Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0017600 | OGI:11061770 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:22721254-22724575 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gaaatactaattctctgtcttcagaaatacattcatttaagaggagtgcaaaaattattattttcaaaccaagagctatatacaattagacatagtctgatattcttgacagttgcttcaatggatcaaaaatagcagagtaagatgctgctatatgcttcttcagtatcatgtcttcaagttcaagtgtcaacaacttcataatgctttgcttttaaccctacataacagatcaccctctgccaaatcttttacatgtaagaactaaaaagacatatatctgatcgtatattctgtcaatgaagcagaaataacaaagcctccaagatttcttgaacaataggacgcagaacacgacccatagaccgaacacgaaccccaaacagtgtccaaaaccaaaggacattggatcaaagtcacgctcagctatttcctgtccatctagctttgatgcatcatttgctgaacaattttctcgaagaggcggcccgcagaggccgctattgccactgtacatatatggatgctcctcatagagggtgtcaagttgcgatcctgacggtattcttcctgtaagattgttgtcagccaaatccaagaagcttagatatgtcagatttgacaagcttgaagggatttctccggagagcatgtttctcgataggtcaagcgattccaacgaccgaatggtcccaatcttttctggaattttgccactcaagcgattccatgatagattcaagtttaataatgcatcaagagaaatcatttcttctggaattatcccagtcaagtcattgagtgataagtcaatgcttaccatatccaaaattccaacaccatagttgagttcttggcccttggtgaccacagacaagctatttccaggctcaccaactacacttgcatacccttggtaaGggaatgaatgaactattccttttgtttgtgtcatagcagttaaattcgacaaaccccgaggtatggttcctgatatattatttcctgcaagattcaaatgatggaggagtttgagctttgttaagatgtttggaatattaccggagaacatgttatagcttaaccgcagaaattgtagctgcaccaagtccccaatccacattggcagtgttccagagaagctattccatccaagatccaggaaacccaaacttgtgcagctttgcacaaattgtGggaattcaccagagaggctattgttactcaaaagcaggtacctcatggttcccatcgaatcgcatcggggtagttctccaactaaaagattgttcgccaagtctaagataaacaagtcctgcgattcgcagatggattcaggaattgtacctgtgatgtgatttgagaacagaattagcgatagcaatttcggagactgaatctttggcaaaggccctgacaatgagtttatggagatgtccaagatggtgatattccttggtagctttggtatgtgcccagtaagttggtttgaactgagatagagttcttgaattgacatggcctccaaatttgccggcaatccgccatatatcgagttctcggagatatccaaaactgccatctttggaaatgcaatgctgagccaatccggaagcgtatcatttatacctgtgcttgagatatcaaggcaggagaaatccacctgccactgaagccatgcaggaaacaaaggacccattgcgcaatgcgaaaaattcgctttctcgagactgaagggaggcttccactctgaacccacctcaatcttgaggggattcagagacaagtctatcgtcgttaacctcgccaatctagcaaagtgctcttcagtgatcacaccatcaagatcattTCtactgatgtcaaggtaagtcaaattagcgagcttaccgatctcggaaggaacatgtccactgaggtggttaccatagaggtctagtgtggttaagctaccaagatacccaatttcttcagggatttgtccagtgaggaaattttcagacaacacaagggtgctcaaacctgcaaaacacccttctcctgccggtatcaatccggtgaggttaTtTGAAAGACAGATCAAGAATGTCCAAACCTGACAAATTCCCCATCGACCGCGGTATCGGACCAGTGAGATTGTTATAAGAGAGATCAAGAACGCGCAACCCGGTCAGATGCATCAGTTTGTCATAATCCGGCAAGGTTCTTGTCATACCATTGTTTGGCAGGTACAATTCCTGCAACATGTTTGATGATGAACACTGCTGCGGCAGCCTCTGCATCAGCTCGCCGATGTCGCCGCCGTCGAGGGCCGAATCGAGATCTAGCACCCTCAGATTGCAGAGGCCTCTCAGGCTTCTTGGCATGGTGGCCCTGTTGCCATTGTAGGAGAGATCAAGAACCTGGAGGGATGCCATGGCGTCCAGCTCGTCGGGGATCTGGCCGTGCAGGTGggtccccatcaggttcaggtcggtgaggctcgtgatgttccagatccaggcgagctcggctcggtggtcgaggtggttcatggagaggtcgagcaacttgaggttggtgaggttgcgaggaagaagccgccgccattgttgcgtgctcgagctcgggagcgagcaggaggagaggtggagggctgtgagggatgggagcatggcgatggcgagaggccagtctcgcgcgctgctcaggtcgaccgagctcaagctcaggtggcgcagcgatggcatgcgggcgagccatgagagctccgacgagcgcgcgagctgcggggagaaatcggtggagaggtcgaggtagcggaggctcgagaggttcccgaggtggggtgggacctcgccggagaagtagatgccggagaggttgaggtagcggaggctcgcgagcccgcccaggaacgccggcggcgggcccggcggcgagccctggaggtagttacggctgaggtcgaggtggcgcagccggcggagggagaggagcgccgggctgatcgcgccgacgagcgccgcgccgccggcgtagtaccctcggtcgtcgagctcagcgccgccgcgcctgcggcggcggcggcgtcgttgcggaggcggagcgccaccacgtgcccgttcgtccggttgctgcaccggacgccacgccaccggcagcagtcgccgcctcctccccgacgccgccacgtggcgaggcgccccgcggggtcgccggtgacgccgtccctgaacgccagcagcgcgtcgcgctcctccggcacgcatgccagcgacagggtggcggcggcggcggcggcggcgagcaagaacgtcgcggcgaggcggcgcgcggacat
More
|
||||||||||
| CDS seq | atgtccgcgcgccgcctcgccgcgacgttcttgctcgccgccgccgccgccgccgccaccctgtcgctggcatgcgtgccggaggagcgcgacgcgctgctggcgttcagggacggcgtcaccggcgaccccgcggggcgcctcgccacgtggcggcgtcggggaggaggcggcgactgctgccggtggcgtggcgtccggcgcggcggcgctgagctcgacgaccgagggtactacgccggcggcgcggcgctcgtcggcgcgatcagcccggcgctcctctccctccgccggctgcgccacctcgacctcagccgtaactacctccagggctcgccgccgggcccgccgccggcgttcctgggcgggctcgcgagcctccgctacctcaacctctccggcatctacttctccggcgaggtcccaccccacctcgggaacctctcgagcctccgctacctcgacctctccaccgatttctccccgcagctcgcgcgctcgtcggagctctcatggctcgcccgcatgccatcgctgcgccacctgagcttgagctcggtcgacctgagcagcgcgcgagactggcctctcgccatcgccatgctcccatccctcacagccctccacctctcctcctgctcgctcccgagctcgagcacgcaacaatggcggcggcttcttcctcgcaacctcaccaacctcaagttgctcgacctctccatgaaccacctcgaccaccgagccgagctcgcctggatctggaacatcacgagcctcaccgacctgaacctgatggggaccCACCTGCACGGCCAGATCCCCGACGAGCTGGACGCCATGGCATCCCTCCAGGTTCTTGATCTCTCCTACAATGGCAACAGGGCCACCATGCCAAGAAGCCTGAGAGGCCTCTGCAATCTGAGGGTGCTAGATCTCGATTCGGCCCTCGACGGCGGCGACATCGGCGAGCTGATGCAGAGGCTGCCGCAGCAGTGTTCATCATCAAACATGTTGCAGGAATTGTACCTGCCAAACAATGGTATGACAAGAACCTTGCCGGATTATGACAAACTGATGCATCTGACCGGGTTGCGCGTTCTTGATCTCTCTTATAACAATCTCACTGGTCCGATACCGCGGTCGATGGGGAATTTGTCAGgagaagggtgttttgcaggtttgagcacccttgtgttgtctgaaaatttcctcactggacaaatccctgaagaaattgggtatcttggtagcttaaccacactagacctctatggtaaccacctcagtggacatgttccttccgagatcggtaagctcgctaatttgacttaccttgacatcagtaGAaatgatcttgatggtgtgatcactgaagagcactttgctagattggcgaggttaacgacgatagacttgtctctgaatcccctcaagattgaggacttgtttatcttagacttggcgaacaatcttttagttggagaactaccccgatgcgattcgatgggaaccatgaggtacctgcttttgagtaacaatagcctctctggtgaattccCacaatttgtgcaaagctgcacaagtttgggtttcctggatcttggatggaatagcttctctggaacactgccaatgtggattggggacttggtgcagctacaatttctgcggttaagctataacatgttctccggaaataatatatcaggaaccatacctcggggtttgtcgaatttaactgctatgacacaaacaaaaggaatagttcattcattccCttaccaagggtatgcaagtgtagttggtgagcctggaaatagcttgtctgtggtcaccaagggccaagaactcaactatggtgttggaattttggatatggtaagcattgacttatcactcaatgacttgactgggataattccagaagaaatgatttctcttgatgcattattaaacttgaatctatcatggaatcgcttgagtggcaaaattccagaaaagattgggaccattcggtcgttggaatcgcttgacctatcgagaaacatgctctccggagaaatcccttcaagcttgtcaaatctgacatatctaagcttcttggatttggctgacaacaatcttacaggaagaataccgtcaggatcgcaacttgacaccctctatgaggagcatccatatatgtacagtggcaatagcggcctctgcgggccgcctcttcgagaaaattgttcagcaaatgatgcatcaaagctagatggacaggaaatagctgagcgtgactttgatccaatgtcctttggttttggacactgtttggggttcgtgttcggtctatgggtcgtgttctgcgtcctattgttcaagaaatcttggaggctttgttatttctgcttcattgacagaatatacgatcagatatatgtctttttagttcttacatgtaaaagatttggcagagggtga
More
|
||||||||||
| Protein seq | MSARRLAATFLLAAAAAAATLSLACVPEERDALLAFRDGVTGDPAGRLATWRRRGGGGDCCRWRGVRRGGAELDDRGYYAGGAALVGAISPALLSLRRLRHLDLSRNYLQGSPPGPPPAFLGGLASLRYLNLSGIYFSGEVPPHLGNLSSLRYLDLSTDFSPQLARSSELSWLARMPSLRHLSLSSVDLSSARDWPLAIAMLPSLTALHLSSCSLPSSSTQQWRRLLPRNLTNLKLLDLSMNHLDHRAELAWIWNITSLTDLNLMGTHLHGQIPDELDAMASLQVLDLSYNGNRATMPRSLRGLCNLRVLDLDSALDGGDIGELMQRLPQQCSSSNMLQELYLPNNGMTRTLPDYDKLMHLTGLRVLDLSYNNLTGPIPRSMGNLSGEGCFAGLSTLVLSENFLTGQIPEEIGYLGSLTTLDLYGNHLSGHVPSEIGKLANLTYLDISRNDLDGVITEEHFARLARLTTIDLSLNPLKIEDLFILDLANNLLVGELPRCDSMGTMRYLLLSNNSLSGEFPQFVQSCTSLGFLDLGWNSFSGTLPMWIGDLVQLQFLRLSYNMFSGNNISGTIPRGLSNLTAMTQTKGIVHSFPYQGYASVVGEPGNSLSVVTKGQELNYGVGILDMVSIDLSLNDLTGIIPEEMISLDALLNLNLSWNRLSGKIPEKIGTIRSLESLDLSRNMLSGEIPSSLSNLTYLSFLDLADNNLTGRIPSGSQLDTLYEEHPYMYSGNSGLCGPPLRENCSANDASKLDGQEIAERDFDPMSFGFGHCLGFVFGLWVVFCVLLFKKSWRLCYFCFIDRIYDQIYVFLVLTCKRFGRG |
||||||||||
| Function | Receptor-like protein EIX2 [UniProtKB/Swiss-Prot:Q6JN46] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0017600 | OsLima_11g0017600.01 | Chr11 | 22721254 | 22724575 | - | NAM | ||
