Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_12g0002440 | OGI:12004620 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr12:1766055-1768477 | ||||||||
| Gene Symbol | CDPK25, OsCDPK25, OsCPK25, CDPK26, OsCDPK26, OsCPK26 | ||||||||||
| DNA seq | ctccgtcgccggagcaggcacgcgcgcatcccccgacgccatgggccagtgctgcacgggtggcgggaaggccgtcgccggcgacgaggcagagccagggacctccaaggcggcgccgccgagccgcggcacctcctccaaaaatgggtccgccaagcagcagccgtgctcgccggcggccaaggcggcggcggcggcgtcgtcgtccaagaagccggcaggccccatcggcgaggtgctggagcggccgatggaggaggttcgcacgacgtactccatcggcaaggagctcgggcgcgggcagttcggcgtgacccacctgtgcacccacaaggccaccggcgagaagctggcgtgcaagacgatcgcgaagcggaagctggcgaacaaggaggacgtcgacgacgtccgccgcgaggtgcagatcatgcaccacctctctggccagcccaacatcgtcgacctccgcggcgcctacgaggacaagcacaacgtccacctcgtgatggagctctgcgccggcggcgagctcttcgaccgcatcatcgcgcgtggccactacacggagcgcgccgcggcggcgctcctccgcgccatcgtcgggatcgtgcacacctgccactccatgggggtgatccaccgggacctcaagccggagaacttcctgctgctgagcaaaggggacgacgcgccgctcaaggccaccgacttcggcctctccgtcttcttcaaggaaggcgaggtgttccgcgacatcgtcggcagcgcctactacatcgcgccggaggtgctcaagaggaagtacggccccgaggccgacatctggagcatcggcgtcatgctctacatcttcctcgccggcgtgccgcccttctgggccgagtcagagaacgccatcttcaccgccatccttcgcggacagatcgacctcgccagtgagccatggccgaagatctcctctggagccaaggacctcgtcaggaagatgctcaacatcaaccccaaggagaggcttacagcattccaagtgctcagtaagtttatttgttacagattaattactcaaatctgctcctttttttttcatatagaggtacagtttggattaattttccctttattggtgtcagaattaaatttggattcatttggatcaatttggatttgcagatcacccgtggatcaaagaagatggggatgctcctgatgtaccacttgacaatgttgttctcaacaggctcaagcagttcagggccatgaaccagttcaagaaagctgcactgagggtaaatattactcttaatcacatcatcagggtagatatatgcatcttaattgttgttttgaatcttctgtagattatagccggatgcctgtcagaggaggagatcaaggggctgaaggagatgttcaagaacatcgacaaggacaatagtgggaccattacgcttgaggagctcaaaaatgggttagcaaagcagggcaccaagttttcagacaacgaaattgagcaactgatggaagcagtgagtcctcatagtgaagctacaaacttcagttcagttcgagatgaaatgctaaaactgacaggactggaaattcctttcaactttcaggctgatgctgatggcaatggaattattgactatgaggagttcgtcaccgcgacagtgcacatgaacaaaatggatcgagaagagcacctttacacggcattccagtactttgacaaggataatagtgggtaagttaaggatagcaaaaactgatataactgaattctgaacttcagggatttgtacacatttattccatccctcttgcaggtacatcacaaaggaagagctcgagcaagccttgaaggaacaagggttatacgacgccaacgagatcaaggatgtcatcacagatgcagactctaataatgtaaggaagaaatgctctttaaattgtgttcatgcaaaacagatgaaatcgataaagctgaaaatatttgtcctatcaagagacgctgaatgcattttgcacatgtaggatgggcggatagattattcagagtttgtggccatgatgaggaaaggatcaggctgtgcagaagcaacaaacccaaagaagaagaggcgagatctagttctatagcgaaacagggtagtgtgtatagtggccggtttgtgcacaatttcaaacatgatgtgcatttaccacgagtgtaatgtatacaatggaattttctttccaattgcatatttgcatttcaggttgggctcaggttcatgtttggtcttgcacattgtcctggctagttgttgggaagatggatttgttccttctttctgttcagtcatcttgtacactacatgattgaatcctacctgattagaaagcccaaaagattactggtacattcaacaagaacagagaaa
