Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLima_10g0018390 OGI:10064490 | 16/16 LIMA | Os127564RS1 | Gramene(+IsoSeq) Chr10:23394461-23399662
Gene Symbol DSK2B, OsDSK2b, RIF2
DNA seq

AGATGAAATGAACTGAACTGCAATTCTGCAAATATCATACACAAACGTTCAGAGTAATTCATGAACATTTCCACGTCAAATCTGACTGCTCCATTATCGAGCACAGCCTCTGAACTTTAACCAGAAAAGAAAAAAAAAATGGTGCAGTAACCTATCATGTATTTGCCAATAGAATCCCGAGAGCAGTGCAAATGTCAAATGGATAGAGCAACCAACAGAGAAGACACAGCACTAGCATGGCAGCTGCCTTGTCTAGAACAAGGCCAGCTACCTTAATTACCTTATGCCTAGAAGAACAAGGCTGCGTTATGATTTATGAAGATACCCCAAAACACAAGAAGGCATCAACATACATCTTGAGGATTGGGAGCCGACAATTGCAAAGGTAGACCCATATTCTATGCGGTAAGATCCGATAATTTCATATGTATGTACATCAACCCAAATAGTCAAATACAACACGGTAAAAACAAAGGCATGACGACCATGTATGGAAAAGTTAATGGTGGGGGTGGGATTTCTTTGTTTTATTTTCTCCTGAGACTGTAGACAGACGCTGCGTTTGAACTTGGAGGGGCTAAAAAACCTCTTGCAAAAGAGCGGAGTTGGTGACGTTATGGGCAGCGTCTGGTACGCTTTAGCTACTGGCCAAGATTGCCAAGAAGACGCTCCACCGCAGCATTCACATTCCCAGCAGTTGCGACTAGCGCCTGGATGTTCTCTGCAGTGTCGATGAAACCCATCTCTCGGAGCTGAGTGAGCTGTGTTGCATACAGTTCTTCCGGTGGAACTGAATCACAAGTGTAAAACCATAATTAGTGATGATACAAAAACATGGAAGATGATAAAGAGTTACTATACAAACCATTGGATGTATTGGGTACACCTATGCCACCTCCAGCACCAAGCCCACTAAGCATGCCCATCAAGGTGTCGAGGCTAACATTTCCCCGCATGCCTGCATTTTATTTCATTGGCATTTGCCACATTACTTAACAAAAAGGTGAAAAAAAATGCATTTGTAAGAATTTAATTATCAAATGCTCAGTACTCGAATTACCACTACACATCTAACATTGCTCCACAATTTAGAAGGCAGTACAGTTGACTACACAAACAACTCGTATAATCTCTTCCATACCAATATAGCACAGTCAAGCAGCTAAAGAGCTCAGACACGTTCAACACATAACAGATTACTTAAATGGAACTATGGTTGTGACTAAAGGTGTAGGGAGCTCTCATCCATTCTCCAATAATCAAATCCACAAGCAGCATTCAGTCATAGGCAACCCATTTCCATTTCTAAGTAAGGAAAAAAAATCATACATGTGTCACGCATCACCCCAAAGACCTTGTTTTGCGATCCCCAAAACGAGGCCTGGTCGCACGGTCGCACCATATCGATCATTGATATTTCTTTTTTTCCAATATTTCAAGGAAACTCAAATTTAGAAATTCCAATGTTATGCACCACAATAAGGTAGTGTCAAGAATCAACCACTAGTAATAATCATCATAATGTGTTCATATAATGTAATGGCCTTATGGAAGAACGGAAATCTTGAAGAACTAATACAGGTCAACCAAGCAGTGAAAGAAAGGCAACTATTGGTGCTAGAACAAACCACCACTAAAAGATAACTCAGTACGCACTAAAACTTATGTAAAACCTGACATACTAATCCATCTTAAAACAAGAAAAGATATTAGATGGTGCATATTAAAAAAACAATCAAGAGAAAATACCTGTCGCATTGCCTCCTTGGCTACCATCCCTGAATCAAGAAACTCAAAAGATAATTAACAAACACATAATGAAAGAAATACAGTATAAATGAGCTAGATGCAATTCAGGTACTGTTGAACAAGAGTTACTCACTGCCTAGGTTGATTTTGACCAAGCTGTGATAATAATGTCTGCTGGAACGAGAGTAATTGCTGCCAAAAAAGGGAAAGTTAATCTAGATAGAGATGGAGCTAGCCACATACATAAAACGTAACATATGTTACCTGCATAGTTTCTGGGGATGTAAGCTGGCGAATAAATTCTGGATTTTGGAACATTTCCCTCAACTGAGTGTTTGATTCCATGAGGTTGCGTGTATTTGGGTTGAAGTTAAGCAACTGTGGACATTTTAAATTACAGAATGATCTGAAGTTATGACTCTAACATCATCAAAGTTATATAACAAAATAAGTTGAGAAATACCGTACCTGGTTCATGGACTGTGGATCAGACATGATATTCTGCATCATCTGCATCATAACAGGGTTTTGCAAAATCTGGCTCAAGGAAGAAGAATCAGGAGAACCACCAAGCAAACTTCCCAAATCTGCTGAACCCAACCCTCCTAGACCACCAGTAGCACCAGTTCCTGTATTACCGGCAAGACCACCAAATAAACTGCTCAGATCAGCTGACCCCAACCCTCCAAGGCCCCCAGTGGCACCGGTTCTTGCATTGCCAGTAGAACCTGCCCGTGTTGCTCCTTGCGCACCTCCAGCTGTCAATTTAAGTGTGAAAAAACAATAGATATATAGATTATCAAAAACAGAATAAACAAGAGGATTGAGAACATACCATTGGAGCTCCAAGGATTTGGAAGTGGATTAGTGTTTGGAGCAGGGGTTCCTGTTGTAGACTCTGAGCCAGTATTTGGAGCATTTGTAGCAGGATCCCTTGGTTGGTTAGAACCCTGATTTCCAAGAAGAGCTGAGAATGGGTTTGGAGCTGTGTTGCCTTCTCCACCCATTGTTGTCGCATTTAGGAAAGGCTCCTGGACAGTTTCATACATGCGTCGGAGCATATTAAACCCTTCAGGAGAAGACTCAATGTTGCTCATTGCTCTGTCTGTGTTCCGCATCATCTCCCTCATGATTTCAGGGTTTCTGGCTGCTTCAAGGGTCTGGCGGAGAACACTTGGATCATTGAGAACATGAGCAAGATCTGGATTCCGGTCGATGATATCACGCATTTGAGGATTGTTCATGATCATGTTACGAATTAAATCAGGGTTATTCATGAGATTCTGCATCATTGGCATATTCATTATTTCCCTCATTAAGTTGGGGTTTTGGCTTAACTGCTGCTGCATTTGATCCAATTCTGGAAATCCAGACCCAAAAAGACCAGATGGCCTGGTACCAGCAGTTCCTGTACCACCAAGGCCAGGAAACAAACTTCCAAGACCATCTGTTGGGCCGCTGCTAGGAGCAGCTGAAGCTTGGGGGCTGGCTGCAGCAGGTGCAGCTGATCCGGCTGGGGGACCAGCGCCACGCACCATATGAATGGTATGATCTGTTTCAACACCTACAAAATATAAGGAGTGTGAGAAGCAAGAAAAGAATTATGCTTGATAAGTCAGAAATTTGAACAGCGGGCCAGCATATCTACATAAACAAAGAATATTCCAATATCTGATGTAATCATATACAAGAGAATTACAAATGAAAACTTCTAAAGAATTCACATGTGAGAGACTAAAGAAGATAGTGCATCGGATGACTATGCCATAAATCCTCATTTATGGCATGTTAACATACTTAGCGTACCCAATATTTCGTATTACATGAGAATTACTTGGTACTCTCTCATAAAAGGTAACAATTTTCCCAGAAGATGTTTTTCTTTTTTGTTAAGGCATCATTGATTCAACGCATTTATTTAGCAGCATTCCACAATGTAAGGATGTTCAGAACATGTCTTTTGAAAGTTGTTCCCTTCTTTTCCTCAAATACACATGCACGATTGGCCAATTAACTAACGTTTTCCTCATATGGAAGTTTTTGCATAGCAAGAAGCTACAATCATAATCAATGTAATAATTAGTTAGCATCATTACCCGCTGAAAATAAATATGAAACCATGAGCTGACATAAATACGAGTTCCAAACATATATACACTTCCTGTGAATCAGCAAACGTACTAATTTATTGTAACAGTAGCACTAGAGAAACAGATTCACGTTTTCCTTTTTTTTCAAAAGACAGCCCACTGCTTAGTTCCATTAAACAGAACAATTGTTTGGTTTACTGTTCTCGGTCACTACTTTGTAATCAACGGAAAGAAAAGGATGATTTTACATTTGGTGAACCCATTTCCATAGCAGGGTTGTGCACTTAACCAAATAGTGTTTAAGAAAAATTGTTCAGTTGCATTGCAAACAACAAATTGAAGTATTTACTTGTATTTGCACTTCATAAACTACATTCAATAATAAAGTGCACTCTACCCAAAGTTCACAGATAAAAATAAAGCCCATATGATGCTTCATGAGAAAATAAATTAACTTCCACTACAACTCCAAGAAGATTCTAAGATGTCACACATTGCGACATAATAACAACGTATGCGTAACTAATACGAGCAGGAGCTTACATGGCCCCATAAGTCCATAACATTTGGAACTATATTCGAGTCGCGACAAGATGAGCTGCCTTCAGCTTCTTCATCATCTTATACGCTACGTAAGAGTAACCGTTCCGTTCGCAGTATACATTATCATTAATACACTACACACTCTATACTCGCATCACCCAATCACCAATAACTGTGTAGAGAAGCAAAGCATATCGACGAATCTGTTTCGCTAGCATGCATAGGGCACCGAAGCGGATTGCTGCACCTTGTCCCCCATGAACAGGAGCCCCAGGTATAAACAGGCATTGCATCGACAAAGCTAAATCGCGGCTACTTACAACTACACGACTGAAATCGAGCACGTAGCATGTCAATTCCAACCCATCGGACCAAAAATCCTGACGATTTGATGGGTTTTTTTTCTCCTCCTCTACCTAACAGTCCTAGACACTCACCATAGCTTTCTAGGGTTTGCTCGTCCTTGAGGATCCGGCCCTTGTAGATCAGGCGCTGCTGCGCCGCCGGCACGTCGCAGCTCCCCGCCACCACCTCCTTGAACGCCCCCACCGTGGCGTCGAGGTCGGCCCGCACGGTGAACTTGGACCCGTTCGCGCACCGGATGTGCAGCGCCGCGGCCCCCGCCACCGCCACCGCCGCAGCCGCAGCAGGAGAGGACTCCCCTCCGTCGCCGCCCCCGGCCTCGCCTCCTCCGCCGCCCATGCCGTCGACCTCGGCCCGATCCGCTCGGAGTCGGCGGCCTCGCCTCCGATTCGGGGTCGCGTCGCGTCGCGTGCGTGTGCGCGTGAGCTCGAGAGGGGAAGAAGAGGAGGAAGGAGAA