| CDS seq | atgtccgcgcgccgcctcgccgcgacgttcttgctcgccgccgccgccgccgccgccaccctgtcgctggcatgcgtgccggaggagcgcgacgcgctgctggcgttcagggacggcgtcaccggcgaccccgcggggcgcctcgccacgtggcggcgtcggggaggaggcggcgactgctgccggtggcgtggcgtccggcgcggcggcgctgagctcgacgaccgagggtactacgccggcggcgcggcgctcgtcggcgcgatcagcccggcgctcctctccctccgccggctgcgccacctcgacctcagccgtaactacctccagggctcgccgccgggcccgccgccggcgttcctgggcgggctcgcgagcctccgctacctcaacctctccggcatctacttctccggcgaggtcccaccccacctcgggaacctctcgagcctccgctacctcgacctctccaccgatttctccccgcagctcgcgcgctcgtcggagctctcatggctcgcccgcatgccatcgctgcgccacctgagcttgagctcggtcgacctgagcagcgcgcgagactggcctctcgccatcgccatgctcccatccctcacagccctccacctctcctcctgctcgctcccgagctcgagcacgcaacaatggcggcggcttcttcctcgcaacctcaccaacctcaagttgctcgacctctccatgaaccacctcgaccaccgagccgagctcgcctggatctggaacatcacgagcctcaccgacctgaacctgatggggaccCACCTGCACGGCCAGATCCCCGACGAGCTGGACGCCATGGCATCCCTCCAGGTTCTTGATCTCTCCTACAATGGCAACAGGGCCACCATGCCAAGAAGCCTGAGAGGCCTCTGCAATCTGAGGGTGCTAGATCTCGATTCGGCCCTCGACGGCGGCGACATCGGCGAGCTGATGCAGAGGCTGCCGCAGCAGTGTTCATCATCAAACATGTTGCAGGAATTGTACCTGCCAAACAATGGTATGACAAGAACCTTGCCGGATTATGACAAACTGATGCATCTGACCGGGTTGCGCGTTCTTGATCTCTCTTATAACAATCTCACTGGTCCGATACCGCGGTCGATGGGGAATTTGTCAGgagaagggtgttttgcaggtttgagcacccttgtgttgtctgaaaatttcctcactggacaaatccctgaagaaattgggtatcttggtagcttaaccacactagacctctatggtaaccacctcagtggacatgttccttccgagatcggtaagctcgctaatttgacttaccttgacatcagtaGAaatgatcttgatggtgtgatcactgaagagcactttgctagattggcgaggttaacgacgatagacttgtctctgaatcccctcaagattgaggacttgtttatcttagacttggcgaacaatcttttagttggagaactaccccgatgcgattcgatgggaaccatgaggtacctgcttttgagtaacaatagcctctctggtgaattccCacaatttgtgcaaagctgcacaagtttgggtttcctggatcttggatggaatagcttctctggaacactgccaatgtggattggggacttggtgcagctacaatttctgcggttaagctataacatgttctccggaaataatatatcaggaaccatacctcggggtttgtcgaatttaactgctatgacacaaacaaaaggaatagttcattcattccCttaccaagggtatgcaagtgtagttggtgagcctggaaatagcttgtctgtggtcaccaagggccaagaactcaactatggtgttggaattttggatatggtaagcattgacttatcactcaatgacttgactgggataattccagaagaaatgatttctcttgatgcattattaaacttgaatctatcatggaatcgcttgagtggcaaaattccagaaaagattgggaccattcggtcgttggaatcgcttgacctatcgagaaacatgctctccggagaaatcccttcaagcttgtcaaatctgacatatctaagcttcttggatttggctgacaacaatcttacaggaagaataccgtcaggatcgcaacttgacaccctctatgaggagcatccatatatgtacagtggcaatagcggcctctgcgggccgcctcttcgagaaaattgttcagcaaatgatgcatcaaagctagatggacaggaaatagctgagcgtgactttgatccaatgtcctttggttttggacactgtttggggttcgtgttcggtctatgggtcgtgttctgcgtcctattgttcaagaaatcttggaggctttgttatttctgcttcattgacagaatatacgatcagatatatgtctttttagttcttacatgtaaaagatttggcagagggtga
More
|
|||||||
