Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0602800 | OGI:11067320 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:23194895-23197316 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CGTCAACAAGGACATTTTTTCTTTCTTCCTTTATTTCTTACAATCTATGGGCAAATGGTTTGCCAATGTAACCTACTCTCTGGAGCTAAAAAACTTTCATGAAGGTATCCAAGGTAGATCAAAATGTTGAGGTTGCACCAAATTATTAATCTAATGCTGCGCTGCATGTCCCACTTTCTGGAAACCATTTGCAGGCCCTCCAAATGGAATTAAAATGAAGAGATTAGACATAAGCAAGTAAGAAGCTACATGAGAAATTCTACCCAATCTTCAGCTCAGCCTAAAATGCCAGAGAAGGCAGAAATTACCCATCGAGCACAATCACTAAACAAGCTCAGAAGAATTTGCCTCTTTTATCCTTCCTTTTGGTCAAGATGTACAGTCAATAATGTAATAGCCCTGGTATGTCAACAGCCCATCACAGCACAATTGTACACAAAGCTTCCAGAACGGCGGCTGCCAATGATTTTCCAATCTGGCTGTCCATTATTGGGTATCCATGAACAAATTTCAATCACTCCACCACCAGGTGCACTCATTCCACCAATCACAATGAGCTTATCTCCACAACCACGAAATGCCAAACCCCAGCCATTAACTGATGTATACTTCTCAGGCAATGATCCAAGAGTGATCCATGCATTATTAACCTTGTCATATCTCCTCACCTCCTTCTCTGCATAATCAGCAGCATAAAGTTCATTATTCACAACAGCAACAAGTGGTGGAGCACCACTGCCGCCATTAAGGCCAGATGCCATATCTGGGATCAAACGCCAGGTGCCCTTCTCCAAATCAAACTCCTCACCACAATTAAGGATCTCATTATGGTTATCAGCTTTCCCGCCAATAACATAAAATTTACCATCCATGAAGAAACCAGAACACATCTTCCGCGCCCTATTCATGCTTGGGAGAGTGGTCCATGTCTTCGCTTCAGAATCATAGAGCTCAGCAGAGCTCAATGTACCATTATCACCGATACCACCAGCTACGATTGCCTTCTCACCAAAGCTTGCCGAGCCAAACAAGCACCTGGGCGAGTTCATCATATCTCCTGTTGTCCAAGAGTTACTTAGGAGGCTATACCTCAGCACAACATGGGCCTCCACCTTCTTCCCGAAAACAAGGATATTGGTTCCCACAGCAAGGGACTCCTTATCAGCAAGCGTGAAGCACTCTATGGGAGGCATGGAAGGGATGTTGAACCAGCGCTGGCGGCACGGATCAAAGCCATCCCACTCAAGCACATTGCAGGAGCAGTAGATCATGTGCTCAACAATGCGAGCCTCCCGCCGCAATCTATACAGCTGCCCGGACCTCATAAGGGAGCAGAAGGACCGGTTGAGGCATGCTATCATACCATAATAAGACCGGGGGGTATGGAGCAGGCATGTAATGGCCAGCTCCCGCCCGATCGCGCCTATGAGCTCGCTTGTGTTGGCTTCACCATTCTGATCAGCATCCTGCATTTCTGAGTCCCAAACTCCGGTACCGGAATTCCCCGAATCACTGGCAACCTTATTCTTCTTGCTTCTACGGTTCAAGAGCTCCTCCTCCTCCACCTCTTCTCCCTTCCTCACCCCCGCCGCCGTCACCGCCACCGCCGAGCTCTCAACCGCAAGGTTCCGGCTTCTTGAAACAACCTCTTCAGATGATGAGCTCGCTGACTCTAGCAGGAATTTCCTGCGCTGGTCCCCCAACATGACCAGCCAACCCTTCAATCTCCTCACCAACAGCAAACAAACCTAACCTAGAGGCTGGATTGGATCTTACCCAGCAGCAAGAAACAACCCAATAGGGATGATTCCTCTTGCAAACTCCCCTCTTTTCGCCCCTAAATTAAGGATCCAATCTGCAACGACAGCACACAAAACGATCAGAACCAATACAGAAAAAAAAACCGCAAAAAAAAACTGCAAGCGTTTCAGAAACAAGATCTACACAACCTAATCCCTGCATCAAATAGACCCAACAACAACAACCCAAAAAAAAAAGAAAGAAAAATCTGTCTGCTCCCCACAAGCACCGGGGTGGCTCGAGCGCCCATGTGTTCATCTCAAGCCCCGAAATTTCTCACGAAAAACAAAATCTTCCATTCGATTCGAACCGAGATTGAAGCACAAGGAGGTAGTCGGCGACGCACCTTCAAAGATGAAAAAAAAAAAGAAAAGAAAAACAAAGACTTCTTGCCGGCGAGGCCGCACCGGCGGGGGCGGGTGGTCGGCGAGGACAGGATGCCGCCCACACCGGCGCCTACGGGCCCATCTCGCCGGCGGCGCCCACCACCACCACCACCACCTCCGCCTCGCGCCGCAGATTGGAAGAAGAGAGAGAGAGAGGGAGGGAGAGAGAGAAAGCTCTGTTTTTTTTTCTCTCCTCTCTCCTCACCTGCTGTTTTTGTATTCTATTGGCAAACTCC