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CDS seq

ATGGGCGGCGGAGGAGGCGAGGCCGGGGGCGGCGACGGAGGGGAGTCCTCTCCTGCTGCGGCTGCGGCGGTGGCGGTGGCGGGGGCCGCGGCGCTGCACATCCGGTGCGCGAACGGGTCCAAGTTCACCGTGCGGGCCGACCTCGACGCCACGGTGGGGGCGTTCAAGGAGGTGGTGGCGGGGAGCTGCGACGTGCCGGCGGCGCAGCAGCGCCTGATCTACAAGGGCCGGATCCTCAAGGACGAGCAAACCCTAGAAAGCTATGGTGTTGAAACAGATCATACCATTCATATGGTGCGTGGCGCTGGTCCCCCAGCCGGATCAGCTGCACCTGCTGCAGCCAGCCCCCAAGCTTCAGCTGCTCCTAGCAGCGGCCCAACAGATGGTCTTGGAAGTTTGTTTCCTGGCCTTGGTGGTACAGGAACTGCTGGTACCAGGCCATCTGGTCTTTTTGGGTCTGGATTTCCAGAATTGGATCAAATGCAGCAGCAGTTAAGCCAAAACCCCAACTTAATGAGGGAAATAATGAATATGCCAATGATGCAGAATCTCATGAATAACCCTGATTTAATTCGTAACATGATCATGAACAATCCTCAAATGCGTGATATCATCGACCGGAATCCAGATCTTGCTCATGTTCTCAATGATCCAAGTGTTCTCCGCCAGACCCTTGAAGCAGCCAGAAACCCTGAAATCATGAGGGAGATGATGCGGAACACAGACAGAGCAATGAGCAACATTGAGTCTTCTCCTGAAGGGTTTAATATGCTCCGACGCATGTATGAAACTGTCCAGGAGCCTTTCCTAAATGCGACAACAATGGGTGGAGAAGGCAACACAGCTCCAAACCCATTCTCAGCTCTTCTTGGAAATCAGGGTTCTAACCAACCAAGGGATCCTGCTACAAATGCTCCAAATACTGGCTCAGAGTCTACAACAGGAACCCCTGCTCCAAACACTAATCCACTTCCAAATCCTTGGAGCTCCAATGCTGGAGGTGCGCAAGGAGCAACACGGGCAGGTTCTACTGGCAATGCAAGAACCGGTGCCACTGGGGGCCTTGGAGGGTTGGGGTCAGCTGATCTGAGCAGTTTATTTGGTGGTCTTGCCGGTAATACAGGAACTGGTGCTACTGGTGGTCTAGGAGGGTTGGGTTCAGCAGATTTGGGAAGTTTGCTTGGTGGTTCTCCTGATTCTTCTTCCTTGAGCCAGATTTTGCAAAACCCTGTTATGATGCAGATGATGCAGAATATCATGTCTGATCCACAGTCCATGAACCAGTTGCTTAACTTCAACCCAAATACACGCAACCTCATGGAATCAAACACTCAGTTGAGGGAAATGTTCCAAAATCCAGAATTTATTCGCCAGCTTACATCCCCAGAAACTATGCAGCAATTACTCTCGTTCCAGCAGACATTATTATCACAGCTTGGTCAAAATCAACCTAGGCAGGATGGTAGCCAAGGAGGCAATGCGACAGGCATGCGGGGAAATGTTAGCCTCGACACCTTGATGGGCATGCTTAGTGGGCTTGGTGCTGGAGGTGGCATAGGTGTACCCAATACATCCAATGTTCCACCGGAAGAACTGTATGCAACACAGCTCACTCAGCTCCGAGAGATGGGTTTCATCGACACTGCAGAGAACATCCAGACGCTGCCCATAACGTCACCAACTCCGCTCTTTTGCAAGAGGTTTTTTAGCCCCTCCAAGTTCAAACGCAGCGTCTGTCTACAGTCTCAGGAGAAAATAAAACAAAGAAATCCCACCCCCACCATTAACTTTTCCATACATGGTCGTCATGCCTTTGTTTTTACCGTGTTGTATTTGACTATTTGGGTTGATGTACATACATATGAAATTATCGGATCTTACCGCATAGAATATGGGTCTACCTTTGCAATTGTCGGCTCCCAATCCTCAAGATGTATGTTGATGCCTTCTTGTGTTTTGGGGTATCTTCATAAATCATAA

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Protein seq

MGGGGGEAGGGDGGESSPAAAAAVAVAGAAALHIRCANGSKFTVRADLDATVGAFKEVVAGSCDVPAAQQRLIYKGRILKDEQTLESYGVETDHTIHMVRGAGPPAGSAAPAAASPQASAAPSSGPTDGLGSLFPGLGGTGTAGTRPSGLFGSGFPELDQMQQQLSQNPNLMREIMNMPMMQNLMNNPDLIRNMIMNNPQMRDIIDRNPDLAHVLNDPSVLRQTLEAARNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATTMGGEGNTAPNPFSALLGNQGSNQPRDPATNAPNTGSESTTGTPAPNTNPLPNPWSSNAGGAQGATRAGSTGNARTGATGGLGGLGSADLSSLFGGLAGNTGTGATGGLGGLGSADLGSLLGGSPDSSSLSQILQNPVMMQMMQNIMSDPQSMNQLLNFNPNTRNLMESNTQLREMFQNPEFIRQLTSPETMQQLLSFQQTLLSQLGQNQPRQDGSQGGNATGMRGNVSLDTLMGMLSGLGAGGGIGVPNTSNVPPEELYATQLTQLREMGFIDTAENIQTLPITSPTPLFCKRFFSPSKFKRSVCLQSQEKIKQRNPTPTINFSIHGRHAFVFTVLYLTIWVDVHTYEIIGSYRIEYGSTFAIVGSQSSRCMLMPSCVLGYLHKS

