Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0009120 | OGI:11023570 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:8203970-8207521 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | caccaaaataaaatgtatatattacaacatacattttgcatgaacttatatgtagtgttggaaagcagaacaaataatataaatttgatgacgtcataccatatcaaggagatcagtcttgaaagtcttacccaaacgaaatctgagcttcacgacaggccactcacctagcagcttagtgagaatgggcagtaaaaccgaaaggaaacaaattccaacagctaaccacagcattcgtggggccaacacggtgtataaacccgttgcaaacgctatagtggtcgccatgtatgcaaaccacataagcttcttcgtaaaggatctgtagtaaagcaagaattcaagatcctcccaccttgctatgatgcatatgaatgcgacggcaagcgaggagcacattgctacggtgtcagagaccaagaatgcttgaaacgctaacttccttgccatgacaggaagtccctcgcttccagaatcgttgctgtatcccccaggcagggtgaaggctgcggcaaaggttatcgtcgccatgagaatagccactagcgaagtgttgcttgtgtatgtttgagtgagtgacttaacattccttgctaattcatcagttagtcgtttccttgcgaactgacggtgaagcgtggttgcagcttcaggatcagctttagtcataagcatggacacttcattctgcagtataaaagtaagggataattagatccataccattacaaattctttggtttgaaaatatgttattactattcacatatttagaatcatgcaattatattttttcagttatattattccagaaaaaatattttttcagttatttgaaatatgccactactatacatacacattccatgcatctaaatggcgtaagattgactagtatcttgtctgaagtttatgaaagttcaggattgtaaagtagacatattttcaatataataggggaatacatgcaatttccaatccaaagaaagatgttatttaaacttcggtaaattgtaatcaataccttggtttttaaaattgtttgtcaaaaaaaaatcgactacacgatttttgtttgggaaactgcttatagaatacctaaaaaacatctcccatccccacgaccgtttgatatgccttgtgcaaaatgcctctaatagcgtgcctctacatgagatttgtgttctagtgatttgcatgttcatgagggcaaagtgatacaggtcataaaactgaatgaaaacaaaacaaaaaaaaaagagattgtgggggcagcatgccttccataacactcaactagattttttttttcattttattgctttccttcaattctcattttttttatcctgaattagctgcattcactttatgtatttcttcttcaaaaggtctatacgtaggtgtatacacgaagcgttatgaaggtagctagttgcaacatacccagtttaaagtcttggcacgctctgaacccaaacataattgccaaattactgactggccagttttgtgatcattcagtgtgaagtctgtgtctttatgagacaacaacgaggcaacaattttaggattgcacatccggacagcttgatgcagagcagtttgtccgtccttgttatttcgcatgttgatgagcttacgaagttgtggtgtccttaggataaattccacaaactctgtctgaccttcctttacagcttcatgaaggcatgtccaaccatttctgtcgcaatagggagcatctggacagtggttaagaagctcttgagcaacatcaacatgacctcgatatgcagcagcaacaagaagagggctcagattaccaccatcatcatagcattcataccctaaaagcacatcatgttccaacaacacacgaagcacgtctatcttgtcccaaattaccgtcatcaggattggggtcttcctctctctggttcgttctttccccagccaaggacgaccctccaaaatttttttagccataactgaaaacaaatcgaggcagcaatttgcttgttaacaaaccaaaggaatgacgaataatattgggcacatagtaaagaatctaatttcctgcacaagattgagttgtaaaaatagtgttgccagtttttctgaaataataaataaataatacgcccaatttagtccatagtccatataattctcacccgcatttccatttctcacagtagcatgcaaggcattgtggccatatgttccaacatggctagatccaggaattcccaacagtttctcagaaacatctgtaaaatctctcattaccgcgatgaacattggtgactcactgtatttgttcacagcttttgatagggcaggctcttttaatatcaattccagtgcaaggtccttgtgaccacaatgaatggcatggtgcagtgcattacaaccatttctgtcttgttgcaagattgcctcactgaaccctagtgtgcagcagcattcaagtagaatagaggccaaagacaagtgtccatttgtcacggcagtgagcagtggtgtctcaccatccatgtttgcgacagtgagaagagaattgtttagcgtcagcacatccttgcaaaatccctcatggccatggatggaggagatgtggaggcaggtgttcccttgaggagttgttccaagcagcaggcttggatcctgtgcagccatctccttcattgatgtggcactgccaaccatggctgcctccaggagctgcctctccatctgagctcctggcaaactagctgtagctatactggctgacatccatatattaaaacaaaatgaaaaaaaaaagtatagtttttacaaatgatccactagttttgcaatacacaattcccaactatttgctgcaaaaaagaaaacaaggatatcatctattcactgaataattaagaattagagtagtacctggcagtagtactatttcacccaagggataccacccgaccaactttgatagatccaacaaatcccagcaacggtttaacacttgcccagcctaataatcgcactgtctcttatagaggcaaagcaaaactgcctcccctgcctgacaaagcaaaaaggagctaaaggggagaaaaagctagctgcctagcatcgagaatggatcgtgctcccggagctaaggcacctgcaaaacgtccattgattcttttcttggttgatgcgcaagactgggaacctaaataaagatgcagagatattgtgaaattaacctggaaaagaagcacaagaaaacttggcagttggcaatttggcatcacttcagtatgccatcgttcttgtcaagaaactgctgcacgtacggtacggcgacaccggggaaggcgaggagctccttggccatggtaggagcgatgatggccgccgcggccggccggtctactcggtgttgaggacgatgcgctcagacctcgccgatctgctgtgtgcgccgaggggaggcgcggaggcggctcgtggttgccggtggtcggccgagctgattaaattgggaggtgaaagcatcggtgccgctgtgaacgagat
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| CDS seq | atggagaggcagctcctggaggcagccatggttggcagtgccacatcaatgaaggagatggctgcacaggatccaagcctgctgcttggaacaactcctcaagggaacacctgcctccacatctcctccatccatggccatgagggattttgcaaggatgtgctgacgctaaacaattctcttctcactgtcgcaaacatggatggtgagacaccactgctcactgccgtgacaaatggacacttgtctttggcctctattctacttgaatgctgctgcacactagggttcagtgaggcaatcttgcaacaagacagaaatggttgtaatgcactgcaccatgccattcattgtggtcacaaggaccttgcactggaattgatattaaaagagcctgccctatcaaaagctgtgaacaaatacagtgagtcaccaatgttcatcgcggtaatgagagattttacagatgtttctgagaaactgttgggaattcctggatctagccatgttggaacatatggccacaatgccttgcatgctactgtgagaaatggaaatgcggttatggctaaaaaaattttggagggtcgtccttggctggggaaagaacgaaccagagagaggaagaccccaatcctgatgacggtaatttgggacaagatagacgtgcttcgtgtgttgttggaacatgatgtgcttttagggtatgaatgctatgatgatggtggtaatctgagccctcttcttgttgctgctgcatatcgaggtcatgttgatgttgctcaagagcttcttaaccactgtccagatgctccctattgcgacagaaatggttggacatgccttcatgaagctgtaaaggaaggtcagacagagtttgtggaatttatcctaaggacaccacaacttcgtaagctcatcaacatgcgaaataacaaggacggacaaactgctctgcatcaagctgtccggatgtgcaatcctaaaattgttgcctcgttgttgtctcataaagacacagacttcacactgaatgatcacaaaactggccagtcagtaatttggcaattatgtttgggttcagagcgtgccaagactttaaactggtcactcactcaaacatacacaagcaacacttcgctagtggctattctcatggcgacgataacctttgccgcagccttcaccctgcctgggggatacagcaacgattctggaagcgagggacttcctgtcatggcaaggaagttagcgtttcaagcattcttggtctctgacaccgtagcaatgtgctcctcgcttgccgtcgcattcatatgcatcatagcaaggtgggaggatcttgaattcttgctttactacagatcctttacgaagaagcttatgtggtttgcatacatggcgaccactatagcgtttgcaacgggtttatacaccgtgttggccccacgaatgctgtggttagctgttggaatttgtttcctttcggttttactgcccattctcactaagctgctaggtgagtggcctgtcgtgaagctcagatttcgtttgggtaagactttcaagactgatctccttgatatggtatga
