Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0014630 | OGI:11051590 | 7/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:19061292-19066039 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcagttcaggcatcgaatccacttattcaggtttggacatttcattatctccaatgtgttgagtccaggcatgaaaccaaccgtactcagttttgggcaattctttagctctagcaccagtagtgagggttgggtagggactgtatttagacctctgcactcttcaatgcatagcttcttaaatgtccgtcctgcagggatagtattaatgccatcacaatcgtgcaaggtcactgtttccaaagaagggaatcgttccaacggaagataactcagtttaaagcaccatttgactgacaatgttttcaggcaagcgaaatctccatcctccacaccagaccattcggaacaccttggcataagaaacatttccaagcttgtcaatgatgggtaggctttgattccagaaacatagctgcaaaactctctgccaatgtgttcaacgaaagacatgctcccaatcttgagggacttgagcaaaggtagctcaccaagtgttggaacatgttgtctctcgcagccactaccagataactctatttcagtaaacactgaaaatgaagcattgccaagccaactagggtagctctgacaatcataattttctattatcagttttctaaggcctgtatgaggtctcaagctctcaagtagatctttatgtggtgatgtaaaaccttcaggtgtcagcatgttttggaactgatgaaatttttcatgccacatttcttcatatgtaaaatccagttccaatcgctcatgggatacttttatgttttgttgtagcatgctcctgcacttctcttctcggcactcccattcatcacaagaaaaatccaatgctaataactggaggtgcgttttactcattagttgaacttcgtttgcatcttcaatatgagataaatcacccaaaccgcttatatgaagctcctttaatttgttcaggttcctcagctctcttaagttaaaactacaaccacaagacctgataaatatgttaggtaaagtgcataggttaattaggaggtctattccacctggtggattctcttgctcttcaagatagtccatatccactgtaagctctaaataacgaagtagttttagggtactgatgtaccttggtaatacctcagtaatgttgctgcaaggcaagctaaggacccgtaaatttttgcagtgtgtaaatagtagttctggatttctaactttgcaatatccttcccgggccaatacaatgatggcccacagagggtgggagaggcaactgagaactgaacagatgtactgcattcaagtatggacataaaccgagtattttgtggaatttgaactggtctgttgccttcgttgccttcaagtataaagaactcatctccagaaagatggcatgccagatcatggattagatcatgcatgatgccacaaccctgaaataattgaagaaacgacctctgaactagttcatcaaaatatcgactcccagtttcgtcctgattccttctttcatcaccatgaattatatcgagcaatttccacagcccgacaacatcaaatttattaagtgtgtaatcttttgggaacagacaaagggcaacaaagcatcgttttaagtgcatgggcatattcttgtagctcaactccaaagctggtaaaacctcattctgtgctttatccaaatcccatagatcactttcaaggacatctatccatctcctttcatcggtctcatatcttaacatgctaccaagagttttgatggccagtggtaatctgtcacattttctaacaatcttcttgccaatgtctacaagattttctggaatgacattgttctgcactgtaattgttctttcaaacaattcccagctcttaaggttgcttaagtggtccatggtgaagtgtggcattgtctgcaccaatctagctactgccacattgcgtgttgttactaaaattttacattgtttggcaaccaacaatggcttacaaaaggtttcccagcaatcccttctttcgttccagacatcatccaaaacaagtaaacatctcttccctcgtatctcgtcggctaacttttcctgaagatcaaccaattctgtcaatgtattgctgtccttcgttatagaaacaacaattttctttgtcaatctcgttgagtcaaaatgatcagacacaaaaacccatgcatagagatcaaatgattggcatactgttgggtcattgtacacgagctgtgctagagttgttttgcccaagcctcccataccaacaattgccaagacagtaaagtgacttggaacattgctactgtgtacagacatcagcatttctattactgtctccttgtctgactcccttccaataatgctttgttcaaccacaaaatagctactgtcacgcacgctttggatagaaggcataatccggtgttccccatcattatgagataggctaaaatgtttatagtagaccttcatctcctcgaatctttgtacaagtttttttgccctgacagccagctgatttgtgactgcgattaatccggcttcagcaaagtgcgcaccattgacctataagagaaaaatgattcttaattttgcggtgtacactagacatatttcgttaattattctcacaacttaacctagaatctattttttttcttgcgcttaaataattaataggtaaagggatcttttacattgctctatctactgtcatgaaagagcaagtacaacatcctaacagttgattattccatctgttgataactaaatttaacatatatacatatggatataagcacaatagttatcttctttatcaatttcctctcaacgaaccgcatgttgacgattttcaacgccaacattatcatttattttgcttcacgtggttgggagtcctaagttatgtaagattcgcgggctttgcatagcctaccttgtgtataaatagagagagagtgggtgtggccttccagtatcatttttagagagagttgagttgagttaaaagttagggtttcgagtttagatcgagattttggtcaggagttttgttagtgtactttgtaaacactagttgatgtaataaagtcgagatatttaatctacaacttggagtttgtcatttactggtgttttctgtgtctcgacgatctgaccgacagcaaggtggcggtctgaccggtggggatacaacggtctaaccgcaggcatcgcggcagtctgactagcggcttggaagtggtttgaccggcaatgacaaagcttcgtcatctactacgttcaaggtaaaccttttattctgcaaaatattttgtgtttttttgttttccctactattcacccccatatggtagtttttgtttagacttgttcaatcctacatatttttcgataatggaagctttattaaaactcagtcaaatacaccaaaatgatacatttaagctgagcccactcgtggcatctgcataagatgcacacagccactcacaaagaaagagctatgaagacccctctcacaaaatagaaatattagtggctatcaatctgtagactagatcgacaaccatgctcctgagtaaaaaactactgtgccacctggtccaaacgtcgcgataccaccacaatagtatcccgaagtgcgaagccaacgggtgactaaagtaatattcaatcctacatatggaacttctcataatattcagaaggttaaagtgctaaatatgaaagaacatgagttgcttgtcccctcatggtctcatctcatcccattcccattgatggaaagatatacatcccgtcgttctcaggaaccgccgggacagcacttcgccaatcccctcggcgcgacagtgaagacactcccccaatccccctcggcatgacaggagcagcgcagcgctcccgcatcctcctcaggcgtgacagcagcgagcagagagggaccagcaaaggcgctcgtccgttgcagcacaacactgagccaatgaccggcccggtgcattcccctcatccccattccgcaaaccaaacccctctcagatttgtcttttccctacctctttgtgtcggcagcgtccggcgcgatccgtgttactccctctatttcaagctataagacttttgactttgatcaaagtcaaactacttcaagtatgactaagtttataaacaaatataataatatttataatataaatttagctccattaaatcaataattgaatatatttttataataaatttgtcttgggttgaaaatgctattgttttttctacaaacttagtcaaactttaaacagtttgactttgaccaaattcaaaacgtcgtcttataacctgaaatgacatttgttgtgaatttacctgatggcgcttacgcttgctgctgttgctagcaccttcgggcctctctggtcgtgcctccagcctccgcaggttcacctcgtactcatattcatccaccacgtcctgtgcaccgtaggccagctccttgagctcactgagccagagcttagaggattcctcgcgaatgttccagtgctcctcggcatccacaagcgtggcatggatcctgcgcatggtcctctccagcatccacaggtcctccaggccgtggctgtgggaggaggacgaggagaaagccacgggcattggcccctccagcgctagcaaggatgagagcttgtcgagcgtccatttcgcagcgatggacgcaaacagcccggccat
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| CDS seq | atggccgggctgtttgcgtccatcgctgcgaaatggacgctcgacaagctctcatccttgctagcgctggaggggccaatgcccgtggctttctcctcgtcctcctcccacagccacggcctggaggacctgtggatgctggagaggaccatgcgcaggatccatgccacgcttgtggatgccgaggagcactggaacattcgcgaggaatcctctaagctctggctcagtgagctcaaggagctggcctacggtgcacaggacgtggtggatgaatatgagtacgaggtcaatggtgcgcactttgctgaagccggattaatcgcagtcacaaatcagctggctgtcagggcaaaaaaacttgtacaaagattcgaggagatgaaggtctactataaacattttagcctatctcataatgatggggaacaccggattatgccttctatccaaagcgtgcgtgacagtagctattttgtggttgaacaaagcattattggaagggagtcagacaaggagacagtaatagaaatgctgatgtctgtacacagtagcaatgttccaagtcactttactgtcttggcaattgttggtatgggaggcttgggcaaaacaactctagcacagctcgtgtacaatgacccaacagtatgccaatcatttgatctctatgcatgggtttttgtgtctgatcattttgactcaacgagattgacaaagaaaattgttgtttctataacgaaggacagcaatacattgacagaattggttgatcttcaggaaaagttagccgacgagatacgagggaagagatgtttacttgttttggatgatgtctggaacgaaagaagggattgctgggaaaccttttgtaagccattgttggttgccaaacaatgtaaaattttagtaacaacacgcaatgtggcagtagctagattggtgcagacaatgccacacttcaccatggaccacttaagcaaccttaagagctgggaattgtttgaaagaacaattacagtgcagaacaatgtcattccagaaaatcttgtagacattggcaagaagattgttagaaaatgtgacagattaccactggccatcaaaactcttggtagcatgttaagatatgagaccgatgaaaggagatggatagatgtccttgaaagtgatctatgggatttggataaagcacagaatgaggttttaccagctttggagttgagctacaagaatatgcccatgcacttaaaacgatgctttgttgccctttgtctgttcccaaaagattacacacttaataaatttgatgttgtcgggctgtggaaattgctcgatataattcatggtgatgaaagaaggaatcaggacgaaactgggagtcgatattttgatgaactagttcagaggtcgtttcttcaattatttcagggttgtggcatcatgcatgatctaatccatgatctggcatgccatctttctggagatgagttctttatacttgaaggcaacgaaggcaacagaccagttcaaattccacaaaatactcggtttatgtccatacttgaatgcagtacatctgttcagttctcagttgcctctcccaccctctgtgggccatcattgtattggcccgggaaggatattgcaaagttagaaatccagaactactatttacacactgcaaaaatttacgggtccttagcttgccttgcagcaacattactgaggtattaccaagagcttacagtggatatggactatcttgaagagcaagagaatccaccaggtggaatagacctcctaattaacctatgcactttacctaacatatttatcaggtcttgtggttgtagttttaacttaagagagctgaggaacctgaacaaattaaaggagcttcatataagcggtttgggtgatttatctcatattgaagatgcaaacgaagttcaactaatgagtaaaacgcacctccagttattagcattggatttttcttgtgatgaatgggagtgccgagaagagaagtgcaggagcatgctacaacaaaacataaaagtatcccatgagcgattggaactggattttacatatgaagaaatgtggcatgaaaaatttcatcagttccaaaacatgctgacacctgaaggttttacatcaccacataaagatctacttgagagcttgagacctcatacaggccttagaaaactgataatagaaaattatgattgtcagagctaccctagttggcttggcaatgcttcattttcagtgtttactgaaatagagttatctggtagtggctgcgagagacaacatgttccaacacttggtgagctacctttgctcaagtccctcaagattgggagcatgtctttcgttgaacacattggcagagagttttgcagctatgtttctggaatcaaagcctacccatcattgacaagcttggaaatgtttcttatgccaaggtgttccgaatggtctggtgtggaggatggagatttcgcttgcctgaaaacattgtcagtcaaatggtgctttaaactgagttatcttccgttggaacgattcccttctttggaaacagtgaccttgcacgattgtgatggcattaatactatccctgcaggacggacatttaagaagctatgcattgaagagtgcagaggtctaaatacagtccctacccaaccctcactactggtgctagagctaaagaattgcccaaaactgagtacggttggtttcatgcctggactcaacacattggagataatgaaatgtccaaacctgaataagtggattcgatgcctgaactga
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| Protein seq | MAGLFASIAAKWTLDKLSSLLALEGPMPVAFSSSSSHSHGLEDLWMLERTMRRIHATLVDAEEHWNIREESSKLWLSELKELAYGAQDVVDEYEYEVNGAHFAEAGLIAVTNQLAVRAKKLVQRFEEMKVYYKHFSLSHNDGEHRIMPSIQSVRDSSYFVVEQSIIGRESDKETVIEMLMSVHSSNVPSHFTVLAIVGMGGLGKTTLAQLVYNDPTVCQSFDLYAWVFVSDHFDSTRLTKKIVVSITKDSNTLTELVDLQEKLADEIRGKRCLLVLDDVWNERRDCWETFCKPLLVAKQCKILVTTRNVAVARLVQTMPHFTMDHLSNLKSWELFERTITVQNNVIPENLVDIGKKIVRKCDRLPLAIKTLGSMLRYETDERRWIDVLESDLWDLDKAQNEVLPALELSYKNMPMHLKRCFVALCLFPKDYTLNKFDVVGLWKLLDIIHGDERRNQDETGSRYFDELVQRSFLQLFQGCGIMHDLIHDLACHLSGDEFFILEGNEGNRPVQIPQNTRFMSILECSTSVQFSVASPTLCGPSLYWPGKDIAKLEIQNYYLHTAKIYGSLACLAATLLRYYQELTVDMDYLEEQENPPGGIDLLINLCTLPNIFIRSCGCSFNLRELRNLNKLKELHISGLGDLSHIEDANEVQLMSKTHLQLLALDFSCDEWECREEKCRSMLQQNIKVSHERLELDFTYEEMWHEKFHQFQNMLTPEGFTSPHKDLLESLRPHTGLRKLIIENYDCQSYPSWLGNASFSVFTEIELSGSGCERQHVPTLGELPLLKSLKIGSMSFVEHIGREFCSYVSGIKAYPSLTSLEMFLMPRCSEWSGVEDGDFACLKTLSVKWCFKLSYLPLERFPSLETVTLHDCDGINTIPAGRTFKKLCIEECRGLNTVPTQPSLLVLELKNCPKLSTVGFMPGLNTLEIMKCPNLNKWIRCLN |