Function Ubiquitin domain-containing protein DSK2b [UniProtKB/Swiss-Prot:Q9SII8]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLima_10g0018390 OsLima_10g0018390.06 Chr10 23395730 23399662 - NAM
CDS seq

ATGGGCGGCGGAGGAGGCGAGGCCGGGGGCGGCGACGGAGGGGAGTCCTCTCCTGCTGCGGCTGCGGCGGTGGCGGTGGCGGGGGCCGCGGCGCTGCACATCCGGTGCGCGAACGGGTCCAAGTTCACCGTGCGGGCCGACCTCGACGCCACGGTGGGGGCGTTCAAGGAGGTGGTGGCGGGGAGCTGCGACGTGCCGGCGGCGCAGCAGCGCCTGATCTACAAGGGCCGGATCCTCAAGGACGAGCAAACCCTAGAAAGCTATGGTGTTGAAACAGATCATACCATTCATATGGTGCGTGGCGCTGGTCCCCCAGCCGGATCAGCTGCACCTGCTGCAGCCAGCCCCCAAGCTTCAGCTGCTCCTAGCAGCGGCCCAACAGATGGTCTTGGAAGTTTGTTTCCTGGCCTTGGTGGTACAGGAACTGCTGGTACCAGGCCATCTGGTCTTTTTGGGTCTGGATTTCCAGAATTGGATCAAATGCAGCAGCAGTTAAGCCAAAACCCCAACTTAATGAGGGAAATAATGAATATGCCAATGATGCAGAATCTCATGAATAACCCTGATTTAATTCGTAACATGATCATGAACAATCCTCAAATGCGTGATATCATCGACCGGAATCCAGATCTTGCTCATGTTCTCAATGATCCAAGTGTTCTCCGCCAGACCCTTGAAGCAGCCAGAAACCCTGAAATCATGAGGGAGATGATGCGGAACACAGACAGAGCAATGAGCAACATTGAGTCTTCTCCTGAAGGGTTTAATATGCTCCGACGCATGTATGAAACTGTCCAGGAGCCTTTCCTAAATGCGACAACAATGGGTGGAGAAGGCAACACAGCTCCAAACCCATTCTCAGCTCTTCTTGGAAATCAGGGTTCTAACCAACCAAGGGATCCTGCTACAAATGCTCCAAATACTGGCTCAGAGTCTACAACAGGAACCCCTGCTCCAAACACTAATCCACTTCCAAATCCTTGGAGCTCCAATGCTGGAGGTGCGCAAGGAGCAACACGGGCAGGTTCTACTGGCAATGCAAGAACCGGTGCCACTGGGGGCCTTGGAGGGTTGGGGTCAGCTGATCTGAGCAGTTTATTTGGTGGTCTTGCCGGTAATACAGGAACTGGTGCTACTGGTGGTCTAGGAGGGTTGGGTTCAGCAGATTTGGGAAGTTTGCTTGGTGGTTCTCCTGATTCTTCTTCCTTGAGCCAGATTTTGCAAAACCCTGTTATGATGCAGATGATGCAGAATATCATGTCTGATCCACAGTCCATGAACCAGTTGCTTAACTTCAACCCAAATACACGCAACCTCATGGAATCAAACACTCAGTTGAGGGAAATGTTCCAAAATCCAGAATTTATTCGCCAGCTTACATCCCCAGAAACTATGCAGGTAACATATGTTACGTTTTATGTATGTGGCTAG

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Protein seq

MGGGGGEAGGGDGGESSPAAAAAVAVAGAAALHIRCANGSKFTVRADLDATVGAFKEVVAGSCDVPAAQQRLIYKGRILKDEQTLESYGVETDHTIHMVRGAGPPAGSAAPAAASPQASAAPSSGPTDGLGSLFPGLGGTGTAGTRPSGLFGSGFPELDQMQQQLSQNPNLMREIMNMPMMQNLMNNPDLIRNMIMNNPQMRDIIDRNPDLAHVLNDPSVLRQTLEAARNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATTMGGEGNTAPNPFSALLGNQGSNQPRDPATNAPNTGSESTTGTPAPNTNPLPNPWSSNAGGAQGATRAGSTGNARTGATGGLGGLGSADLSSLFGGLAGNTGTGATGGLGGLGSADLGSLLGGSPDSSSLSQILQNPVMMQMMQNIMSDPQSMNQLLNFNPNTRNLMESNTQLREMFQNPEFIRQLTSPETMQVTYVTFYVCG