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| Protein seq | MERQLLEAAMVGSATSMKEMAAQDPSLLLGTTPQGNTCLHISSIHGHEGFCKDVLTLNNSLLTVANMDGETPLLTAVTNGHLSLASILLECCCTLGFSEAILQQDRNGCNALHHAIHCGHKDLALELILKEPALSKAVNKYSESPMFIAVMRDFTDVSEKLLGIPGSSHVGTYGHNALHATVRNGNAVMAKKILEGRPWLGKERTRERKTPILMTVIWDKIDVLRVLLEHDVLLGYECYDDGGNLSPLLVAAAYRGHVDVAQELLNHCPDAPYCDRNGWTCLHEAVKEGQTEFVEFILRTPQLRKLINMRNNKDGQTALHQAVRMCNPKIVASLLSHKDTDFTLNDHKTGQSVIWQLCLGSERAKTLNWSLTQTYTSNTSLVAILMATITFAAAFTLPGGYSNDSGSEGLPVMARKLAFQAFLVSDTVAMCSSLAVAFICIIARWEDLEFLLYYRSFTKKLMWFAYMATTIAFATGLYTVLAPRMLWLAVGICFLSVLLPILTKLLGEWPVVKLRFRLGKTFKTDLLDMV |
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| Function | Ankyrin repeat-containing protein NPR4 [UniProtKB/Swiss-Prot:A2CIR5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0009120 | OsLima_11g0009120.01 | Chr11 | 8204063 | 8207521 | - | NAM | ||
| CDS seq | atggagaggcagctcctggaggcagccatggttggcagtgccacatcaatgaaggagatggctgcacaggatccaagcctgctgcttggaacaactcctcaagggaacacctgcctccacatctcctccatccatggccatgagggattttgcaaggatgtgctgacgctaaacaattctcttctcactgtcgcaaacatggatggtgagacaccactgctcactgccgtgacaaatggacacttgtctttggcctctattctacttgaatgctgctgcacactagggttcagtgaggcaatcttgcaacaagacagaaatggttgtaatgcactgcaccatgccattcattgtggtcacaaggaccttgcactggaattgatattaaaagagcctgccctatcaaaagctgtgaacaaatacagtgagtcaccaatgttcatcgcggtaatgagagattttacagatgtttctgagaaactgttgggaattcctggatctagccatgttggaacatatggccacaatgccttgcatgctactgtgagaaatggaaatgcggttatggctaaaaaaattttggagggtcgtccttggctggggaaagaacgaaccagagagaggaagaccccaatcctgatgacggtaatttgggacaagatagacgtgcttcgtgtgttgttggaacatgatgtgcttttagggtatgaatgctatgatgatggtggtaatctgagccctcttcttgttgctgctgcatatcgaggtcatgttgatgttgctcaagagcttcttaaccactgtccagatgctccctattgcgacagaaatggttggacatgccttcatgaagctgtaaaggaaggtcagacagagtttgtggaatttatcctaaggacaccacaacttcgtaagctcatcaacatgcgaaataacaaggacggacaaactgctctgcatcaagctgtccggatgtgcaatcctaaaattgttgcctcgttgttgtctcataaagacacagacttcacactgaatgatcacaaaactggccagtcagtaatttggcaattatgtttgggttcagagcgtgccaagactttaaactggtcactcactcaaacatacacaagcaacacttcgctagtggctattctcatggcgacgataacctttgccgcagccttcaccctgcctgggggatacagcaacgattctggaagcgagggacttcctgtcatggcaaggaagttagcgtttcaagcattcttggtctctgacaccgtagcaatgtgctcctcgcttgccgtcgcattcatatgcatcatagcaaggtgggaggatcttgaattcttgctttactacagatcctttacgaagaagcttatgtggtttgcatacatggcgaccactatagcgtttgcaacgggtttatacaccgtgttggccccacgaatgctgtggttagctgttggaatttgtttcctttcggttttactgcccattctcactaagctgctaggtgagtggcctgtcgtgaagctcagatttcgtttgggtaagactttcaagactgatctccttgatatggtatga
