Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0002280 | OGI:11005800 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:1634476-1638757 | ||||||||
| Gene Symbol | CDPK25, OsCDPK25, OsCPK25, CDPK26, OsCDPK26, OsCPK26 | ||||||||||
| DNA seq | agttgttgatggtggaggaagaagagaagcagagcagcgtggggaggtggcggtgtaggtggctcgtcgacgtcggccggtggcgcccctcccccgctgagttccaagccgccgccgccttcctcccgccgcacgaccgccccgccatccacaggtttttccaaccaattcctcttcccccacattgattccacccactcactactgaaattcaattcagcctctagatttttctcctcctcctcacgagtcacgacctcaccgctgcaggttcgtcagagaagatgacaggaaacgggcgctcgtcagtcgccttctccaatactcgctcgtgcaccatgctcttggaatcccattccaccaaattcgcatcaaccgcacgcttgaagggaagccctacctggtagtagtagtagatattcccatcaattagttcatgtctgctctgcatcccaaatccatctctttcagtttcacgtttacagtctgtcagtttctgaagcccaaattgcaactgatcacgtctgctgttgcagcagaataaaaatgccaactttcctggcttcaacttcaacacgtcgcatcagggggagtacgttggcatagcatctgagcctctctgcctcgttggcctggacattgtgtgcatctccaagcctcaacgagaaactgccctggagttcatcaacaatttcacttcctatctcactgatcatgagtggaactgcattgttactgcaggcagccatgatggtatgctaactgagttctacaggtatatgaatttgttcttgttcaaTtttttttattttcagaacaactgcagggtgctgatcatgtttacaagccaaaatttgtggagttacttaagatttaacgattgtctgtttttgtaggtattggtgtcttaaagaagcatttgtcaaagctacaggtgctggcgttggatttgggttgcaacgtttggaattccaccatatgaattggactaatatttctctccgtattgatggagaagaggataggaaatggaggttttggcttttcaagattgatgaaaagcatttggtatgtctgaattttttcacaacatctacagtgcctaaactttggctcttgtacttctagttttggtcttgtgataggttatttgcttacgattatcaacaccattgcaggcatccattgcgaaagggcatccagaggatgctattgacagcttcaggagaacattatctgatgtggttattcaggagggagaattgcatacggcaatagaaattccagaagaagctttcactctattgacagtggaacaacttatacagttacatgattaaatggtcttcttgaattttgcggtgacatattaatgcaggactaaaatcaacaaattgtgagtgtatcctgaaagttaaaatatatacatagcacaccaaaattaggaaaagtatccttgtatttgctctcggtgcttctgcagaaatgagagcttaggggttagggcctgtttttttttttttcataacagagaagacacttgatattgtaagctttgactagtttggtagtgtttgcaaaggcccatttttttaggcaattgtaaaggcagattgatgattgttcactggaaaaatctaatcaaaaaaactattagcagccaattgatgattggtcacaggaaaatctaaccagaaacaattattagcagccaagaatagcccgcgaccaaacctacgagacgctgaaaatccaaacggaaacaactaccgctcacttcttcccgccatttcctctcaacccatcaaactcacacacccatttcttccttctaccaaaaattctctctccgatccgtgcctctccgtcgccggagcaggcacgcgcgaatcccaccgacgccatgggccagtgctgcacgggtggcgggaaggccgtcgccggcgacgaggcagagccggggacctccaaggcggcgccgccgagccgcggcacctcctccaaaaatgggtccgccaagcagcagccgtgctcgccggcggccaaggcggcggcgacggaagcggcggcggcggcgtcgtcgtccaagaagccggcaggccccatcggcgaggtgctggagcggccgatggaggaggttcgcacgacgtactccatcggcaaggagctcgggcgcgggcagttcggcgtgacccacctgtgcacccacaaggccaccggcgagaagctggcgtgcaagacgatcgcgaagcggaagctggcgaacaaggaggacgtcgacgacgtccgccgcgaggtgcagatcatgcaccacctctccggccagccaaacatcgtcgacctccgcggcgcctacgaggacaagcacaacgtccacctcgtgatggagctctgcgccggcggcgagctcttcgaccgcatcatcgcgcggggccactacacggagcgcgccgcggcggcgctcctccgcgccatcgtcgggatcgtgcacacctgccactccatgggggtgatccaccgggacctcaagccggagaacttcctgctgctgagcaagggggacgacgcgccgctcaaggccaccgacttcggcctctccgtcttcttcaaggaaggcgaggtgttccgcgacatcgtcggcagcgcctactacatcgcgccggaggtgctcaagaggaagtacggccccgaggccgacatctggagcatcggcgtcatgctctacatcttcctcgccggcgtgccgcccttctgggccgagtcggagaacgccatcttcaccgccatccttcgcggacagatcgacctcgccagtgagccatggccgaagatctcctctggagccaaggacctcgtcaggaagatgctcaacatcaaccccaaggagaggcttacagcattccaagtgctcagtaagtttatttgttacagattaattactcaaatctgctccttttttttcatatagaggtacagtttggattaattttccctttattggtgtcagaattaaatttggattcatttggatcaatttggatttgcagatcacccgtggatcaaagaagatggggatgctcctgatgtaccacttgacaatgttgttctcaacaggctcaagcagttcagggccatgaaccagttcaagaaagctgcactgagggtaaatattactcttaatcacatcatcagggtagatatatgcatcttaattgttgttttgaatcttctgtagattatagccggatgcctgtcagaggaggagatcaaggggctgaaggagatgttcaagaacatcgacaaggacaatagtgggaccattacgcttgaggagctcaaaaatgggttagcaaagcagggcaccaagttttcagacaacgaaattgagcaactgatggaagcagtgagtcctcatagtgaagctacaaacttcagttcagttcgagatgaaatgctaaaactgacaggactcctggaaattcctttcaactttcaggctgatgctgatggcaatggaattatcgactatgaggagttcgtcaccgcgacagtgcacatgaacaaaatggatcgagaagagcacctttacacggcattccagtactttgacaaggataatagtgggtaagttaaggatagcaaaaactgatataactgaattctgaacttcagggatttgtacacatttattccatccctcttgcaggtacatcacaaaggaagagctcgagcaagccttgaaggaacaagggttatacgacgccaacgagatcaaggatgtcatcacagatgcagactctaataatgtaaggaagaaatgctctttaaattgtgttcatgcaaaacagatgaaatcgataaagctgaaaatatttgtcctatcaagagacgctgaatgcatttttcacatgtaggatgggcggatagattattcagagtttgtggccatgatgaggaaaggatcaggctgtgcagaagcaacaaacccaaagaagaagaggcgagatctagttctatagcgaaacagggtagtgtgtatagtggctggtttgtgcacaatttcaaacatgatgtgcatttaccacgagtgtaatgtatacaatggaattttctttccaattgcatatttgcatttcaggttgggctcaggttcatgtttggtcttgcacattgtcctggctagttgttgggaagatggatttgttccttctttctgttcagtcatcttgtacactacatgattgaatcctacctgattagaaagcccaaaagattgctggta
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| CDS seq | atgggccagtgctgcacgggtggcgggaaggccgtcgccggcgacgaggcagagccggggacctccaaggcggcgccgccgagccgcggcacctcctccaaaaatgggtccgccaagcagcagccgtgctcgccggcggccaaggcggcggcgacggaagcggcggcggcggcgtcgtcgtccaagaagccggcaggccccatcggcgaggtgctggagcggccgatggaggaggttcgcacgacgtactccatcggcaaggagctcgggcgcgggcagttcggcgtgacccacctgtgcacccacaaggccaccggcgagaagctggcgtgcaagacgatcgcgaagcggaagctggcgaacaaggaggacgtcgacgacgtccgccgcgaggtgcagatcatgcaccacctctccggccagccaaacatcgtcgacctccgcggcgcctacgaggacaagcacaacgtccacctcgtgatggagctctgcgccggcggcgagctcttcgaccgcatcatcgcgcggggccactacacggagcgcgccgcggcggcgctcctccgcgccatcgtcgggatcgtgcacacctgccactccatgggggtgatccaccgggacctcaagccggagaacttcctgctgctgagcaagggggacgacgcgccgctcaaggccaccgacttcggcctctccgtcttcttcaaggaaggcgaggtgttccgcgacatcgtcggcagcgcctactacatcgcgccggaggtgctcaagaggaagtacggccccgaggccgacatctggagcatcggcgtcatgctctacatcttcctcgccggcgtgccgcccttctgggccgagtcggagaacgccatcttcaccgccatccttcgcggacagatcgacctcgccagtgagccatggccgaagatctcctctggagccaaggacctcgtcaggaagatgctcaacatcaaccccaaggagaggcttacagcattccaagtgctcaatcacccgtggatcaaagaagatggggatgctcctgatgtaccacttgacaatgttgttctcaacaggctcaagcagttcagggccatgaaccagttcaagaaagctgcactgaggattatagccggatgcctgtcagaggaggagatcaaggggctgaaggagatgttcaagaacatcgacaaggacaatagtgggaccattacgcttgaggagctcaaaaatgggttagcaaagcagggcaccaagttttcagacaacgaaattgagcaactgatggaagcagctgatgctgatggcaatggaattatcgactatgaggagttcgtcaccgcgacagtgcacatgaacaaaatggatcgagaagagcacctttacacggcattccagtactttgacaaggataatagtgggtacatcacaaaggaagagctcgagcaagccttgaaggaacaagggttatacgacgccaacgagatcaaggatgtcatcacagatgcagactctaataatgatgggcggatagattattcagagtttgtggccatgatgaggaaaggatcaggctgtgcagaagcaacaaacccaaagaagaagaggcgagatctagttgggctcaggttcatgtttggtcttgcacattgtcctggctag
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| Protein seq | MGQCCTGGGKAVAGDEAEPGTSKAAPPSRGTSSKNGSAKQQPCSPAAKAAATEAAAAASSSKKPAGPIGEVLERPMEEVRTTYSIGKELGRGQFGVTHLCTHKATGEKLACKTIAKRKLANKEDVDDVRREVQIMHHLSGQPNIVDLRGAYEDKHNVHLVMELCAGGELFDRIIARGHYTERAAAALLRAIVGIVHTCHSMGVIHRDLKPENFLLLSKGDDAPLKATDFGLSVFFKEGEVFRDIVGSAYYIAPEVLKRKYGPEADIWSIGVMLYIFLAGVPPFWAESENAIFTAILRGQIDLASEPWPKISSGAKDLVRKMLNINPKERLTAFQVLNHPWIKEDGDAPDVPLDNVVLNRLKQFRAMNQFKKAALRIIAGCLSEEEIKGLKEMFKNIDKDNSGTITLEELKNGLAKQGTKFSDNEIEQLMEAADADGNGIIDYEEFVTATVHMNKMDREEHLYTAFQYFDKDNSGYITKEELEQALKEQGLYDANEIKDVITDADSNNDGRIDYSEFVAMMRKGSGCAEATNPKKKRRDLVGLRFMFGLAHCPG |
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| Function | Calcium-dependent protein kinase 25 [UniProtKB/Swiss-Prot:Q2RAV0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0002280 | OsLima_11g0002280.02 | Chr11 | 1634476 | 1638658 | + | NAM | ||
| CDS seq | atgggccagtgctgcacgggtggcgggaaggccgtcgccggcgacgaggcagagccggggacctccaaggcggcgccgccgagccgcggcacctcctccaaaaatgggtccgccaagcagcagccgtgctcgccggcggccaaggcggcggcgacggaagcggcggcggcggcgtcgtcgtccaagaagccggcaggccccatcggcgaggtgctggagcggccgatggaggaggttcgcacgacgtactccatcggcaaggagctcgggcgcgggcagttcggcgtgacccacctgtgcacccacaaggccaccggcgagaagctggcgtgcaagacgatcgcgaagcggaagctggcgaacaaggaggacgtcgacgacgtccgccgcgaggtgcagatcatgcaccacctctccggccagccaaacatcgtcgacctccgcggcgcctacgaggacaagcacaacgtccacctcgtgatggagctctgcgccggcggcgagctcttcgaccgcatcatcgcgcggggccactacacggagcgcgccgcggcggcgctcctccgcgccatcgtcgggatcgtgcacacctgccactccatgggggtgatccaccgggacctcaagccggagaacttcctgctgctgagcaagggggacgacgcgccgctcaaggccaccgacttcggcctctccgtcttcttcaaggaaggcgaggtgttccgcgacatcgtcggcagcgcctactacatcgcgccggaggtgctcaagaggaagtacggccccgaggccgacatctggagcatcggcgtcatgctctacatcttcctcgccggcgtgccgcccttctgggccgagtcggagaacgccatcttcaccgccatccttcgcggacagatcgacctcgccagtgagccatggccgaagatctcctctggagccaaggacctcgtcaggaagatgctcaacatcaaccccaaggagaggcttacagcattccaagtgctcaatcacccgtggatcaaagaagatggggatgctcctgatgtaccacttgacaatgttgttctcaacaggctcaagcagttcagggccatgaaccagttcaagaaagctgcactgaggattatagccggatgcctgtcagaggaggagatcaaggggctgaaggagatgttcaagaacatcgacaaggacaatagtgggaccattacgcttgaggagctcaaaaatgggttagcaaagcagggcaccaagttttcagacaacgaaattgagcaactgatggaagcagctgatgctgatggcaatggaattatcgactatgaggagttcgtcaccgcgacagtgcacatgaacaaaatggatcgagaagagcacctttacacggcattccagtactttgacaaggataatagtgggtacatcacaaaggaagagctcgagcaagccttgaaggaacaagggttatacgacgccaacgagatcaaggatgtcatcacagatgcagactctaataatgatgggcggatagattattcagagtttgtggccatgatgaggaaaggatcaggctgtgcagaagcaacaaacccaaagaagaagaggcgagatctagttgggctcaggttcatgtttggtcttgcacattgtcctggctag
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| Protein seq | MGQCCTGGGKAVAGDEAEPGTSKAAPPSRGTSSKNGSAKQQPCSPAAKAAATEAAAAASSSKKPAGPIGEVLERPMEEVRTTYSIGKELGRGQFGVTHLCTHKATGEKLACKTIAKRKLANKEDVDDVRREVQIMHHLSGQPNIVDLRGAYEDKHNVHLVMELCAGGELFDRIIARGHYTERAAAALLRAIVGIVHTCHSMGVIHRDLKPENFLLLSKGDDAPLKATDFGLSVFFKEGEVFRDIVGSAYYIAPEVLKRKYGPEADIWSIGVMLYIFLAGVPPFWAESENAIFTAILRGQIDLASEPWPKISSGAKDLVRKMLNINPKERLTAFQVLNHPWIKEDGDAPDVPLDNVVLNRLKQFRAMNQFKKAALRIIAGCLSEEEIKGLKEMFKNIDKDNSGTITLEELKNGLAKQGTKFSDNEIEQLMEAADADGNGIIDYEEFVTATVHMNKMDREEHLYTAFQYFDKDNSGYITKEELEQALKEQGLYDANEIKDVITDADSNNDGRIDYSEFVAMMRKGSGCAEATNPKKKRRDLVGLRFMFGLAHCPG
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0002280 | OsLima_11g0002280.01 | Chr11 | 1634476 | 1638757 | + | NAM | ||
| CDS seq | atgggccagtgctgcacgggtggcgggaaggccgtcgccggcgacgaggcagagccggggacctccaaggcggcgccgccgagccgcggcacctcctccaaaaatgggtccgccaagcagcagccgtgctcgccggcggccaaggcggcggcgacggaagcggcggcggcggcgtcgtcgtccaagaagccggcaggccccatcggcgaggtgctggagcggccgatggaggaggttcgcacgacgtactccatcggcaaggagctcgggcgcgggcagttcggcgtgacccacctgtgcacccacaaggccaccggcgagaagctggcgtgcaagacgatcgcgaagcggaagctggcgaacaaggaggacgtcgacgacgtccgccgcgaggtgcagatcatgcaccacctctccggccagccaaacatcgtcgacctccgcggcgcctacgaggacaagcacaacgtccacctcgtgatggagctctgcgccggcggcgagctcttcgaccgcatcatcgcgcggggccactacacggagcgcgccgcggcggcgctcctccgcgccatcgtcgggatcgtgcacacctgccactccatgggggtgatccaccgggacctcaagccggagaacttcctgctgctgagcaagggggacgacgcgccgctcaaggccaccgacttcggcctctccgtcttcttcaaggaaggcgaggtgttccgcgacatcgtcggcagcgcctactacatcgcgccggaggtgctcaagaggaagtacggccccgaggccgacatctggagcatcggcgtcatgctctacatcttcctcgccggcgtgccgcccttctgggccgagtcggagaacgccatcttcaccgccatccttcgcggacagatcgacctcgccagtgagccatggccgaagatctcctctggagccaaggacctcgtcaggaagatgctcaacatcaaccccaaggagaggcttacagcattccaagtgctcaatcacccgtggatcaaagaagatggggatgctcctgatgtaccacttgacaatgttgttctcaacaggctcaagcagttcagggccatgaaccagttcaagaaagctgcactgaggattatagccggatgcctgtcagaggaggagatcaaggggctgaaggagatgttcaagaacatcgacaaggacaatagtgggaccattacgcttgaggagctcaaaaatgggttagcaaagcagggcaccaagttttcagacaacgaaattgagcaactgatggaagcagctgatgctgatggcaatggaattatcgactatgaggagttcgtcaccgcgacagtgcacatgaacaaaatggatcgagaagagcacctttacacggcattccagtactttgacaaggataatagtgggtacatcacaaaggaagagctcgagcaagccttgaaggaacaagggttatacgacgccaacgagatcaaggatgtcatcacagatgcagactctaataatgatgggcggatagattattcagagtttgtggccatgatgaggaaaggatcaggctgtgcagaagcaacaaacccaaagaagaagaggcgagatctagttctatag
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| Protein seq | MGQCCTGGGKAVAGDEAEPGTSKAAPPSRGTSSKNGSAKQQPCSPAAKAAATEAAAAASSSKKPAGPIGEVLERPMEEVRTTYSIGKELGRGQFGVTHLCTHKATGEKLACKTIAKRKLANKEDVDDVRREVQIMHHLSGQPNIVDLRGAYEDKHNVHLVMELCAGGELFDRIIARGHYTERAAAALLRAIVGIVHTCHSMGVIHRDLKPENFLLLSKGDDAPLKATDFGLSVFFKEGEVFRDIVGSAYYIAPEVLKRKYGPEADIWSIGVMLYIFLAGVPPFWAESENAIFTAILRGQIDLASEPWPKISSGAKDLVRKMLNINPKERLTAFQVLNHPWIKEDGDAPDVPLDNVVLNRLKQFRAMNQFKKAALRIIAGCLSEEEIKGLKEMFKNIDKDNSGTITLEELKNGLAKQGTKFSDNEIEQLMEAADADGNGIIDYEEFVTATVHMNKMDREEHLYTAFQYFDKDNSGYITKEELEQALKEQGLYDANEIKDVITDADSNNDGRIDYSEFVAMMRKGSGCAEATNPKKKRRDLVL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0136600 | RBH | 0.109362 | 0.000000 | 2.461698 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g04170 | RBH | 0.073464 | 0.000000 | 0.629467 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0136600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0002400 | RBH | 0.000000 | 0.000000 | 1.456067 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0002440 | RBH | 0.0 | 0.0 | 2.033324 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0002420 | RBH | 0.155404 | 0.0 | 4.016366 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0002360 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0002350 | RBH | 0.376154 | 0.000000 | 1.402251 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0032800 | RBH | 0.3388175 | 3.705915 | 0.4095765 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0002400 | RBH | 0.0 | 0.0 | 1.320397 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0031600 | RBH | 0.127824 | 0.531464 | 1.238281 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0002280 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0002420 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0002410 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0002440 | RBH | 0.0 | 0.0 | 0.514098 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0002420 | RBH | 0.040558 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G002370 | RBH | 0.000000 | 0.000000 | 0.712009 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0002330 | RBH | 0.0 | 0.000000 | 7.863771 |