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| CDS seq | atgggccagtgctgcacgggtggcgggaaggccgtcgccggcgacgaggcagagccagggacctccaaggcggcgccgccgagccgcggcacctcctccaaaaatgggtccgccaagcagcagccgtgctcgccggcggccaaggcggcggcggcggcgtcgtcgtccaagaagccggcaggccccatcggcgaggtgctggagcggccgatggaggaggttcgcacgacgtactccatcggcaaggagctcgggcgcgggcagttcggcgtgacccacctgtgcacccacaaggccaccggcgagaagctggcgtgcaagacgatcgcgaagcggaagctggcgaacaaggaggacgtcgacgacgtccgccgcgaggtgcagatcatgcaccacctctctggccagcccaacatcgtcgacctccgcggcgcctacgaggacaagcacaacgtccacctcgtgatggagctctgcgccggcggcgagctcttcgaccgcatcatcgcgcgtggccactacacggagcgcgccgcggcggcgctcctccgcgccatcgtcgggatcgtgcacacctgccactccatgggggtgatccaccgggacctcaagccggagaacttcctgctgctgagcaaaggggacgacgcgccgctcaaggccaccgacttcggcctctccgtcttcttcaaggaaggcgaggtgttccgcgacatcgtcggcagcgcctactacatcgcgccggaggtgctcaagaggaagtacggccccgaggccgacatctggagcatcggcgtcatgctctacatcttcctcgccggcgtgccgcccttctgggccgagtcagagaacgccatcttcaccgccatccttcgcggacagatcgacctcgccagtgagccatggccgaagatctcctctggagccaaggacctcgtcaggaagatgctcaacatcaaccccaaggagaggcttacagcattccaagtgctcaatcacccgtggatcaaagaagatggggatgctcctgatgtaccacttgacaatgttgttctcaacaggctcaagcagttcagggccatgaaccagttcaagaaagctgcactgaggattatagccggatgcctgtcagaggaggagatcaaggggctgaaggagatgttcaagaacatcgacaaggacaatagtgggaccattacgcttgaggagctcaaaaatgggttagcaaagcagggcaccaagttttcagacaacgaaattgagcaactgatggaagcagtgagtcctcatagtgaagctacaaacttcagttcagttcgagatgaaatgctaaaactgacaggactggaaattcctttcaactttcaggctgatgctgatggcaatggaattattgactatgaggagttcgtcaccgcgacagtgcacatgaacaaaatggatcgagaagagcacctttacacggcattccagtactttgacaaggataatagtgggtacatcacaaaggaagagctcgagcaagccttgaaggaacaagggttatacgacgccaacgagatcaaggatgtcatcacagatgcagactctaataatgatgggcggatagattattcagagtttgtggccatgatgaggaaaggatcaggctgtgcagaagcaacaaacccaaagaagaagaggcgagatctagttctatag
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| Protein seq | MGQCCTGGGKAVAGDEAEPGTSKAAPPSRGTSSKNGSAKQQPCSPAAKAAAAASSSKKPAGPIGEVLERPMEEVRTTYSIGKELGRGQFGVTHLCTHKATGEKLACKTIAKRKLANKEDVDDVRREVQIMHHLSGQPNIVDLRGAYEDKHNVHLVMELCAGGELFDRIIARGHYTERAAAALLRAIVGIVHTCHSMGVIHRDLKPENFLLLSKGDDAPLKATDFGLSVFFKEGEVFRDIVGSAYYIAPEVLKRKYGPEADIWSIGVMLYIFLAGVPPFWAESENAIFTAILRGQIDLASEPWPKISSGAKDLVRKMLNINPKERLTAFQVLNHPWIKEDGDAPDVPLDNVVLNRLKQFRAMNQFKKAALRIIAGCLSEEEIKGLKEMFKNIDKDNSGTITLEELKNGLAKQGTKFSDNEIEQLMEAVSPHSEATNFSSVRDEMLKLTGLEIPFNFQADADGNGIIDYEEFVTATVHMNKMDREEHLYTAFQYFDKDNSGYITKEELEQALKEQGLYDANEIKDVITDADSNNDGRIDYSEFVAMMRKGSGCAEATNPKKKRRDLVL |
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| Function | Calcium-dependent protein kinase 25 [UniProtKB/Swiss-Prot:Q2RAV0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_12g0002440 | OsLiXu_12g0002440.02 | Chr12 | 1766055 | 1768477 | + | NAM | ||
| CDS seq | atgggccagtgctgcacgggtggcgggaaggccgtcgccggcgacgaggcagagccagggacctccaaggcggcgccgccgagccgcggcacctcctccaaaaatgggtccgccaagcagcagccgtgctcgccggcggccaaggcggcggcggcggcgtcgtcgtccaagaagccggcaggccccatcggcgaggtgctggagcggccgatggaggaggttcgcacgacgtactccatcggcaaggagctcgggcgcgggcagttcggcgtgacccacctgtgcacccacaaggccaccggcgagaagctggcgtgcaagacgatcgcgaagcggaagctggcgaacaaggaggacgtcgacgacgtccgccgcgaggtgcagatcatgcaccacctctctggccagcccaacatcgtcgacctccgcggcgcctacgaggacaagcacaacgtccacctcgtgatggagctctgcgccggcggcgagctcttcgaccgcatcatcgcgcgtggccactacacggagcgcgccgcggcggcgctcctccgcgccatcgtcgggatcgtgcacacctgccactccatgggggtgatccaccgggacctcaagccggagaacttcctgctgctgagcaaaggggacgacgcgccgctcaaggccaccgacttcggcctctccgtcttcttcaaggaaggcgaggtgttccgcgacatcgtcggcagcgcctactacatcgcgccggaggtgctcaagaggaagtacggccccgaggccgacatctggagcatcggcgtcatgctctacatcttcctcgccggcgtgccgcccttctgggccgagtcagagaacgccatcttcaccgccatccttcgcggacagatcgacctcgccagtgagccatggccgaagatctcctctggagccaaggacctcgtcaggaagatgctcaacatcaaccccaaggagaggcttacagcattccaagtgctcaatcacccgtggatcaaagaagatggggatgctcctgatgtaccacttgacaatgttgttctcaacaggctcaagcagttcagggccatgaaccagttcaagaaagctgcactgaggattatagccggatgcctgtcagaggaggagatcaaggggctgaaggagatgttcaagaacatcgacaaggacaatagtgggaccattacgcttgaggagctcaaaaatgggttagcaaagcagggcaccaagttttcagacaacgaaattgagcaactgatggaagcagtgagtcctcatagtgaagctacaaacttcagttcagttcgagatgaaatgctaaaactgacaggactggaaattcctttcaactttcaggctgatgctgatggcaatggaattattgactatgaggagttcgtcaccgcgacagtgcacatgaacaaaatggatcgagaagagcacctttacacggcattccagtactttgacaaggataatagtgggtacatcacaaaggaagagctcgagcaagccttgaaggaacaagggttatacgacgccaacgagatcaaggatgtcatcacagatgcagactctaataatgatgggcggatagattattcagagtttgtggccatgatgaggaaaggatcaggctgtgcagaagcaacaaacccaaagaagaagaggcgagatctagttctatag
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| Protein seq | MGQCCTGGGKAVAGDEAEPGTSKAAPPSRGTSSKNGSAKQQPCSPAAKAAAAASSSKKPAGPIGEVLERPMEEVRTTYSIGKELGRGQFGVTHLCTHKATGEKLACKTIAKRKLANKEDVDDVRREVQIMHHLSGQPNIVDLRGAYEDKHNVHLVMELCAGGELFDRIIARGHYTERAAAALLRAIVGIVHTCHSMGVIHRDLKPENFLLLSKGDDAPLKATDFGLSVFFKEGEVFRDIVGSAYYIAPEVLKRKYGPEADIWSIGVMLYIFLAGVPPFWAESENAIFTAILRGQIDLASEPWPKISSGAKDLVRKMLNINPKERLTAFQVLNHPWIKEDGDAPDVPLDNVVLNRLKQFRAMNQFKKAALRIIAGCLSEEEIKGLKEMFKNIDKDNSGTITLEELKNGLAKQGTKFSDNEIEQLMEAVSPHSEATNFSSVRDEMLKLTGLEIPFNFQADADGNGIIDYEEFVTATVHMNKMDREEHLYTAFQYFDKDNSGYITKEELEQALKEQGLYDANEIKDVITDADSNNDGRIDYSEFVAMMRKGSGCAEATNPKKKRRDLVL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_12g0002440 | OsLiXu_12g0002440.01 | Chr12 | 1766055 | 1768477 | + | NAM | ||
| CDS seq | atgggccagtgctgcacgggtggcgggaaggccgtcgccggcgacgaggcagagccagggacctccaaggcggcgccgccgagccgcggcacctcctccaaaaatgggtccgccaagcagcagccgtgctcgccggcggccaaggcggcggcggcggcgtcgtcgtccaagaagccggcaggccccatcggcgaggtgctggagcggccgatggaggaggttcgcacgacgtactccatcggcaaggagctcgggcgcgggcagttcggcgtgacccacctgtgcacccacaaggccaccggcgagaagctggcgtgcaagacgatcgcgaagcggaagctggcgaacaaggaggacgtcgacgacgtccgccgcgaggtgcagatcatgcaccacctctctggccagcccaacatcgtcgacctccgcggcgcctacgaggacaagcacaacgtccacctcgtgatggagctctgcgccggcggcgagctcttcgaccgcatcatcgcgcgtggccactacacggagcgcgccgcggcggcgctcctccgcgccatcgtcgggatcgtgcacacctgccactccatgggggtgatccaccgggacctcaagccggagaacttcctgctgctgagcaaaggggacgacgcgccgctcaaggccaccgacttcggcctctccgtcttcttcaaggaaggcgaggtgttccgcgacatcgtcggcagcgcctactacatcgcgccggaggtgctcaagaggaagtacggccccgaggccgacatctggagcatcggcgtcatgctctacatcttcctcgccggcgtgccgcccttctgggccgagtcagagaacgccatcttcaccgccatccttcgcggacagatcgacctcgccagtgagccatggccgaagatctcctctggagccaaggacctcgtcaggaagatgctcaacatcaaccccaaggagaggcttacagcattccaagtgctcaatcacccgtggatcaaagaagatggggatgctcctgatgtaccacttgacaatgttgttctcaacaggctcaagcagttcagggccatgaaccagttcaagaaagctgcactgaggattatagccggatgcctgtcagaggaggagatcaaggggctgaaggagatgttcaagaacatcgacaaggacaatagtgggaccattacgcttgaggagctcaaaaatgggttagcaaagcagggcaccaagttttcagacaacgaaattgagcaactgatggaagcagctgatgctgatggcaatggaattattgactatgaggagttcgtcaccgcgacagtgcacatgaacaaaatggatcgagaagagcacctttacacggcattccagtactttgacaaggataatagtgggtacatcacaaaggaagagctcgagcaagccttgaaggaacaagggttatacgacgccaacgagatcaaggatgtcatcacagatgcagactctaataatgatgggcggatagattattcagagtttgtggccatgatgaggaaaggatcaggctgtgcagaagcaacaaacccaaagaagaagaggcgagatctagttctatag
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| Protein seq | MGQCCTGGGKAVAGDEAEPGTSKAAPPSRGTSSKNGSAKQQPCSPAAKAAAAASSSKKPAGPIGEVLERPMEEVRTTYSIGKELGRGQFGVTHLCTHKATGEKLACKTIAKRKLANKEDVDDVRREVQIMHHLSGQPNIVDLRGAYEDKHNVHLVMELCAGGELFDRIIARGHYTERAAAALLRAIVGIVHTCHSMGVIHRDLKPENFLLLSKGDDAPLKATDFGLSVFFKEGEVFRDIVGSAYYIAPEVLKRKYGPEADIWSIGVMLYIFLAGVPPFWAESENAIFTAILRGQIDLASEPWPKISSGAKDLVRKMLNINPKERLTAFQVLNHPWIKEDGDAPDVPLDNVVLNRLKQFRAMNQFKKAALRIIAGCLSEEEIKGLKEMFKNIDKDNSGTITLEELKNGLAKQGTKFSDNEIEQLMEAADADGNGIIDYEEFVTATVHMNKMDREEHLYTAFQYFDKDNSGYITKEELEQALKEQGLYDANEIKDVITDADSNNDGRIDYSEFVAMMRKGSGCAEATNPKKKRRDLVL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr12 | 1767413 | 1767798 | + | OsLiXu_12g0002440.02 | OsLiXu_12g0002440.02,OsLiXu_12g0002440.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.514098 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0133500 | RBH | 0.126042 | 0.000000 | 3.070934 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g03970 | RBH | 0.088432 | 0.000000 | 0.814708 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0133500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0002230 | RBH | 0.0 | 0.0 | 1.758496 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0002440 | RBH | 0.0 | 0.0 | 2.033324 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0002450 | RBH | 0.000000 | 0.0 | 4.423885 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0002260 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0002510 | RBH | 0.580640 | 0.000000 | 4.526545 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0028400 | RBH | 0.14731 | 0.462524 | 0.1535865 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0002490 | RBH | 0.0 | 0.158854 | 2.677590 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0030000 | RBH | 0.237845 | 0.442648 | 0.860098 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0002280 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0002500 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0002520 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0002340 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0002440 | RBH | 0.039223 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G002340 | RBH | 0.000000 | 0.0 | 1.808952 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0002590 | RBH | 0.0 | 0.0 | 5.500274 |