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| Protein seq | MERQLLEAAMVGSATSMKEMAAQDPSLLLGTTPQGNTCLHISSIHGHEGFCKDVLTLNNSLLTVANMDGETPLLTAVTNGHLSLASILLECCCTLGFSEAILQQDRNGCNALHHAIHCGHKDLALELILKEPALSKAVNKYSESPMFIAVMRDFTDVSEKLLGIPGSSHVGTYGHNALHATVRNGNAVMAKKILEGRPWLGKERTRERKTPILMTVIWDKIDVLRVLLEHDVLLGYECYDDGGNLSPLLVAAAYRGHVDVAQELLNHCPDAPYCDRNGWTCLHEAVKEGQTEFVEFILRTPQLRKLINMRNNKDGQTALHQAVRMCNPKIVASLLSHKDTDFTLNDHKTGQSVIWQLCLGSERAKTLNWSLTQTYTSNTSLVAILMATITFAAAFTLPGGYSNDSGSEGLPVMARKLAFQAFLVSDTVAMCSSLAVAFICIIARWEDLEFLLYYRSFTKKLMWFAYMATTIAFATGLYTVLAPRMLWLAVGICFLSVLLPILTKLLGEWPVVKLRFRLGKTFKTDLLDMV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0009120 | OsLima_11g0009120.02 | Chr11 | 8204063 | 8207339 | - | NAM | ||
| CDS seq | atggagaggcagctcctggaggcagccatggttggcagtgccacatcaatgaaggagatggctgcacaggatccaagcctgctgcttggaacaactcctcaagggaacacctgcctccacatctcctccatccatggccatgagggattttgcaaggatgtgctgacgctaaacaattctcttctcactgtcgcaaacatggatggtgagacaccactgctcactgccgtgacaaatggacacttgtctttggcctctattctacttgaatgctgctgcacactagggttcagtgaggcaatcttgcaacaagacagaaatggttgtaatgcactgcaccatgccattcattgtggtcacaaggaccttgcactggaattgatattaaaagagcctgccctatcaaaagctgtgaacaaatacagtgagtcaccaatgttcatcgcggtaatgagagattttacagatgtttctgagaaactgttgggaattcctggatctagccatgttggaacatatggccacaatgccttgcatgctactgtgagaaatggaaatgcggttatggctaaaaaaattttggagggtcgtccttggctggggaaagaacgaaccagagagaggaagaccccaatcctgatgacggtaatttgggacaagatagacgtgcttcgtgtgttgttggaacatgatgtgcttttagggtatgaatgctatgatgatggtggtaatctgagccctcttcttgttgctgctgcatatcgaggtcatgttgatgttgctcaagagcttcttaaccactgtccagatgctccctattgcgacagaaatggttggacatgccttcatgaagctgtaaaggaaggtcagacagagtttgtggaatttatcctaaggacaccacaacttcgtaagctcatcaacatgcgaaataacaaggacggacaaactgctctgcatcaagctgtccggatgtgcaatcctaaaattgttgcctcgttgttgtctcataaagacacagacttcacactgaatgatcacaaaactggccagtcagtaatttggcaattatgtttgggttcagagcgtgccaagactttaaactggtcactcactcaaacatacacaagcaacacttcgctagtggctattctcatggcgacgataacctttgccgcagccttcaccctgcctgggggatacagcaacgattctggaagcgagggacttcctgtcatggcaaggaagttagcgtttcaagcattcttggtctctgacaccgtagcaatgtgctcctcgcttgccgtcgcattcatatgcatcatagcaaggtgggaggatcttgaattcttgctttactacagatcctttacgaagaagcttatgtggtttgcatacatggcgaccactatagcgtttgcaacgggtttatacaccgtgttggccccacgaatgctgtggttagctgttggaatttgtttcctttcggttttactgcccattctcactaagctgctaggtgagtggcctgtcgtgaagctcagatttcgtttgggtaagactttcaagactgatctccttgatatggtatga