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Gene Transcript Chromosome Start End Strand Source
OsLima_10g0018390 OsLima_10g0018390.02 Chr10 23394461 23399662 - NAM
CDS seq

ATGGGCGGCGGAGGAGGCGAGGCCGGGGGCGGCGACGGAGGGGAGTCCTCTCCTGCTGCGGCTGCGGCGGTGGCGGTGGCGGGGGCCGCGGCGCTGCACATCCGGTGCGCGAACGGGTCCAAGTTCACCGTGCGGGCCGACCTCGACGCCACGGTGGGGGCGTTCAAGGAGGTGGTGGCGGGGAGCTGCGACGTGCCGGCGGCGCAGCAGCGCCTGATCTACAAGGGCCGGATCCTCAAGGACGAGCAAACCCTAGAAAGCTATGGTGTTGAAACAGATCATACCATTCATATGGTGCGTGGCGCTGGTCCCCCAGCCGGATCAGCTGCACCTGCTGCAGCCAGCCCCCAAGCTTCAGCTGCTCCTAGCAGCGGCCCAACAGATGGTCTTGGAAGTTTGTTTCCTGGCCTTGGTGGTACAGGAACTGCTGGTACCAGGCCATCTGGTCTTTTTGGGTCTGGATTTCCAGAATTGGATCAAATGCAGCAGCAGTTAAGCCAAAACCCCAACTTAATGAGGGAAATAATGAATATGCCAATGATGCAGAATCTCATGAATAACCCTGATTTAATTCGTAACATGATCATGAACAATCCTCAAATGCGTGATATCATCGACCGGAATCCAGATCTTGCTCATGTTCTCAATGATCCAAGTGTTCTCCGCCAGACCCTTGAAGCAGCCAGAAACCCTGAAATCATGAGGGAGATGATGCGGAACACAGACAGAGCAATGAGCAACATTGAGTCTTCTCCTGAAGGGTTTAATATGCTCCGACGCATGTATGAAACTGTCCAGGAGCCTTTCCTAAATGCGACAACAATGGGTGGAGAAGGCAACACAGCTCCAAACCCATTCTCAGCTCTTCTTGGAAATCAGGGTTCTAACCAACCAAGGGATCCTGCTACAAATGCTCCAAATACTGGCTCAGAGTCTACAACAGGAACCCCTGCTCCAAACACTAATCCACTTCCAAATCCTTGGAGCTCCAATGCTGGAGGTGCGCAAGGAGCAACACGGGCAGGTTCTACTGGCAATGCAAGAACCGGTGCCACTGGGGGCCTTGGAGGGTTGGGGTCAGCTGATCTGAGCAGTTTATTTGGTGGTCTTGCCGGTAATACAGGAACTGGTGCTACTGGTGGTCTAGGAGGGTTGGGTTCAGCAGATTTGGGAAGTTTGCTTGGTGGTTCTCCTGATTCTTCTTCCTTGAGCCAGATTTTGCAAAACCCTGTTATGATGCAGATGATGCAGAATATCATGTCTGATCCACAGTCCATGAACCAGTTGCTTAACTTCAACCCAAATACACGCAACCTCATGGAATCAAACACTCAGTTGAGGGAAATGTTCCAAAATCCAGAATTTATTCGCCAGCTTACATCCCCAGAAACTATGCAGCAATTACTCTCGTTCCAGCAGACATTATTATCACAGCTTGGTCAAAATCAACCTAGGCAGGATGGTAGCCAAGGAGGCAATGCGACAGGCATGCGGGGAAATGTTAGCCTCGACACCTTGATGGGCATGCTTAGTGGGCTTGGTGCTGGAGGTGGCATAGGTGTACCCAATACATCCAATGTTCCACCGGAAGAACTGTATGCAACACAGCTCACTCAGCTCCGAGAGATGGGTTTCATCGACACTGCAGAGAACATCCAGGCGCTAGTCGCAACTGCTGGGAATGTGAATGCTGCGGTGGAGCGTCTTCTTGGCAATCTTGGCCAGTAG

