Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsARC_11g0008970 OGI:11023570 | 16/16 ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) Chr11:7810036-7813683
Gene Symbol -
DNA seq

AAAAAAATAATTATGTCTTATATTTTGAGATAGAGGGAGTAACTCATAAATATTGTCTCTGGTATAATCGTCTCCAACTCTCCATGATATCTTCTAGACATATCACCAAAATAAAATGTATATATTACAACATACATTTTGCATGAACTTATATGTAGTGTTGGAAAGCAGAACAAATAATATAAATTTGATGACGTCATACCATATCAAGGAGATCAGTCTTGAAAGTCTTACCCAAACGAAATCTGAGCTTCACGACAGGCCACTCACCTAGCAGCTTAGTGAGAATGGGCAGTAAAACCGAAAGGAAACAAATTCCAACAGCTAACCACAGCATTCGTGGGGCCAACACGGTGTATAAACCCGTTGCAAACGCTATAGTGGTCGCCATGTATGCAAACCACATAAGCTTCTTCGTAAAGGATCTGTAGTAAAGCAAGAATTCAAGATCCTCCCACCTTGCTAGGATGCATATGAATGCGACGGCAAGCGAGGAGCACATTGCTACGGTGTCAGAGATCAAGAATGCTTGAAACGCTAACTTCTTTGCCATGACAGGAAGTCCCTCGCTTCCAGAATCGTTGCTGTATCCCCCAGGCAGGGTGAAGGCTGCGGCAAAGGTTATCGTCGCCATGAGAATAGCCACTAGCGAAGTGTTGCTTGTGTATGTTTGAGTGAGTGACTTAACATTCCTTGCTAATTCATCAGTTAGTCGTTTCCTTGCGAACTGACGGTGAAGCGTGGTTGCAGCTTCAGGATCAGCTTTAGTCATAAGCATGGACACTTCATTCTGCAGTATAAAAGTAAGGGTTAATTAGATCCATACCATTACAAATTCTTTGGTTTGAAAATATGTTATTACTATTCACATATTTAGAATCATGTAATTATAATTTTTCAGTTATATTATTCCAAAAAAAATATTTTTTCATTTATTTGAAATATGCCACTACTATACATACCCATTCCATGCATCTAAATGGCGTAAGATTGACTAGTATCTTGTTTGAAGTTTATGAAAGTTCAGGATTGTAAAGTAGACATATTTTCAATATAATAGGGGAATACATGCAATTTCCAATCCAAAGAAAGATGTTATTTAAACTTCGGTAAATAGTAATCAATACCTTGGTTTTTAAAATTGTTTGTCAAAAAAAATCGACTACACGATTTTTGTTTGGGAAACTGCTTATACAATACCTAAAAAACATCTCCCATCCCACGACCGTTTGATATGCCTTGTGCAAAATGCCTCTAATAGCGTGCCTCTACATGAGATTTGTGTTCTAGTGATTTGCATGTTCATGAGGGCAAAGTGATACAGGTCATAAAACTGAATGAAAACAAAAAAAAATGAAATTGTGGGGGCAGCATGCCTTCCATAACACTCAACTAGATTTTTTTTTCATTTTATTGCTTTCCTTCAATTCTCATTTTTTTTATCCTGAATTAGCTGCATTCACTTTATGTATTTCTTCTTCAAAAGGTCTATACGTAGGTGTATACACGAAGCGTTATGAAGGTAGCTAGTTGCAACATACCCAGTTTAAAGTCTTGGCACGCTCTGAACCCAAACATAATTGCCAAATTACTGACTGGCCAGTTTTGTGATCATTCAGTGTGAAGTCTGTGTCTTTATGAGACAACAACGAGGCAACAATTTTAGGATTGCACATCCGGACAGCTTGATGCAGAGCAGTTTGTCCGTCCTTGTTATTTCGCATGTTGATGAGCTTACGAAGTTGTGGTGTCCTTAGGATAAATTCCACAAACTCTGTCTGACCTTCCTTTACAGCTTCATGAAGGCATGTCCAACCATTTCTGTCGCAATAGGGAGCATCTGGACAGTGGTTAAGAAGCTCTTGAGCAACATCAACATGACCTCGATATGCAGCAGCAACAAGAAGAGGGCTCAGATTACCACCATCATCATAGCATTCATACCCTAAAAGCACATCATGTTCCAACAACACACGAAGCACGTCTATCTTGTCCCAAATTACCGTCATCAGGATTGGGGTCTTCCTCTCTCTGGTTCGTTCTTTCCCCAGCCAAGGACGACCCTCCAAAATTTTTTTAGCCATAACTGAAAACAAATCGAGGCAGCAATTTGCTTGTTAACAAACCAAAGGAATGACGAATAATATTGGGCACATAGTAAAGAATCTAATTTCCTGCACAAGATTGAGTTGTAAAAATAGTGTTGCCAGTTTTTCTGAAATAATAAATAAATAATACGCCCAATTTAGTCCATAGTCCATATAATTCTCACCTGCATTTCCATTTCTCACAGTAGCATGCAAGGCATTGTGGCCATATGTTCCAACATGGCTAGATCCAGGAATTCCCAACAGTTTCTCAGAAACATCTGTAAAATCTCTCATTACCGCGATGAACATTGGTGACTCACTGTATTTGTTCACAGCTTTTGATAGGGCAGGCTCTTTTAATATCAATTCCAGTGCAAGGTCCTTGTGACCACAATGAATGGCATGGTGCAGTGCATTACAACCATTTCTGTCTTGTTGCAAGATTGCCTCACTGAACCCTAGTGTGCAGCAGCATTCAAGTAGAATAGAGGCCAAAGACATGTGTCCATTTGTCACGGCAGTGAGCAGTGGTGTCTCACCATCCATGTTTGCGACAGTGAGAAGAGAATTGTTTAGCGTCAGCACATCCTTGCAAAATCCCTCATGGCCATGGATGGAGGAGATGTGGAGGCAGGTGTTCCCTTGAGGAGTTGTTCCAAGCAGCAGGCTTGGATCCTGTGCAGCCATCTCCTTCATTGATGTGGCACTGCCAACCATGGCTGCCTCCAGGAGCCGCCTCTCCATCTGAGCTCCTGGCAAACTAGCTGTATAGCTATACTGGCTGACATCCATATATTAAAACAAAATGAAAAAAAAAGTATAGTTTTTACAAATGATCCACTAGTTTTGCAATACACAATTCCCAACTATTTGCTGCAAAAAAGAAAACAAGGATATCATCTATTCACTGAATAATTAAGAATTAGAGTAGTACCTGGCAGTAGTACTATTTCACCCAAGAGATACCACCCGACCAACTTTGATAGATCCAACAAATCCCAGCAACGGTTTAACACTTGCCCAGCCTAATAATCGCACTGTCTCTTATAGAGGCAAAGCAAAACTGCCTCCCCTGCCTGACAAAGCAAAAAGGAGCTAAAGGGGAGAAAAAGCTAACTGCCTAGCATCGAGAATGGATCGTGCTCCCGGAGCTAAGGCACCTGCAAAACGTCCATTGATTCTTTTCTTGGTTGATGCGCAAGACTGGGAACCTAAATAAAGATGCAGAGATATTGTGAAATTAACCTGGAAAAGAAGCACAAGAAAACTTGGCAGTTGGCAATTTGGCATCACTTCAGTATGCCATCGTTCTTGTCAAGAAACTGCTGCACGTACGGTACGGCGACACCGGGGAAGGCGAGGAGCTCCTTGGCCATGGTAGGAGCGATGATGGCCGCCGCGGCCGGCCGGTCTACTCGGTGTTGAGGACGATGCGCTCAGACCTCGCCGATCTGCTGTGTGCGCCGAGGGGAGGCGCGGAGGCGGCTCGTGGTTGCCGGTGGTCGGCCGAGCTGATTAAATTGGGAGGTGAAAGCATCGGTGCCGCTGTGAACGAGAT