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| Protein seq | MERQLLEAAMVGSATSMKEMAAQDPSLLLGTTPQGNTCLHISSIHGHEGFCKDVLTLNNSLLTVANMDGETPLLTAVTNGHLSLASILLECCCTLGFSEAILQQDRNGCNALHHAIHCGHKDLALELILKEPALSKAVNKYSESPMFIAVMRDFTDVSEKLLGIPGSSHVGTYGHNALHATVRNGNAVMAKKILEGRPWLGKERTRERKTPILMTVIWDKIDVLRVLLEHDVLLGYECYDDGGNLSPLLVAAAYRGHVDVAQELLNHCPDAPYCDRNGWTCLHEAVKEGQTEFVEFILRTPQLRKLINMRNNKDGQTALHQAVRMCNPKIVASLLSHKDTDFTLNDHKTGQSVIWQLCLGSERAKTLNWSLTQTYTSNTSLVAILMATITFAAAFTLPGGYSNDSGSEGLPVMARKLAFQAFLVSDTVAMCSSLAVAFICIIARWEDLEFLLYYRSFTKKLMWFAYMATTIAFATGLYTVLAPRMLWLAVGICFLSVLLPILTKLLGEWPVVKLRFRLGKTFKTDLLDMV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0009120 | OsLima_11g0009120.03 | Chr11 | 8203970 | 8207449 | - | IsoSeq | ||
| CDS seq | ccgcctccgcgcctcccctcggcgcacacagcagatcggcgaggtctgagcgcatcgtcctcaacaccgagtagaccggccggccgcggcggccatcatcgctcctaccatggccaaggagctcctcgccttccccggtgtcgccgtaccgtacgtgcagcagtt |
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| Protein seq | PPPRLPSAHTADRRGLSASSSTPSRPAGRGGHHRSYHGQGAPRLPRCRRTVRAAV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr11 | 8204548 | 8205416 | - | OsLima_11g0009120.03 | OsLima_11g0009120.02,OsLima_11g0009120.03,OsLima_11g0009120.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.036082 | 0.052922 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0252400 | RBH | 0.307645 | 0.404049 | 30.317059 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g14570 | RBH | 0.179901 | 0.184715 | 6.899702 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0252400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0009230 | RBH | 0.000000 | 17.342962 | 54.168758 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0009120 | RBH | 0.110698 | 0.000000 | 24.216803 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0009150 | RBH | 0.526214 | 3.206896 | 60.267441 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0008970 | RBH | 0.080717 | 0.024619 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0009040 | RBH | 0.821049 | 0.0 | 88.210884 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0123400 | RBH | 2.7790365 | 3.9994535 | 3.3207335 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0009040 | RBH | 0.0 | 0.0 | 2.220248 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0126100 | RBH | 5.6626315 | 6.751519 | 15.9287985 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0009530 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0009230 | RBH | 0.086242 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0009110 | RBH | 1.058168 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0009000 | RBH | 0.096691 | 0.0 | 0.657458 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0009130 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G009210 | RBH | 0.069837 | 0.0 | 16.538034 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0009030 | RBH | 0.000000 | 0.0 | 3.962668 |
