Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0005890 | OGI:11014520 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:4694889-4695535 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttagtaaatcaaagacaacataaacctgtagaaaccatccaagaagaaaccggatgagagcctcctcgccaagttcatgtctggtaaagtctcccaatgaccagtctctgaattgtacagctcggcagatttcagcacctgtccattcttatcacacccaccagcaacaatagcaatctcaccaaagcttcctgaggcaacaggttaattctcatatgtccaagaaaatacacaacaaaataaatagtagaagatacacttgaaggtggaccaagttagaatttctcaccttaaaatcaattagggaaagctttatcaggcggtaatcttctcctcggctgcactcactctcacaagatatcgcttacatgatagacaagatgggctatgtcgagatctccatcaatttgaaggtaacttttattttcactaaaagtttttgggtttttttgttttctctactattcaccctctctggtatgtttgtttggtcttattcgatcgtacaatagtggcccgtatatgtcgtcatttcccacgaactgtggcgcatgtgcggaggagccctcccctacttctggataccgagccacgtaagcccctcctcactaaccctgcccatctagccatactggcccgacctgcat
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| CDS seq | atgcaggtcgggccagtatggctagatgggcagggaagctttggtgagattgctattgttgctggtgggtgtgataagaatggacaggtgctgaaatctgccgagctgtacaattcagagactggtcattgggagactttaccagacatgaacttggcgaggaggctctcatccggtttcttcttggatggtttctacaggtttatgttgtctttgatttactaa |
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| Protein seq | MQVGPVWLDGQGSFGEIAIVAGGCDKNGQVLKSAELYNSETGHWETLPDMNLARRLSSGFFLDGFYRFMLSLIY |
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| Function | F-box/kelch-repeat protein At1g74510 [UniProtKB/Swiss-Prot:Q9CA63] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0005890 | OsLima_11g0005890.01 | Chr11 | 4694889 | 4695535 | - | NAM | ||
| CDS seq | atgcaggtcgggccagtatggctagatgggcagggaagctttggtgagattgctattgttgctggtgggtgtgataagaatggacaggtgctgaaatctgccgagctgtacaattcagagactggtcattgggagactttaccagacatgaacttggcgaggaggctctcatccggtttcttcttggatggtttctacaggtttatgttgtctttgatttactaa
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| Protein seq | MQVGPVWLDGQGSFGEIAIVAGGCDKNGQVLKSAELYNSETGHWETLPDMNLARRLSSGFFLDGFYRFMLSLIY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0602800 | SBH | 2.317529 | 1.490048 | 16.630428 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g08830 | RBH | 0.000000 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0602800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0006020 | SBH | 0.000000 | 0.000000 | 10.004725 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0006030 | SBH | 0.0 | 0.0 | 10.928123 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0006060 | SBH | 0.000000 | 1.235845 | 22.572723 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0005970 | SBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0019570 | SBH | 7.659898 | 25.346582 | 60.739590 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0077200 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0005930 | SBH | 0.0 | 0.0 | 8.018981 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0077500 | RBH | 0.1671385 | 0.0623225 | 0.04345 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0005960 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0005960 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0005980 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0005970 | RBH | 0.402136 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G006070 | SBH | 0.0 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0005870 | RBH | 3.797805 | 8.070624 | 8.673528 |