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CDS seq

ATGGAGAGGCGGCTCCTGGAGGCAGCCATGGTTGGCAGTGCCACATCAATGAAGGAGATGGCTGCACAGGATCCAAGCCTGCTGCTTGGAACAACTCCTCAAGGGAACACCTGCCTCCACATCTCCTCCATCCATGGCCATGAGGGATTTTGCAAGGATGTGCTGACGCTAAACAATTCTCTTCTCACTGTCGCAAACATGGATGGTGAGACACCACTGCTCACTGCCGTGACAAATGGACACATGTCTTTGGCCTCTATTCTACTTGAATGCTGCTGCACACTAGGGTTCAGTGAGGCAATCTTGCAACAAGACAGAAATGGTTGTAATGCACTGCACCATGCCATTCATTGTGGTCACAAGGACCTTGCACTGGAATTGATATTAAAAGAGCCTGCCCTATCAAAAGCTGTGAACAAATACAGTGAGTCACCAATGTTCATCGCGGTAATGAGAGATTTTACAGATGTTTCTGAGAAACTGTTGGGAATTCCTGGATCTAGCCATGTTGGAACATATGGCCACAATGCCTTGCATGCTACTGTGAGAAATGGAAATGCAGTTATGGCTAAAAAAATTTTGGAGGGTCGTCCTTGGCTGGGGAAAGAACGAACCAGAGAGAGGAAGACCCCAATCCTGATGACGGTAATTTGGGACAAGATAGACGTGCTTCGTGTGTTGTTGGAACATGATGTGCTTTTAGGGTATGAATGCTATGATGATGGTGGTAATCTGAGCCCTCTTCTTGTTGCTGCTGCATATCGAGGTCATGTTGATGTTGCTCAAGAGCTTCTTAACCACTGTCCAGATGCTCCCTATTGCGACAGAAATGGTTGGACATGCCTTCATGAAGCTGTAAAGGAAGGTCAGACAGAGTTTGTGGAATTTATCCTAAGGACACCACAACTTCGTAAGCTCATCAACATGCGAAATAACAAGGACGGACAAACTGCTCTGCATCAAGCTGTCCGGATGTGCAATCCTAAAATTGTTGCCTCGTTGTTGTCTCATAAAGACACAGACTTCACACTGAATGATCACAAAACTGGCCAGTCAGTAATTTGGCAATTATGTTTGGGTTCAGAGCGTGCCAAGACTTTAAACTGGTCACTCACTCAAACATACACAAGCAACACTTCGCTAGTGGCTATTCTCATGGCGACGATAACCTTTGCCGCAGCCTTCACCCTGCCTGGGGGATACAGCAACGATTCTGGAAGCGAGGGACTTCCTGTCATGGCAAAGAAGTTAGCGTTTCAAGCATTCTTGATCTCTGACACCGTAGCAATGTGCTCCTCGCTTGCCGTCGCATTCATATGCATCCTAGCAAGGTGGGAGGATCTTGAATTCTTGCTTTACTACAGATCCTTTACGAAGAAGCTTATGTGGTTTGCATACATGGCGACCACTATAGCGTTTGCAACGGGTTTATACACCGTGTTGGCCCCACGAATGCTGTGGTTAGCTGTTGGAATTTGTTTCCTTTCGGTTTTACTGCCCATTCTCACTAAGCTGCTAGGTGAGTGGCCTGTCGTGAAGCTCAGATTTCGTTTGGGTAAGACTTTCAAGACTGATCTCCTTGATATGGTATGA

