacatcttgttggttttggaacatagaaagcctcaagaacctgaaccttcggtcgacctatttgtacggtcgaattccagatgaaataggaaatttgacttccctcgaaatccttgagTtttcaggcctcgttgatgctatggaaaaccattacaGgggaatcatggtagcaaacatgacaaacctatgcaatttgagaatcctagatctcacttccagtctctcgcatggcaacatattagagttattagaaaggttaccgcagtgtccgtcgaatagattgaacgaactacacttgggaagtaacaatataagtggaaaactaccagatcggatagggaaatttgccggcattgtcaaacttgacctctctaacaaccacctcacaggatttctgccttcggagattggcatgctaacaaatttgactactattgacctaagcttgaattacatggatgggttcatcacggaagagaactttggaagcctcacaaacttgaagtatatttggttacgtggaaattccatgaagatagtttttgactctaaatggctgcctccTtttagTCTtActtatgcagaTttctcaTtttgtcagttgggcccttcgtttcctgcttggcttcaatctcaggtggatattgttgaactagacatttcaagtacagctatagttgatgcactcccagactggttctggaccaccatttcgaaggCcacatatttggacattggaaacaacacgatcagaggcaaattgccagcaaacatggagaccatgtcagtgaacttcctctctatgcgttcaaaccaattttctggtggcataccacggttgcctagaaaccttactatattggatatctcgaagaacaatttatcaggacttctacctcaaaaatttggggctccgtccatgcaagttcttgaattgtcattcaataacttcacaggtcaaattccggcatctatttgtgaactgcagttcttgtatgaaatatccttagaccacaaccatttcgagggagaaTttcctcaatgtttgggtacaacacatttaactggtctgtttttaagtaacaataggctgtcaggcaagttcccatcctttttgcagacgtgcaaaatgctagctgttgtggatctatcaagaaataatttcagtggAaaattgcctatgtgggttggagacttgacagaacttcagtttctacgactgagctacaatttgttctctgggaatattcctccgagcataacaaatcttcgaaacctctatgttttggatctttcaagcaacagtttatcaggtggcctgcctttgagtttgtcaaatttgaccgcgatgacggcgtcgtatggcaggtacgaccaatatgatggagtagatcataaaggttatcttcctgtagtcacgaagcatcaagaactttattatggttatactcgttttcccatagggagcattgacttgtcatcgaatcagttaagtggtgtacttccagaaggaatagcgtctcttgatgcattgagaaatctgaatttatcgtggaatcacttgagtggaagaattccgttcaagcttgggatcataaaattattggaatcgcttgacctttcaagaaacatgttttctggtgaaatccctcaaagcctatcaaacctgacatctttaagctacttggatttatcatataacaatctaacaggtgcaataccatcaggatcacaacttgattccctctactcagaaaatccaaatatatacgaaggcaacaatggtctttgtGgtcctcctcttcggaaaaactgttccagcggcgaacaaggtcatttaacaataaataatgaccaagaccatcagctagagccttttcactttggacttattctgggatttatattaagtctctgggccgtcttatgcagcctattattcaagaaagcatggagagttgctttcttcgacctctatgacaagctatatgacaagacacatgttttggtggccgtttcacgggcaagattcacaagaaaggcagccgcaaattag
More
|
|||||||
| Protein seq | MDALLEFKEGIANDTTGLLASWRPEDGQDCCRWTGVRCSNRTGHILKLNLRSSINPFAMRLFGKISHSLLSLHHLQHLDLSHNSLQGPTGDMPEFLGSLKSLRYLNLSGIPFHGLVPPHLGNLSNLRVLDLSYTANSYSPDISWVTRLPRLRYLNMREVNLSMAVDWPHVVNMVSSLRVLDLTGCNLATANQWLPHLNMTNLEELQLSFNKFNHTITSCWFWNIESLKNLNLRSTYLYGRIPDEIGNLTSLEILEFSGLVDAMENHYRGIMVANMTNLCNLRILDLTSSLSHGNILELLERLPQCPSNRLNELHLGSNNISGKLPDRIGKFAGIVKLDLSNNHLTGFLPSEIGMLTNLTTIDLSLNYMDGFITEENFGSLTNLKYIWLRGNSMKIVFDSKWLPPFSLTYADFSFCQLGPSFPAWLQSQVDIVELDISSTAIVDALPDWFWTTISKATYLDIGNNTIRGKLPANMETMSVNFLSMRSNQFSGGIPRLPRNLTILDISKNNLSGLLPQKFGAPSMQVLELSFNNFTGQIPASICELQFLYEISLDHNHFEGEFPQCLGTTHLTGLFLSNNRLSGKFPSFLQTCKMLAVVDLSRNNFSGKLPMWVGDLTELQFLRLSYNLFSGNIPPSITNLRNLYVLDLSSNSLSGGLPLSLSNLTAMTASYGRYDQYDGVDHKGYLPVVTKHQELYYGYTRFPIGSIDLSSNQLSGVLPEGIASLDALRNLNLSWNHLSGRIPFKLGIIKLLESLDLSRNMFSGEIPQSLSNLTSLSYLDLSYNNLTGAIPSGSQLDSLYSENPNIYEGNNGLCGPPLRKNCSSGEQGHLTINNDQDHQLEPFHFGLILGFILSLWAVLCSLLFKKAWRVAFFDLYDKLYDKTHVLVAVSRARFTRKAAAN
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0514700 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g35450 | SBH | 0.0 | 0.0 | 0.129496 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0514700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0017670 | SBH | 0.064224 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0017680 | SBH | 0.000000 | 0.0 | 0.164889 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0017610 | SBH | 0.284751 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0017240 | SBH | 0.048217 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0017660 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0328300 | RBH | 0.114675 | 0.4854225 | 0.0045635 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0017810 | SBH | 0.0 | 0.000000 | 0.057733 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0335900 | SBH | 0.073678 | 0.892234 | 0.140461 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0017700 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0017840 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0017510 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0017300 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0017220 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G017420 | RBH | 0.0 | 0.0 | 0.530172 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0017770 | SBH | 0.0 | 0.0 | 0.0 |
