Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0017890 | OGI:11062290 | 8/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:23128259-23131158 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgaagcacaccaatccggccatcctcgtcaccaccaccaccaccaccttcttcttcgtcttcttcttcttggtgatcaaccacggcgatatcgatgcagcgcaattgccGggggcagctgccaccggcggcggctgcttgccgcacgagagggaggcgctgctagccttcaaggaaggcatcaccggcgacccgatgggcctcgtcgcgtcttggcagcaggagaacaactgctgccgttggagaggcgtccgttgcagcagccgggctggggccagccatgtcgttgagctccagctccgcaacgacgcggatccggaggaggacaacggctacgacagcgctctggtcggctggatcacaccttcgctgctctccctggagcatctggagcgcctcgacctcagcaggaacaacctCAcagggcctggctatcgtctcccggagttcctgggttctctcaaaagcttgagatatctgaacctctctgacgtaccattcaccggtatggtgcctcctcaactcggtaatctttccaagttggaataccttgacctgtctgcaaaggcactccagatcatgtctttaccgggcatgtattctagggacatcacatggttgaagaacctccctctgctgcaacatcttagccttaattttgtaaaccttagcacagtagatggttggcctcatgccatcaatatgctcccttctctgcgggaactatcactttctctctgctcactgggaagagcaaaccactcctttcttcacctcaaccttacaaaacttgacaaggtagatctctccgaaaacatcttcaatcacccggtcgcatcggcatgggtttggaatgtgacaaggctcaagtatctcaatcttaggctcaccggtctatatggccaacttccccgtgcgatcttaggagacaagatggcgtcccttcaagtccttgatttgtcatataaccacaacatgggcatcatggcagcagatttgaggaacctatgcgatttagaaatccttgatctcacacagactctcccatctggagacatcacagagttatttgacaacttgacacagtgttcatccaggaaattggcagaattgtatttgggaggaaacaatatcaccggaaaactgccacaatggatggggatattgtccagtttagtcacccttgacctctctggcaaccacctcactggacatgtgccatacggtatagccacactcacaaatctgactaactttgacctccgcgacaataacctggatggtgtcgtcacaggaaggcacttagctggtctaaggagcttgaagaatataggcttatctcacaattccttgaaggttgagattgatcctgaatggtcacctccctttagtctagagtatgggtattttgattcttgccatatgggtcccaattttcctgcctggctgcaatctcaggtgggtattctcaaacttgttatgtcaaacacaagtatacatgataccctaccacactggttctgcacaacattttctcaggctgcattGTAGACATGTCCAACAACAGAATTGGTggtgaactgccaacttgtatgggaacaatgtcgttggaacaactctatctaagttcgaaccaaatagttggtcaattacctgtgttgccaagtagcctcgagattctggacatgtccagtaactccctatcgggacctttgccaagagattttggaactccaaatctagttgcattggatctcttctccaaccatttcaatggccatattccagcatcgatgtgtgaattgcaatttttgttcgccttggacttatctaacaatctcatggacggagagcttcctgactgtagttcatctgggataagattcatgatgtacctacgtttgagtaacaatagtttttatggtaagttcccatccacctttctgcagaactgtccacttctaaattttgttgatctaacacagaataaattctctgggatattgcctacatggattggagaatttagtcaattatcagtcctacgggtgagcaacaacatgctctctggaaatattccagccggcatcactgaacttagacatctttatcatttggacctggcaagcaataggctatcaggtgccatacctagggacctatcaaatttgaaggcaatgacactgcaaccgtcagaaagacaaaacaacactgtagttatatcaggagttgaatacatttcccctgtgaccactaagggacaaaggcgtttgtacgatcaagaaaacgtcgaagtggtgaccattgacttgtcgtcgaatagcttgactggtggaatacctgagagtatagcttctcttgatggattggtaaatctgaatctgtcattgaaccacttgagtggaaaaattccagacaagattgggtccatgaagtcgttgcaatcacttgacttctctaggaacatgctttctggagaaatcccgcgcagcatatctcagttgacatatttaagctatttggatttgtcatacaataatcttacaggaatgataccttcaggttcgcaacttgacaccctctatgatcagcatccttacatgtacaatggcaacagcggtctttgtgggcctcctctgcgaaagaactgttcaagcaatggtacaccaaagcaaggccgatcggcagtaacaactagacgaggttcccgtatagatccatttttctttggtcttgtcctaggattcatagctggtctttggttggttttttgcgccatgttactgaagaaatcgtggaggattgcttatttccgtttctttgacaagctgtgtgataaagtatatgtgattatggtcgttggttggggaagattgactaggaggacacttacaaattaa