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Protein seq

MERRLLEAAMVGSATSMKEMAAQDPSLLLGTTPQGNTCLHISSIHGHEGFCKDVLTLNNSLLTVANMDGETPLLTAVTNGHMSLASILLECCCTLGFSEAILQQDRNGCNALHHAIHCGHKDLALELILKEPALSKAVNKYSESPMFIAVMRDFTDVSEKLLGIPGSSHVGTYGHNALHATVRNGNAVMAKKILEGRPWLGKERTRERKTPILMTVIWDKIDVLRVLLEHDVLLGYECYDDGGNLSPLLVAAAYRGHVDVAQELLNHCPDAPYCDRNGWTCLHEAVKEGQTEFVEFILRTPQLRKLINMRNNKDGQTALHQAVRMCNPKIVASLLSHKDTDFTLNDHKTGQSVIWQLCLGSERAKTLNWSLTQTYTSNTSLVAILMATITFAAAFTLPGGYSNDSGSEGLPVMAKKLAFQAFLISDTVAMCSSLAVAFICILARWEDLEFLLYYRSFTKKLMWFAYMATTIAFATGLYTVLAPRMLWLAVGICFLSVLLPILTKLLGEWPVVKLRFRLGKTFKTDLLDMV

Function Ankyrin repeat-containing protein NPR4 [UniProtKB/Swiss-Prot:A2CIR5]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsARC_11g0008970 OsARC_11g0008970.02 Chr11 7810232 7813646 - NAM
CDS seq

ATGGAGAGGCGGCTCCTGGAGGCAGCCATGGTTGGCAGTGCCACATCAATGAAGGAGATGGCTGCACAGGATCCAAGCCTGCTGCTTGGAACAACTCCTCAAGGGAACACCTGCCTCCACATCTCCTCCATCCATGGCCATGAGGGATTTTGCAAGGATGTGCTGACGCTAAACAATTCTCTTCTCACTGTCGCAAACATGGATGGTGAGACACCACTGCTCACTGCCGTGACAAATGGACACATGTCTTTGGCCTCTATTCTACTTGAATGCTGCTGCACACTAGGGTTCAGTGAGGCAATCTTGCAACAAGACAGAAATGGTTGTAATGCACTGCACCATGCCATTCATTGTGGTCACAAGGACCTTGCACTGGAATTGATATTAAAAGAGCCTGCCCTATCAAAAGCTGTGAACAAATACAGTGAGTCACCAATGTTCATCGCGGTAATGAGAGATTTTACAGATGTTTCTGAGAAACTGTTGGGAATTCCTGGATCTAGCCATGTTGGAACATATGGCCACAATGCCTTGCATGCTACTGTGAGAAATGGAAATGCAGTTATGGCTAAAAAAATTTTGGAGGGTCGTCCTTGGCTGGGGAAAGAACGAACCAGAGAGAGGAAGACCCCAATCCTGATGACGGTAATTTGGGACAAGATAGACGTGCTTCGTGTGTTGTTGGAACATGATGTGCTTTTAGGGTATGAATGCTATGATGATGGTGGTAATCTGAGCCCTCTTCTTGTTGCTGCTGCATATCGAGGTCATGTTGATGTTGCTCAAGAGCTTCTTAACCACTGTCCAGATGCTCCCTATTGCGACAGAAATGGTTGGACATGCCTTCATGAAGCTGTAAAGGAAGGTCAGACAGAGTTTGTGGAATTTATCCTAAGGACACCACAACTTCGTAAGCTCATCAACATGCGAAATAACAAGGACGGACAAACTGCTCTGCATCAAGCTGTCCGGATGTGCAATCCTAAAATTGTTGCCTCGTTGTTGTCTCATAAAGACACAGACTTCACACTGAATGATCACAAAACTGGCCAGTCAGTAATTTGGCAATTATGTTTGGGTTCAGAGCGTGCCAAGACTTTAAACTGGTCACTCACTCAAACATACACAAGCAACACTTCGCTAGTGGCTATTCTCATGGCGACGATAACCTTTGCCGCAGCCTTCACCCTGCCTGGGGGATACAGCAACGATTCTGGAAGCGAGGGACTTCCTGTCATGGCAAAGAAGTTAGCGTTTCAAGCATTCTTGATCTCTGACACCGTAGCAATGTGCTCCTCGCTTGCCGTCGCATTCATATGCATCCTAGCAAGGTGGGAGGATCTTGAATTCTTGCTTTACTACAGATCCTTTACGAAGAAGCTTATGTGGTTTGCATACATGGCGACCACTATAGCGTTTGCAACGGGTTTATACACCGTGTTGGCCCCACGAATGCTGTGGTTAGCTGTTGGAATTTGTTTCCTTTCGGTTTTACTGCCCATTCTCACTAAGCTGCTAGGTGAGTGGCCTGTCGTGAAGCTCAGATTTCGTTTGGGTAAGACTTTCAAGACTGATCTCCTTGATATGGTATGA

