Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0015460 | OGI:11055230 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:20345637-20346312 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcaagagcaaaaaaaatatgaatgacttgcctggatttgaaaataattatacaattgttgacaaaggacaacaaggtccttgccagcactatcatctgcacctagattcaatttgtgtctttggcacttgattgcacaagtaagctgattgtctagacgtctaactatagatggaagcaaatcatccacgatgaagagcctgagactcgtatcatcagttgttgcaaggtgaatgagagaacgtaaaaaaggaatagccttgcttgttgcttcatcatccacaaagtacccaaagaggctcatatccagccagtcaaaacaatcaccagttaaaataaacctataagattagcagctttttacttgttctttatatcaaaattatcatccaacaaaaaagaacataaaaataacattgatagtagattacaagttagccaaagtagtacctaaagagagagattgatgacatagattcaggatcttgcaaatagttttcttctgttactgccaatactccaagaaattccgaaacttcacgagtgaaatcaagtagtagtttttgctgtagcttttctgtctcaccaaattcagaaaggaatggtacttcagctttccctttgtataaatgattgaaccaagcaaaattaagtacaaatttacactgtcgtaacat
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| CDS seq | atgttacgacagtgtaaatttgtacttaattttgcttggttcaatcatttatacaaagggaaagctgaagtaccattcctttctgaatttggtgagacagaaaagctacagcaaaaactactacttgatttcactcgtgaagtttcggaatttcttggagtattggcagtaacagaagaaaactatttgcaagatcctgaatctatgtcatcaatctctctctttaggtttattttaactggtgattgttttgactggctggatatgagcctctttgggtactttgtggatgatgaagcaacaagcaaggctattccttttttacgttctctcattcaccttgcaacaactgatgatacgagtctcaggctcttcatcgtggatgatttgcttccatctatagttagacgtctagacaatcagcttacttgtgcaatcaagtgccaaagacacaaattgaatctaggtgcagatgatagtgctggcaaggaccttgttgtcctttgtcaacaattgtataattattttcaaatccaggcaagtcattcatattttttttgctcttga
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| Protein seq | MLRQCKFVLNFAWFNHLYKGKAEVPFLSEFGETEKLQQKLLLDFTREVSEFLGVLAVTEENYLQDPESMSSISLFRFILTGDCFDWLDMSLFGYFVDDEATSKAIPFLRSLIHLATTDDTSLRLFIVDDLLPSIVRRLDNQLTCAIKCQRHKLNLGADDSAGKDLVVLCQQLYNYFQIQASHSYFFCS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0015460 | OsLima_11g0015460.01 | Chr11 | 20345637 | 20346312 | - | NAM | ||
| CDS seq | atgttacgacagtgtaaatttgtacttaattttgcttggttcaatcatttatacaaagggaaagctgaagtaccattcctttctgaatttggtgagacagaaaagctacagcaaaaactactacttgatttcactcgtgaagtttcggaatttcttggagtattggcagtaacagaagaaaactatttgcaagatcctgaatctatgtcatcaatctctctctttaggtttattttaactggtgattgttttgactggctggatatgagcctctttgggtactttgtggatgatgaagcaacaagcaaggctattccttttttacgttctctcattcaccttgcaacaactgatgatacgagtctcaggctcttcatcgtggatgatttgcttccatctatagttagacgtctagacaatcagcttacttgtgcaatcaagtgccaaagacacaaattgaatctaggtgcagatgatagtgctggcaaggaccttgttgtcctttgtcaacaattgtataattattttcaaatccaggcaagtcattcatattttttttgctcttga
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| Protein seq | MLRQCKFVLNFAWFNHLYKGKAEVPFLSEFGETEKLQQKLLLDFTREVSEFLGVLAVTEENYLQDPESMSSISLFRFILTGDCFDWLDMSLFGYFVDDEATSKAIPFLRSLIHLATTDDTSLRLFIVDDLLPSIVRRLDNQLTCAIKCQRHKLNLGADDSAGKDLVVLCQQLYNYFQIQASHSYFFCS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.292220 | 0.214302 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0516800 | RBH | 0.000000 | 0.0 | 2.838117 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g31770 | SBH | 1.311175 | 1.475178 | 6.330320 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0516800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0015310 | RBH | 0.0 | 0.0 | 3.820550 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0015270 | RBH | 0.0 | 0.0 | 2.159299 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0015220 | RBH | 0.152978 | 0.0 | 8.395219 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0014860 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0015320 | RBH | 0.0 | 0.0 | 8.862785 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0293600 | SBH | 0.00402 | 0 | 2.25465 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0015530 | RBH | 0.0 | 0.0 | 0.469927 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0303600 | RBH | 0.0083425 | 0.90486 | 6.140133 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0015490 | RBH | 0.025784 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0015430 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0015140 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0014890 | RBH | 0.0 | 0.0 | 0.553151 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0015200 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G015030 | RBH | 0.0 | 0.0 | 0.247378 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0015340 | RBH | 0.0 | 0.0 | 3.826103 |