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Protein seq

MGGGGGEAGGGDGGESSPAAAAAVAVAGAAALHIRCANGSKFTVRADLDATVGAFKEVVAGSCDVPAAQQRLIYKGRILKDEQTLESYGVETDHTIHMVRGAGPPAGSAAPAAASPQASAAPSSGPTDGLGSLFPGLGGTGTAGTRPSGLFGSGFPELDQMQQQLSQNPNLMREIMNMPMMQNLMNNPDLIRNMIMNNPQMRDIIDRNPDLAHVLNDPSVLRQTLEAARNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATTMGGEGNTAPNPFSALLGNQGSNQPRDPATNAPNTGSESTTGTPAPNTNPLPNPWSSNAGGAQGATRAGSTGNARTGATGGLGGLGSADLSSLFGGLAGNTGTGATGGLGGLGSADLGSLLGGSPDSSSLSQILQNPVMMQMMQNIMSDPQSMNQLLNFNPNTRNLMESNTQLREMFQNPEFIRQLTSPETMQQLLSFQQTLLSQLGQNQPRQDGSQGGNATGMRGNVSLDTLMGMLSGLGAGGGIGVPNTSNVPPEELYATQLTQLREMGFIDTAENIQALVATAGNVNAAVERLLGNLGQ

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Gene Transcript Chromosome Start End Strand Source
OsLima_10g0018390 OsLima_10g0018390.03 Chr10 23394461 23399662 - NAM
CDS seq

ATGGGCGGCGGAGGAGGCGAGGCCGGGGGCGGCGACGGAGGGGAGTCCTCTCCTGCTGCGGCTGCGGCGGTGGCGGTGGCGGGGGCCGCGGCGCTGCACATCCGGTGCGCGAACGGGTCCAAGTTCACCGTGCGGGCCGACCTCGACGCCACGGTGGGGGCGTTCAAGGAGGTGGTGGCGGGGAGCTGCGACGTGCCGGCGGCGCAGCAGCGCCTGATCTACAAGGGCCGGATCCTCAAGGACGAGCAAACCCTAGAAAGCTATGGTGTTGAAACAGATCATACCATTCATATGGTGCGTGGCGCTGGTCCCCCAGCCGGATCAGCTGCACCTGCTGCAGCCAGCCCCCAAGCTTCAGCTGCTCCTAGCAGCGGCCCAACAGATGGTCTTGGAAGTTTGTTTCCTGGCCTTGGTGGTACAGGAACTGCTGGTACCAGGCCATCTGGTCTTTTTGGGTCTGGATTTCCAGAATTGGATCAAATGCAGCAGCAGTTAAGCCAAAACCCCAACTTAATGAGGGAAATAATGAATATGCCAATGATGCAGAATCTCATGAATAACCCTGATTTAATTCGTAACATGATCATGAACAATCCTCAAATGCGTGATATCATCGACCGGAATCCAGATCTTGCTCATGTTCTCAATGATCCAAGTGTTCTCCGCCAGACCCTTGAAGCAGCCAGAAACCCTGAAATCATGAGGGAGATGATGCGGAACACAGACAGAGCAATGAGCAACATTGAGTCTTCTCCTGAAGGGTTTAATATGCTCCGACGCATGTATGAAACTGTCCAGGAGCCTTTCCTAAATGCGACAACAATGGGTGGAGAAGGCAACACAGCTCCAAACCCATTCTCAGCTCTTCTTGGAAATCAGGGTTCTAACCAACCAAGGGATCCTGCTACAAATGCTCCAAATACTGGCTCAGAGTCTACAACAGGAACCCCTGCTCCAAACACTAATCCACTTCCAAATCCTTGGAGCTCCAATGCTGGAGGTGCGCAAGGAGCAACACGGGCAGGTTCTACTGGCAATGCAAGAACCGGTGCCACTGGGGGCCTTGGAGGGTTGGGGTCAGCTGATCTGAGCAGTTTATTTGGTGGTCTTGCCGGTAATACAGGAACTGGTGCTACTGGTGGTCTAGGAGGGTTGGGTTCAGCAGATTTGGGAAGTTTGCTTGGTGGTTCTCCTGATTCTTCTTCCTTGAGCCAGATTTTGCAAAACCCTGTTATGATGCAGATGATGCAGAATATCATGTCTGATCCACAGTCCATGAACCAGTTGCTTAACTTCAACCCAAATACACGCAACCTCATGGAATCAAACACTCAGTTGAGGGAAATGTTCCAAAATCCAGAATTTATTCGCCAGCTTACATCCCCAGAAACTATGCAGGTAACATATGTTACGTTTTATGTATGTGGCTAG