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Protein seq

MERRLLEAAMVGSATSMKEMAAQDPSLLLGTTPQGNTCLHISSIHGHEGFCKDVLTLNNSLLTVANMDGETPLLTAVTNGHMSLASILLECCCTLGFSEAILQQDRNGCNALHHAIHCGHKDLALELILKEPALSKAVNKYSESPMFIAVMRDFTDVSEKLLGIPGSSHVGTYGHNALHATVRNGNAVMAKKILEGRPWLGKERTRERKTPILMTVIWDKIDVLRVLLEHDVLLGYECYDDGGNLSPLLVAAAYRGHVDVAQELLNHCPDAPYCDRNGWTCLHEAVKEGQTEFVEFILRTPQLRKLINMRNNKDGQTALHQAVRMCNPKIVASLLSHKDTDFTLNDHKTGQSVIWQLCLGSERAKTLNWSLTQTYTSNTSLVAILMATITFAAAFTLPGGYSNDSGSEGLPVMAKKLAFQAFLISDTVAMCSSLAVAFICILARWEDLEFLLYYRSFTKKLMWFAYMATTIAFATGLYTVLAPRMLWLAVGICFLSVLLPILTKLLGEWPVVKLRFRLGKTFKTDLLDMV

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Gene Transcript Chromosome Start End Strand Source
OsARC_11g0008970 OsARC_11g0008970.01 Chr11 7811415 7813683 - NAM
CDS seq

ATGGAGAGGCGGCTCCTGGAGGCAGCCATGGTTGGCAGTGCCACATCAATGAAGGAGATGGCTGCACAGGATCCAAGCCTGCTGCTTGGAACAACTCCTCAAGGGAACACCTGCCTCCACATCTCCTCCATCCATGGCCATGAGGGATTTTGCAAGGATGTGCTGACGCTAAACAATTCTCTTCTCACTGTCGCAAACATGGATGGTGAGACACCACTGCTCACTGCCGTGACAAATGGACACATGTCTTTGGCCTCTATTCTACTTGAATGCTGCTGCACACTAGGGTTCAGTGAGGCAATCTTGCAACAAGACAGAAATGGTTGTAATGCACTGCACCATGCCATTCATTGTGGTCACAAGGACCTTGCACTGGAATTGATATTAAAAGAGCCTGCCCTATCAAAAGCTGTGAACAAATACAGTGAGTCACCAATGTTCATCGCGGTAATGAGAGATTTTACAGATGTTTCTGAGAAACTGTTGGGAATTCCTGGATCTAGCCATGTTGGAACATATGGCCACAATGCCTTGCATGCTACTGTGAGAAATGGAAATGCAGTTATGGCTAAAAAAATTTTGGAGGGTCGTCCTTGGCTGGGGAAAGAACGAACCAGAGAGAGGAAGACCCCAATCCTGATGACGGTAATTTGGGACAAGATAGACGTGCTTCGTGTGTTGTTGGAACATGATGTGCTTTTAGGGTATGAATGCTATGATGATGGTGGTAATCTGAGCCCTCTTCTTGTTGCTGCTGCATATCGAGGTCATGTTGATGTTGCTCAAGAGCTTCTTAACCACTGTCCAGATGCTCCCTATTGCGACAGAAATGGTTGGACATGCCTTCATGAAGCTGTAAAGGAAGGTCAGACAGAGTTTGTGGAATTTATCCTAAGGACACCACAACTTCGTAAGCTCATCAACATGCGAAATAACAAGGACGGACAAACTGCTCTGCATCAAGCTGTCCGGATGTGCAATCCTAAAATTGTTGCCTCGTTGTTGTCTCATAAAGACACAGACTTCACACTGAATGATCACAAAACTGGCCAGTCAGTAATTTGGCAATTATGTTTGGGTTCAGAGCGTGCCAAGACTTTAAACTGGGTATGTTGCAACTAG