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| CDS seq | ATGTTGGGGGACCAGCGCAGGAAATTCCTGCTAGAGTCAGCGAGCTCATCATCTGAAGAGGTTGTTTCAAGAAGCCGGAACCTTGCGGTTGAGAGCTCGGCGGTGGCGGTGACGGCGGCGGGGGTGAGGAAGGGAGAAGAGGTGGAGGAGGAGGAGCTCTTGAACCGTAGAAGCAAGAAGAATAAGGTTGCCAGTGATTCGGGGAATTCCGGTACCGGAGTTTGGGACTCAGAAATGCAGGATGCTGATCAGAATGGTGAAGCCAACACAAGCGAGCTCATAGGCGCGATCGGGCGGGAGCTGGCCATTACATGCCTGCTCCATACCCCCCGGTCTTATTATGGTATGATAGCATGCCTCAACCGGTCCTTCTGCTCCCTTATGAGGTCCGGGCAGCTGTATAGATTGCGGCGGGAGGCTCGCATTGTTGAGCACATGATCTACTGCTCCTGCAATGTGCTTGAGTGGGATGGCTTTGATCCGTGCCGCCAGCGCTGGTTCAACATCCCTTCCATGCCTCCCATAGAGTGCTTCACGCTTGCTGATAAGGAGTCCCTTGCTGTGGGAACCAATATCCTTGTTTTCGGGAAGAAGGTGGAGGCCCATGTTGTGCTGAGGTATAGCCTCCTAAGTAACTCTTGGACAACAGGAGATATGATGAACTCGCCCAGGTGCTTGTTTGGCTCGGCAAGCTTTGGTGAGAAGGCAATCGTAGCTGGTGGTATCGGTGATAATGGTACATTGAGCTCTGCTGAGCTCTATGATTCTGAAGCGAAGACATGGACCACTCTCCCAAGCATGAATAGGGCGCGGAAGATGTGTTCTGGTTTCTTCATGGATGGTAAATTTTATGTTATTGGCGGGAAAGCTGATAACCATAATGAGATCCTTAATTGTGGTGAGGAGTTTGATTTGGAGAAGGGCACCTGGCGTTTGATCCCAGATATGGCATCTGGCCTTAATGGCGGCAGTGGTGCTCCACCACTTGTTGCTGTTGTGAATAATGAACTTTATGCTGCTGATTATGCAGAGAAGGAGGTGAGGAGATATGACAAGGTTAATAATGCATGGATCACTCTTGGATCATTGCCTGAGAAGTATACATCAGTTAATGGCTGGGGTTTGGCATTTCGTGGTTGTGGAGATAAGCTCATTGTGATTGGTGGAATGAGTGCACCTGGTGGTGGAGTGATTGAAATTTGTTCATGGATACCCAATAATGGACAGCCAGATTGGAAAATCATTGGCAGCCGCCGTTCTGGAAGCTTTGTGTACAATTGTGCTGTGATGGGCTGTTGA
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| Protein seq | MLGDQRRKFLLESASSSSEEVVSRSRNLAVESSAVAVTAAGVRKGEEVEEEELLNRRSKKNKVASDSGNSGTGVWDSEMQDADQNGEANTSELIGAIGRELAITCLLHTPRSYYGMIACLNRSFCSLMRSGQLYRLRREARIVEHMIYCSCNVLEWDGFDPCRQRWFNIPSMPPIECFTLADKESLAVGTNILVFGKKVEAHVVLRYSLLSNSWTTGDMMNSPRCLFGSASFGEKAIVAGGIGDNGTLSSAELYDSEAKTWTTLPSMNRARKMCSGFFMDGKFYVIGGKADNHNEILNCGEEFDLEKGTWRLIPDMASGLNGGSGAPPLVAVVNNELYAADYAEKEVRRYDKVNNAWITLGSLPEKYTSVNGWGLAFRGCGDKLIVIGGMSAPGGGVIEICSWIPNNGQPDWKIIGSRRSGSFVYNCAVMGC |
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| Function | F-box/kelch-repeat protein SKIP11 [UniProtKB/Swiss-Prot:Q8L736] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0602800 | OsNip_11t0602800-01 | Chr11 | 23194895 | 23197316 | - | RAP2018-11-26 | ||
| CDS seq | ATGTTGGGGGACCAGCGCAGGAAATTCCTGCTAGAGTCAGCGAGCTCATCATCTGAAGAGGTTGTTTCAAGAAGCCGGAACCTTGCGGTTGAGAGCTCGGCGGTGGCGGTGACGGCGGCGGGGGTGAGGAAGGGAGAAGAGGTGGAGGAGGAGGAGCTCTTGAACCGTAGAAGCAAGAAGAATAAGGTTGCCAGTGATTCGGGGAATTCCGGTACCGGAGTTTGGGACTCAGAAATGCAGGATGCTGATCAGAATGGTGAAGCCAACACAAGCGAGCTCATAGGCGCGATCGGGCGGGAGCTGGCCATTACATGCCTGCTCCATACCCCCCGGTCTTATTATGGTATGATAGCATGCCTCAACCGGTCCTTCTGCTCCCTTATGAGGTCCGGGCAGCTGTATAGATTGCGGCGGGAGGCTCGCATTGTTGAGCACATGATCTACTGCTCCTGCAATGTGCTTGAGTGGGATGGCTTTGATCCGTGCCGCCAGCGCTGGTTCAACATCCCTTCCATGCCTCCCATAGAGTGCTTCACGCTTGCTGATAAGGAGTCCCTTGCTGTGGGAACCAATATCCTTGTTTTCGGGAAGAAGGTGGAGGCCCATGTTGTGCTGAGGTATAGCCTCCTAAGTAACTCTTGGACAACAGGAGATATGATGAACTCGCCCAGGTGCTTGTTTGGCTCGGCAAGCTTTGGTGAGAAGGCAATCGTAGCTGGTGGTATCGGTGATAATGGTACATTGAGCTCTGCTGAGCTCTATGATTCTGAAGCGAAGACATGGACCACTCTCCCAAGCATGAATAGGGCGCGGAAGATGTGTTCTGGTTTCTTCATGGATGGTAAATTTTATGTTATTGGCGGGAAAGCTGATAACCATAATGAGATCCTTAATTGTGGTGAGGAGTTTGATTTGGAGAAGGGCACCTGGCGTTTGATCCCAGATATGGCATCTGGCCTTAATGGCGGCAGTGGTGCTCCACCACTTGTTGCTGTTGTGAATAATGAACTTTATGCTGCTGATTATGCAGAGAAGGAGGTGAGGAGATATGACAAGGTTAATAATGCATGGATCACTCTTGGATCATTGCCTGAGAAGTATACATCAGTTAATGGCTGGGGTTTGGCATTTCGTGGTTGTGGAGATAAGCTCATTGTGATTGGTGGAATGAGTGCACCTGGTGGTGGAGTGATTGAAATTTGTTCATGGATACCCAATAATGGACAGCCAGATTGGAAAATCATTGGCAGCCGCCGTTCTGGAAGCTTTGTGTACAATTGTGCTGTGATGGGCTGTTGA
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| Protein seq | MLGDQRRKFLLESASSSSEEVVSRSRNLAVESSAVAVTAAGVRKGEEVEEEELLNRRSKKNKVASDSGNSGTGVWDSEMQDADQNGEANTSELIGAIGRELAITCLLHTPRSYYGMIACLNRSFCSLMRSGQLYRLRREARIVEHMIYCSCNVLEWDGFDPCRQRWFNIPSMPPIECFTLADKESLAVGTNILVFGKKVEAHVVLRYSLLSNSWTTGDMMNSPRCLFGSASFGEKAIVAGGIGDNGTLSSAELYDSEAKTWTTLPSMNRARKMCSGFFMDGKFYVIGGKADNHNEILNCGEEFDLEKGTWRLIPDMASGLNGGSGAPPLVAVVNNELYAADYAEKEVRRYDKVNNAWITLGSLPEKYTSVNGWGLAFRGCGDKLIVIGGMSAPGGGVIEICSWIPNNGQPDWKIIGSRRSGSFVYNCAVMGC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.317529 | 1.490048 | 16.630428 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g38980 | RBH | 1.433469 | 0.916194 | 4.114048 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0602800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0019530 | RBH | 0.623589 | 7.548991 | 9.033244 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0019750 | RBH | 0.155123 | 2.534882 | 7.891523 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0019480 | RBH | 1.011151 | 11.628452 | 18.540339 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0019100 | RBH | 0.143054 | 0.393970 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0019570 | RBH | 7.659898 | 25.346582 | 60.739590 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0354200 | RBH | 3.6401105 | 10.359902 | 6.9925335 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0020030 | RBH | 0.182235 | 0.937590 | 5.315439 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0368100 | RBH | 5.7418055 | 11.7594545 | 7.7355645 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0019830 | RBH | 0.311845 | 0.289199 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0020030 | RBH | 0.467452 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0019490 | RBH | 0.000000 | 29.770693 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0019230 | RBH | 0.893594 | 0.0 | 4.234694 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0019310 | RBH | 0.367594 | 8.883607 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G019410 | RBH | 0.599629 | 4.014698 | 6.360246 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0019790 | RBH | 0.807209 | 39.145897 | 24.197739 |
