Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0002420 | OGI:11007090 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:1721782-1722438 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggatccgccggctcgcagattgatggattctcgggcggcgcagttggcggcgccacttcctgattcatactcggcagaaacatttgaagacctactccgagaattgggagtcgaccctagtatccacaccatagtccgtagcgccgggagatggatggatccggcagcggcagcagcacgagttccagtgagattccaccgcatgctccaacgcctaggaatcgaccccaatagcgatgcccggagcatccgcgacatgctacaagagttctatcgagtggtgtaccatggagaggtgtactgggctggccgagtcatcaggcctcgtccttcgtccatgccaacgcccgtgctaggacgacgtcgccgcgccgccgacggggatgccccgatgcagccgccgagcaagtacgctcgagtacacgccgtgtcgcgcgatgtcctcctgggcctcgcgctgacgaaggcgtgcgacgcgaggcaggaggagtgcgccgtgtgcctcagcgacttcgaggagaaagacaggctgaggacgatgccgtgtaaccactccttccacgagaactgcctcttccgttggctcagggatagctgcctctgccctctctgccgctacgcgctgcccaagcagcagcaggttcaaagctgctga
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| CDS seq | atggatccgccggctcgcagattgatggattctcgggcggcgcagttggcggcgccacttcctgattcatactcggcagaaacatttgaagacctactccgagaattgggagtcgaccctagtatccacaccatagtccgtagcgccgggagatggatggatccggcagcggcagcagcacgagttccagtgagattccaccgcatgctccaacgcctaggaatcgaccccaatagcgatgcccggagcatccgcgacatgctacaagagttctatcgagtggtgtaccatggagaggtgtactgggctggccgagtcatcaggcctcgtccttcgtccatgccaacgcccgtgctaggacgacgtcgccgcgccgccgacggggatgccccgatgcagccgccgagcaagtacgctcgagtacacgccgtgtcgcgcgatgtcctcctgggcctcgcgctgacgaaggcgtgcgacgcgaggcaggaggagtgcgccgtgtgcctcagcgacttcgaggagaaagacaggctgaggacgatgccgtgtaaccactccttccacgagaactgcctcttccgttggctcagggatagctgcctctgccctctctgccgctacgcgctgcccaagcagcagcaggttcaaagctgctga
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| Protein seq | MDPPARRLMDSRAAQLAAPLPDSYSAETFEDLLRELGVDPSIHTIVRSAGRWMDPAAAAARVPVRFHRMLQRLGIDPNSDARSIRDMLQEFYRVVYHGEVYWAGRVIRPRPSSMPTPVLGRRRRAADGDAPMQPPSKYARVHAVSRDVLLGLALTKACDARQEECAVCLSDFEEKDRLRTMPCNHSFHENCLFRWLRDSCLCPLCRYALPKQQQVQSC |
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| Function | E3 ubiquitin protein ligase RIE1 [UniProtKB/Swiss-Prot:Q8GUU2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0002420 | OsLima_11g0002420.01 | Chr11 | 1721782 | 1722438 | + | NAM | ||
| CDS seq | atggatccgccggctcgcagattgatggattctcgggcggcgcagttggcggcgccacttcctgattcatactcggcagaaacatttgaagacctactccgagaattgggagtcgaccctagtatccacaccatagtccgtagcgccgggagatggatggatccggcagcggcagcagcacgagttccagtgagattccaccgcatgctccaacgcctaggaatcgaccccaatagcgatgcccggagcatccgcgacatgctacaagagttctatcgagtggtgtaccatggagaggtgtactgggctggccgagtcatcaggcctcgtccttcgtccatgccaacgcccgtgctaggacgacgtcgccgcgccgccgacggggatgccccgatgcagccgccgagcaagtacgctcgagtacacgccgtgtcgcgcgatgtcctcctgggcctcgcgctgacgaaggcgtgcgacgcgaggcaggaggagtgcgccgtgtgcctcagcgacttcgaggagaaagacaggctgaggacgatgccgtgtaaccactccttccacgagaactgcctcttccgttggctcagggatagctgcctctgccctctctgccgctacgcgctgcccaagcagcagcaggttcaaagctgctga
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| Protein seq | MDPPARRLMDSRAAQLAAPLPDSYSAETFEDLLRELGVDPSIHTIVRSAGRWMDPAAAAARVPVRFHRMLQRLGIDPNSDARSIRDMLQEFYRVVYHGEVYWAGRVIRPRPSSMPTPVLGRRRRAADGDAPMQPPSKYARVHAVSRDVLLGLALTKACDARQEECAVCLSDFEEKDRLRTMPCNHSFHENCLFRWLRDSCLCPLCRYALPKQQQVQSC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0146750 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g04281 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0146750 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0002530 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0002530 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0002550 | RBH | 0.0 | 1.488823 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0002450 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0002480 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0037000 | SBH | 0.042774 | 0 | 0.256267 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0002490 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0039500 | SBH | 0 | 0.013355 | 0.1900315 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0002380 | SBH | 0.010849 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0002510 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0002560 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0002470 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0002560 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G002510 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0002490 | SBH | 0.0 | 0.000000 | 0.000000 |