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Protein seq

MERRLLEAAMVGSATSMKEMAAQDPSLLLGTTPQGNTCLHISSIHGHEGFCKDVLTLNNSLLTVANMDGETPLLTAVTNGHMSLASILLECCCTLGFSEAILQQDRNGCNALHHAIHCGHKDLALELILKEPALSKAVNKYSESPMFIAVMRDFTDVSEKLLGIPGSSHVGTYGHNALHATVRNGNAVMAKKILEGRPWLGKERTRERKTPILMTVIWDKIDVLRVLLEHDVLLGYECYDDGGNLSPLLVAAAYRGHVDVAQELLNHCPDAPYCDRNGWTCLHEAVKEGQTEFVEFILRTPQLRKLINMRNNKDGQTALHQAVRMCNPKIVASLLSHKDTDFTLNDHKTGQSVIWQLCLGSERAKTLNWVCCN

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Gene Transcript Chromosome Start End Strand Source
OsARC_11g0008970 OsARC_11g0008970.03 Chr11 7810036 7813615 - IsoSeq
CDS seq

ATGACGTCATCAAATTTATATTATTTGTTCTGCTTTCCAACACTACATATAAGTTCATGCAAAATGTATGTTGTAATATATACATTTTATTTTGGTGATATGTCTAGAAGATATCATGGAGAGTTGGAGACGATTATACCAGAGACAATATTTATGAGTTACTCCCTCTATCTCAAA

Protein seq

MTSSNLYYLFCFPTLHISSCKMYVVIYTFYFGDMSRRYHGELETIIPETIFMSYSLYLK

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
A3 Chr11 7810717 7811577 - OsARC_11g0008970.03 OsARC_11g0008970.03,OsARC_11g0008970.02 All
A3 Chr11 7812897 7813060 - OsARC_11g0008970.02,OsARC_11g0008970.01 OsARC_11g0008970.03,OsARC_11g0008970.02,OsARC_11g0008970.01 All

Expression

Leaf Root Panicle
FPKM 0.080717 0.024619 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_11g0252400 RBH 0.307645 0.404049 30.317059
Nipponbare | IRGSP 1.0 | MSU LOC_Os11g14570 RBH 0.179901 0.184715 6.899702
Nipponbare | IRGSP 1.0 | RAP-db Os11g0252400 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_11g0009230 RBH 0.000000 17.342962 54.168758
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_11g0009120 RBH 0.110698 0.000000 24.216803
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_11g0009150 RBH 0.526214 3.206896 60.267441
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) NA NA NA NA NA
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_11g0009040 RBH 0.821049 0.0 88.210884
Minghui 63 | MH63RS3 | HZAU OsMH63_11G0123400 RBH 2.7790365 3.9994535 3.3207335
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_11g0009040 RBH 0.0 0.0 2.220248
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_11G0126100 RBH 5.6626315 6.751519 15.9287985
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_11g0009120 RBH 0.036082 0.052922 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_11g0009230 RBH 0.086242 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_11g0009110 RBH 1.058168 0.000000 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_11g0009000 RBH 0.096691 0.0 0.657458
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_11g0009130 RBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_11G009210 RBH 0.069837 0.0 16.538034
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_11g0009030 RBH 0.000000 0.0 3.962668
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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