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| Function | Putative disease resistance protein RGA3 [UniProtKB/Swiss-Prot:Q7XA40] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0014630 | OsLima_11g0014630.01 | Chr11 | 19061292 | 19066039 | - | NAM | ||
| CDS seq | atggccgggctgtttgcgtccatcgctgcgaaatggacgctcgacaagctctcatccttgctagcgctggaggggccaatgcccgtggctttctcctcgtcctcctcccacagccacggcctggaggacctgtggatgctggagaggaccatgcgcaggatccatgccacgcttgtggatgccgaggagcactggaacattcgcgaggaatcctctaagctctggctcagtgagctcaaggagctggcctacggtgcacaggacgtggtggatgaatatgagtacgaggtcaatggtgcgcactttgctgaagccggattaatcgcagtcacaaatcagctggctgtcagggcaaaaaaacttgtacaaagattcgaggagatgaaggtctactataaacattttagcctatctcataatgatggggaacaccggattatgccttctatccaaagcgtgcgtgacagtagctattttgtggttgaacaaagcattattggaagggagtcagacaaggagacagtaatagaaatgctgatgtctgtacacagtagcaatgttccaagtcactttactgtcttggcaattgttggtatgggaggcttgggcaaaacaactctagcacagctcgtgtacaatgacccaacagtatgccaatcatttgatctctatgcatgggtttttgtgtctgatcattttgactcaacgagattgacaaagaaaattgttgtttctataacgaaggacagcaatacattgacagaattggttgatcttcaggaaaagttagccgacgagatacgagggaagagatgtttacttgttttggatgatgtctggaacgaaagaagggattgctgggaaaccttttgtaagccattgttggttgccaaacaatgtaaaattttagtaacaacacgcaatgtggcagtagctagattggtgcagacaatgccacacttcaccatggaccacttaagcaaccttaagagctgggaattgtttgaaagaacaattacagtgcagaacaatgtcattccagaaaatcttgtagacattggcaagaagattgttagaaaatgtgacagattaccactggccatcaaaactcttggtagcatgttaagatatgagaccgatgaaaggagatggatagatgtccttgaaagtgatctatgggatttggataaagcacagaatgaggttttaccagctttggagttgagctacaagaatatgcccatgcacttaaaacgatgctttgttgccctttgtctgttcccaaaagattacacacttaataaatttgatgttgtcgggctgtggaaattgctcgatataattcatggtgatgaaagaaggaatcaggacgaaactgggagtcgatattttgatgaactagttcagaggtcgtttcttcaattatttcagggttgtggcatcatgcatgatctaatccatgatctggcatgccatctttctggagatgagttctttatacttgaaggcaacgaaggcaacagaccagttcaaattccacaaaatactcggtttatgtccatacttgaatgcagtacatctgttcagttctcagttgcctctcccaccctctgtgggccatcattgtattggcccgggaaggatattgcaaagttagaaatccagaactactatttacacactgcaaaaatttacgggtccttagcttgccttgcagcaacattactgaggtattaccaagagcttacagtggatatggactatcttgaagagcaagagaatccaccaggtggaatagacctcctaattaacctatgcactttacctaacatatttatcaggtcttgtggttgtagttttaacttaagagagctgaggaacctgaacaaattaaaggagcttcatataagcggtttgggtgatttatctcatattgaagatgcaaacgaagttcaactaatgagtaaaacgcacctccagttattagcattggatttttcttgtgatgaatgggagtgccgagaagagaagtgcaggagcatgctacaacaaaacataaaagtatcccatgagcgattggaactggattttacatatgaagaaatgtggcatgaaaaatttcatcagttccaaaacatgctgacacctgaaggttttacatcaccacataaagatctacttgagagcttgagacctcatacaggccttagaaaactgataatagaaaattatgattgtcagagctaccctagttggcttggcaatgcttcattttcagtgtttactgaaatagagttatctggtagtggctgcgagagacaacatgttccaacacttggtgagctacctttgctcaagtccctcaagattgggagcatgtctttcgttgaacacattggcagagagttttgcagctatgtttctggaatcaaagcctacccatcattgacaagcttggaaatgtttcttatgccaaggtgttccgaatggtctggtgtggaggatggagatttcgcttgcctgaaaacattgtcagtcaaatggtgctttaaactgagttatcttccgttggaacgattcccttctttggaaacagtgaccttgcacgattgtgatggcattaatactatccctgcaggacggacatttaagaagctatgcattgaagagtgcagaggtctaaatacagtccctacccaaccctcactactggtgctagagctaaagaattgcccaaaactgagtacggttggtttcatgcctggactcaacacattggagataatgaaatgtccaaacctgaataagtggattcgatgcctgaactga
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| Protein seq | MAGLFASIAAKWTLDKLSSLLALEGPMPVAFSSSSSHSHGLEDLWMLERTMRRIHATLVDAEEHWNIREESSKLWLSELKELAYGAQDVVDEYEYEVNGAHFAEAGLIAVTNQLAVRAKKLVQRFEEMKVYYKHFSLSHNDGEHRIMPSIQSVRDSSYFVVEQSIIGRESDKETVIEMLMSVHSSNVPSHFTVLAIVGMGGLGKTTLAQLVYNDPTVCQSFDLYAWVFVSDHFDSTRLTKKIVVSITKDSNTLTELVDLQEKLADEIRGKRCLLVLDDVWNERRDCWETFCKPLLVAKQCKILVTTRNVAVARLVQTMPHFTMDHLSNLKSWELFERTITVQNNVIPENLVDIGKKIVRKCDRLPLAIKTLGSMLRYETDERRWIDVLESDLWDLDKAQNEVLPALELSYKNMPMHLKRCFVALCLFPKDYTLNKFDVVGLWKLLDIIHGDERRNQDETGSRYFDELVQRSFLQLFQGCGIMHDLIHDLACHLSGDEFFILEGNEGNRPVQIPQNTRFMSILECSTSVQFSVASPTLCGPSLYWPGKDIAKLEIQNYYLHTAKIYGSLACLAATLLRYYQELTVDMDYLEEQENPPGGIDLLINLCTLPNIFIRSCGCSFNLRELRNLNKLKELHISGLGDLSHIEDANEVQLMSKTHLQLLALDFSCDEWECREEKCRSMLQQNIKVSHERLELDFTYEEMWHEKFHQFQNMLTPEGFTSPHKDLLESLRPHTGLRKLIIENYDCQSYPSWLGNASFSVFTEIELSGSGCERQHVPTLGELPLLKSLKIGSMSFVEHIGREFCSYVSGIKAYPSLTSLEMFLMPRCSEWSGVEDGDFACLKTLSVKWCFKLSYLPLERFPSLETVTLHDCDGINTIPAGRTFKKLCIEECRGLNTVPTQPSLLVLELKNCPKLSTVGFMPGLNTLEIMKCPNLNKWIRCLN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.035129 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0492300 | SBH | 0.187514 | 0.0 | 0.229153 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g29990 | SBH | 0.000000 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0492300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0014500 | SBH | 0.373027 | 0.0 | 0.207665 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0014500 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0014400 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0014240 | SBH | 0.0 | 0.263177 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0014470 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0271200 | SBH | 5.5113565 | 1.582145 | 4.944744 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0014740 | SBH | 0.094940 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0284200 | RBH | 0 | 0.945128 | 0.040023 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0014710 | SBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0014620 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0014260 | RBH | 0.0 | 6.695925 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0014180 | SBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0014350 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G014150 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0014380 | SBH | 0.000000 | 0.0 | 0.0 |