| Protein seq | MSARRLAATFLLAAAAAAATLSLACVPEERDALLAFRDGVTGDPAGRLATWRRRGGGGDCCRWRGVRRGGAELDDRGYYAGGAALVGAISPALLSLRRLRHLDLSRNYLQGSPPGPPPAFLGGLASLRYLNLSGIYFSGEVPPHLGNLSSLRYLDLSTDFSPQLARSSELSWLARMPSLRHLSLSSVDLSSARDWPLAIAMLPSLTALHLSSCSLPSSSTQQWRRLLPRNLTNLKLLDLSMNHLDHRAELAWIWNITSLTDLNLMGTHLHGQIPDELDAMASLQVLDLSYNGNRATMPRSLRGLCNLRVLDLDSALDGGDIGELMQRLPQQCSSSNMLQELYLPNNGMTRTLPDYDKLMHLTGLRVLDLSYNNLTGPIPRSMGNLSGEGCFAGLSTLVLSENFLTGQIPEEIGYLGSLTTLDLYGNHLSGHVPSEIGKLANLTYLDISRNDLDGVITEEHFARLARLTTIDLSLNPLKIEDLFILDLANNLLVGELPRCDSMGTMRYLLLSNNSLSGEFPQFVQSCTSLGFLDLGWNSFSGTLPMWIGDLVQLQFLRLSYNMFSGNNISGTIPRGLSNLTAMTQTKGIVHSFPYQGYASVVGEPGNSLSVVTKGQELNYGVGILDMVSIDLSLNDLTGIIPEEMISLDALLNLNLSWNRLSGKIPEKIGTIRSLESLDLSRNMLSGEIPSSLSNLTYLSFLDLADNNLTGRIPSGSQLDTLYEEHPYMYSGNSGLCGPPLRENCSANDASKLDGQEIAERDFDPMSFGFGHCLGFVFGLWVVFCVLLFKKSWRLCYFCFIDRIYDQIYVFLVLTCKRFGRG
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.032467 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0558400 | RBH | 0.196530 | 0.162529 | 0.772140 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g35410 | RBH | 0.123485 | 0.101567 | 0.184678 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0558400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0017420 | RBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0017480 | RBH | 0.000000 | 0.955986 | 0.487259 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0017360 | RBH | 0.000000 | 1.092289 | 0.270482 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0016980 | RBH | 0.027830 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0017260 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0325600 | RBH | 0.004941 | 0.1687735 | 0.1525435 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0017760 | RBH | 0.0 | 0.092452 | 0.059925 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0335300 | RBH | 0.0154985 | 0.1208825 | 0.126069 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0017890 | SBH | 0.019030 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0017630 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0017150 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0017020 | RBH | 0.078740 | 0.0 | 0.193975 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0017180 | RBH | 0.028106 | 1.415655 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G017130 | RBH | 0.000000 | 0.000000 | 0.517097 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0017470 | RBH | 0.0 | 0.0 | 0.000000 |