More
|
||||||||||
| CDS seq | atgaagcacaccaatccggccatcctcgtcaccaccaccaccaccaccttcttcttcgtcttcttcttcttggtgatcaaccacggcgatatcgatgcagcgcaattgccGggggcagctgccaccggcggcggctgcttgccgcacgagagggaggcgctgctagccttcaaggaaggcatcaccggcgacccgatgggcctcgtcgcgtcttggcagcaggagaacaactgctgccgttggagaggcgtccgttgcagcagccgggctggggccagccatgtcgttgagctccagctccgcaacgacgcggatccggaggaggacaacggctacgacagcgctctggtcggctggatcacaccttcgctgctctccctggagcatctggagcgcctcgacctcagcaggaacaacctCAcagggcctggctatcgtctcccggagttcctgggttctctcaaaagcttgagatatctgaacctctctgacgtaccattcaccggtatggtgcctcctcaactcggtaatctttccaagttggaataccttgacctgtctgcaaaggcactccagatcatgtctttaccgggcatgtattctagggacatcacatggttgaagaacctccctctgctgcaacatcttagccttaattttgtaaaccttagcacagtagatggttggcctcatgccatcaatatgctcccttctctgcgggaactatcactttctctctgctcactgggaagagcaaaccactcctttcttcacctcaaccttacaaaacttgacaaggtagatctctccgaaaacatcttcaatcacccggtcgcatcggcatgggtttggaatgtgacaaggctcaagtatctcaatcttaggctcaccggtctatatggccaacttccccgtgcgatcttaggagacaagatggcgtcccttcaagtccttgatttgtcatataaccacaacatgggcatcatggcagcagatttgaggaacctatgcgatttagaaatccttgatctcacacagactctcccatctggagacatcacagagttatttgacaacttgacacagtgttcatccaggaaattggcagaattgtatttgggaggaaacaatatcaccggaaaactgccacaatggatggggatattgtccagtttagtcacccttgacctctctggcaaccacctcactggacatgtgccatacggtatagccacactcacaaatctgactaactttgacctccgcgacaataacctggatggtgtcgtcacaggaaggcacttagctggtctaaggagcttgaagaatataggcttatctcacaattccttgaaggttgagattgatcctgaatggtcacctccctttagtctagagtatgggtattttgattcttgccatatgggtcccaattttcctgcctggctgcaatctcagaataaattctctgggatattgcctacatggattggagaatttagtcaattatcagtcctacgggtgagcaacaacatgctctctggaaatattccagccggcatcactgaacttagacatctttatcatttggacctggcaagcaataggctatcaggtgccatacctagggacctatcaaatttgaaggcaatgacactgcaaccgtcagaaagacaaaacaacactgtagttatatcaggagttgaatacatttcccctgtgaccactaagggacaaaggcgtttgtacgatcaagaaaacgtcgaagtggtgaccattgacttgtcgtcgaatagcttgactggtggaatacctgagagtatagcttctcttgatggattggtaaatctgaatctgtcattgaaccacttgagtggaaaaattccagacaagattgggtccatgaagtcgttgcaatcacttgacttctctaggaacatgctttctggagaaatcccgcgcagcatatctcagttgacatatttaagctatttggatttgtcatacaataatcttacaggaatgataccttcaggttcgcaacttgacaccctctatgatcagcatccttacatgtacaatggcaacagcggtctttgtgggcctcctctgcgaaagaactgttcaagcaatggtacaccaaagcaaggccgatcggcagtaacaactagacgaggttcccgtatagatccatttttctttggtcttgtcctaggattcatagctggtctttggttggttttttgcgccatgttactgaagaaatcgtggaggattgcttatttccgtttctttgacaagctgtgtgataaagtatatgtgattatggtcgttggttggggaagattgactaggaggacacttacaaattaa
More
|
||||||||||
