Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0006590 | OGI:11016480 | 4/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:5406319-5406606 | ||||||||
| Gene Symbol | TPP8, OsTPP8, OsTPP2, - | ||||||||||
| DNA seq | atgctcctgaccatggtgttcacggcagctgtggcgttggctctcgtcaacgccgtcaactcgcatgacttcgcagcacacctcgccggcgtggactgccgcatggggctagctggtccagtacgatgcccagcctcggacttcgtggagctcctcgtgtcggcgctacatgtggttggatgcgtgctcgccatcttagatcgcctgcatgcctgcctaatgtcaccctcgctacagctttcgattgcatctccatgtacgcgcgccggtggcagcgcggcgaagtga |
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| CDS seq | atgctcctgaccatggtgttcacggcagctgtggcgttggctctcgtcaacgccgtcaactcgcatgacttcgcagcacacctcgccggcgtggactgccgcatggggctagctggtccagtacgatgcccagcctcggacttcgtggagctcctcgtgtcggcgctacatgtggttggatgcgtgctcgccatcttagatcgcctgcatgcctgcctaatgtcaccctcgctacagctttcgattgcatctccatgtacgcgcgccggtggcagcgcggcgaagtga |
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| Protein seq | MLLTMVFTAAVALALVNAVNSHDFAAHLAGVDCRMGLAGPVRCPASDFVELLVSALHVVGCVLAILDRLHACLMSPSLQLSIASPCTRAGGSAAK |
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| Function | Probable trehalose-phosphate phosphatase 8 [UniProtKB/Swiss-Prot:Q0DDI1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0006590 | OsLima_11g0006590.01 | Chr11 | 5406319 | 5406606 | + | NAM | ||
| CDS seq | atgctcctgaccatggtgttcacggcagctgtggcgttggctctcgtcaacgccgtcaactcgcatgacttcgcagcacacctcgccggcgtggactgccgcatggggctagctggtccagtacgatgcccagcctcggacttcgtggagctcctcgtgtcggcgctacatgtggttggatgcgtgctcgccatcttagatcgcctgcatgcctgcctaatgtcaccctcgctacagctttcgattgcatctccatgtacgcgcgccggtggcagcgcggcgaagtga
More
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| Protein seq | MLLTMVFTAAVALALVNAVNSHDFAAHLAGVDCRMGLAGPVRCPASDFVELLVSALHVVGCVLAILDRLHACLMSPSLQLSIASPCTRAGGSAAK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0006730 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0009760 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0170800 | SBH | 0 | 0 | 0.125741 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0010220 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0467000 | SBH | 0.025116 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0009710 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0009740 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0009710 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0028210 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0008560 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0028280 | SBH | 0.0 | 0.0 | 0.0 |