| Protein seq | MKHTNPAILVTTTTTTFFFVFFFLVINHGDIDAAQLPGAAATGGGCLPHEREALLAFKEGITGDPMGLVASWQQENNCCRWRGVRCSSRAGASHVVELQLRNDADPEEDNGYDSALVGWITPSLLSLEHLERLDLSRNNLTGPGYRLPEFLGSLKSLRYLNLSDVPFTGMVPPQLGNLSKLEYLDLSAKALQIMSLPGMYSRDITWLKNLPLLQHLSLNFVNLSTVDGWPHAINMLPSLRELSLSLCSLGRANHSFLHLNLTKLDKVDLSENIFNHPVASAWVWNVTRLKYLNLRLTGLYGQLPRAILGDKMASLQVLDLSYNHNMGIMAADLRNLCDLEILDLTQTLPSGDITELFDNLTQCSSRKLAELYLGGNNITGKLPQWMGILSSLVTLDLSGNHLTGHVPYGIATLTNLTNFDLRDNNLDGVVTGRHLAGLRSLKNIGLSHNSLKVEIDPEWSPPFSLEYGYFDSCHMGPNFPAWLQSQNKFSGILPTWIGEFSQLSVLRVSNNMLSGNIPAGITELRHLYHLDLASNRLSGAIPRDLSNLKAMTLQPSERQNNTVVISGVEYISPVTTKGQRRLYDQENVEVVTIDLSSNSLTGGIPESIASLDGLVNLNLSLNHLSGKIPDKIGSMKSLQSLDFSRNMLSGEIPRSISQLTYLSYLDLSYNNLTGMIPSGSQLDTLYDQHPYMYNGNSGLCGPPLRKNCSSNGTPKQGRSAVTTRRGSRIDPFFFGLVLGFIAGLWLVFCAMLLKKSWRIAYFRFFDKLCDKVYVIMVVGWGRLTRRTLTN |
||||||||||
| Function | Receptor-like protein EIX2 [UniProtKB/Swiss-Prot:Q6JN46] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0017890 | OsLima_11g0017890.01 | Chr11 | 23128259 | 23131158 | + | NAM | ||
| CDS seq | atgaagcacaccaatccggccatcctcgtcaccaccaccaccaccaccttcttcttcgtcttcttcttcttggtgatcaaccacggcgatatcgatgcagcgcaattgccGggggcagctgccaccggcggcggctgcttgccgcacgagagggaggcgctgctagccttcaaggaaggcatcaccggcgacccgatgggcctcgtcgcgtcttggcagcaggagaacaactgctgccgttggagaggcgtccgttgcagcagccgggctggggccagccatgtcgttgagctccagctccgcaacgacgcggatccggaggaggacaacggctacgacagcgctctggtcggctggatcacaccttcgctgctctccctggagcatctggagcgcctcgacctcagcaggaacaacctCAcagggcctggctatcgtctcccggagttcctgggttctctcaaaagcttgagatatctgaacctctctgacgtaccattcaccggtatggtgcctcctcaactcggtaatctttccaagttggaataccttgacctgtctgcaaaggcactccagatcatgtctttaccgggcatgtattctagggacatcacatggttgaagaacctccctctgctgcaacatcttagccttaattttgtaaaccttagcacagtagatggttggcctcatgccatcaatatgctcccttctctgcgggaactatcactttctctctgctcactgggaagagcaaaccactcctttcttcacctcaaccttacaaaacttgacaaggtagatctctccgaaaacatcttcaatcacccggtcgcatcggcatgggtttggaatgtgacaaggctcaagtatctcaatcttaggctcaccggtctatatggccaacttccccgtgcgatcttaggagacaagatggcgtcccttcaagtccttgatttgtcatataaccacaacatgggcatcatggcagcagatttgaggaacctatgcgatttagaaatccttgatctcacacagactctcccatctggagacatcacagagttatttgacaacttgacacagtgttcatccaggaaattggcagaattgtatttgggaggaaacaatatcaccggaaaactgccacaatggatggggatattgtccagtttagtcacccttgacctctctggcaaccacctcactggacatgtgccatacggtatagccacactcacaaatctgactaactttgacctccgcgacaataacctggatggtgtcgtcacaggaaggcacttagctggtctaaggagcttgaagaatataggcttatctcacaattccttgaaggttgagattgatcctgaatggtcacctccctttagtctagagtatgggtattttgattcttgccatatgggtcccaattttcctgcctggctgcaatctcagaataaattctctgggatattgcctacatggattggagaatttagtcaattatcagtcctacgggtgagcaacaacatgctctctggaaatattccagccggcatcactgaacttagacatctttatcatttggacctggcaagcaataggctatcaggtgccatacctagggacctatcaaatttgaaggcaatgacactgcaaccgtcagaaagacaaaacaacactgtagttatatcaggagttgaatacatttcccctgtgaccactaagggacaaaggcgtttgtacgatcaagaaaacgtcgaagtggtgaccattgacttgtcgtcgaatagcttgactggtggaatacctgagagtatagcttctcttgatggattggtaaatctgaatctgtcattgaaccacttgagtggaaaaattccagacaagattgggtccatgaagtcgttgcaatcacttgacttctctaggaacatgctttctggagaaatcccgcgcagcatatctcagttgacatatttaagctatttggatttgtcatacaataatcttacaggaatgataccttcaggttcgcaacttgacaccctctatgatcagcatccttacatgtacaatggcaacagcggtctttgtgggcctcctctgcgaaagaactgttcaagcaatggtacaccaaagcaaggccgatcggcagtaacaactagacgaggttcccgtatagatccatttttctttggtcttgtcctaggattcatagctggtctttggttggttttttgcgccatgttactgaagaaatcgtggaggattgcttatttccgtttctttgacaagctgtgtgataaagtatatgtgattatggtcgttggttggggaagattgactaggaggacacttacaaattaa
More
|
|||||||
| Protein seq | MKHTNPAILVTTTTTTFFFVFFFLVINHGDIDAAQLPGAAATGGGCLPHEREALLAFKEGITGDPMGLVASWQQENNCCRWRGVRCSSRAGASHVVELQLRNDADPEEDNGYDSALVGWITPSLLSLEHLERLDLSRNNLTGPGYRLPEFLGSLKSLRYLNLSDVPFTGMVPPQLGNLSKLEYLDLSAKALQIMSLPGMYSRDITWLKNLPLLQHLSLNFVNLSTVDGWPHAINMLPSLRELSLSLCSLGRANHSFLHLNLTKLDKVDLSENIFNHPVASAWVWNVTRLKYLNLRLTGLYGQLPRAILGDKMASLQVLDLSYNHNMGIMAADLRNLCDLEILDLTQTLPSGDITELFDNLTQCSSRKLAELYLGGNNITGKLPQWMGILSSLVTLDLSGNHLTGHVPYGIATLTNLTNFDLRDNNLDGVVTGRHLAGLRSLKNIGLSHNSLKVEIDPEWSPPFSLEYGYFDSCHMGPNFPAWLQSQNKFSGILPTWIGEFSQLSVLRVSNNMLSGNIPAGITELRHLYHLDLASNRLSGAIPRDLSNLKAMTLQPSERQNNTVVISGVEYISPVTTKGQRRLYDQENVEVVTIDLSSNSLTGGIPESIASLDGLVNLNLSLNHLSGKIPDKIGSMKSLQSLDFSRNMLSGEIPRSISQLTYLSYLDLSYNNLTGMIPSGSQLDTLYDQHPYMYNGNSGLCGPPLRKNCSSNGTPKQGRSAVTTRRGSRIDPFFFGLVLGFIAGLWLVFCAMLLKKSWRIAYFRFFDKLCDKVYVIMVVGWGRLTRRTLTN
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.019030 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0560900 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g35840 | SBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0560900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0017470 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0017680 | SBH | 0.000000 | 0.0 | 0.164889 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0017410 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0017030 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0017620 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0331200 | SBH | 0 | 0.022514 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0017970 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0342400 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0017930 | SBH | 0.033251 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0017890 | RBH | 0.062875 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0017550 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0017340 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0017380 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G017480 | RBH | 0.027022 | 0.0 | 0.121912 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0017770 | RBH | 0.0 | 0.0 | 0.0 |