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Protein seq

MGGGGGEAGGGDGGESSPAAAAAVAVAGAAALHIRCANGSKFTVRADLDATVGAFKEVVAGSCDVPAAQQRLIYKGRILKDEQTLESYGVETDHTIHMVRGAGPPAGSAAPAAASPQASAAPSSGPTDGLGSLFPGLGGTGTAGTRPSGLFGSGFPELDQMQQQLSQNPNLMREIMNMPMMQNLMNNPDLIRNMIMNNPQMRDIIDRNPDLAHVLNDPSVLRQTLEAARNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATTMGGEGNTAPNPFSALLGNQGSNQPRDPATNAPNTGSESTTGTPAPNTNPLPNPWSSNAGGAQGATRAGSTGNARTGATGGLGGLGSADLSSLFGGLAGNTGTGATGGLGGLGSADLGSLLGGSPDSSSLSQILQNPVMMQMMQNIMSDPQSMNQLLNFNPNTRNLMESNTQLREMFQNPEFIRQLTSPETMQVTYVTFYVCG

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Gene Transcript Chromosome Start End Strand Source
OsLima_10g0018390 OsLima_10g0018390.04 Chr10 23394461 23399662 - NAM
CDS seq

ATGGGCGGCGGAGGAGGCGAGGCCGGGGGCGGCGACGGAGGGGAGTCCTCTCCTGCTGCGGCTGCGGCGGTGGCGGTGGCGGGGGCCGCGGCGCTGCACATCCGGTGCGCGAACGGGTCCAAGTTCACCGTGCGGGCCGACCTCGACGCCACGGTGGGGGCGTTCAAGGAGGTGGTGGCGGGGAGCTGCGACGTGCCGGCGGCGCAGCAGCGCCTGATCTACAAGGGCCGGATCCTCAAGGACGAGCAAACCCTAGAAAGCTATGGTGTTGAAACAGATCATACCATTCATATGGTGCGTGGCGCTGGTCCCCCAGCCGGATCAGCTGCACCTGCTGCAGCCAGCCCCCAAGCTTCAGCTGCTCCTAGCAGCGGCCCAACAGATGGTCTTGGAAGTTTGTTTCCTGGCCTTGGTGGTACAGGAACTGCTGGTACCAGGCCATCTGGTCTTTTTGGGTCTGGATTTCCAGAATTGGATCAAATGCAGCAGCAGTTAAGCCAAAACCCCAACTTAATGAGGGAAATAATGAATATGCCAATGATGCAGAATCTCATGAATAACCCTGATTTAATTCGTAACATGATCATGAACAATCCTCAAATGCGTGATATCATCGACCGGAATCCAGATCTTGCTCATGTTCTCAATGATCCAAGTGTTCTCCGCCAGACCCTTGAAGCAGCCAGAAACCCTGAAATCATGAGGGAGATGATGCGGAACACAGACAGAGCAATGAGCAACATTGAGTCTTCTCCTGAAGGGTTTAATATGCTCCGACGCATGTATGAAACTGTCCAGGAGCCTTTCCTAAATGCGACAACAATGGGTGGAGAAGGCAACACAGCTCCAAACCCATTCTCAGCTCTTCTTGGAAATCAGGGTTCTAACCAACCAAGGGATCCTGCTACAAATGCTCCAAATACTGGCTCAGAGTCTACAACAGGAACCCCTGCTCCAAACACTAATCCACTTCCAAATCCTTGGAGCTCCAATGCTGGAGGTGCGCAAGGAGCAACACGGGCAGGTTCTACTGGCAATGCAAGAACCGGTGCCACTGGGGGCCTTGGAGGGTTGGGGTCAGCTGATCTGAGCAGTTTATTTGGTGGTCTTGCCGGTAATACAGGAACTGGTGCTACTGGTGGTCTAGGAGGGTTGGGTTCAGCAGATTTGGGAAGTTTGCTTGGTGGTTCTCCTGATTCTTCTTCCTTGAGCCAGATTTTGCAAAACCCTGTTATGATGCAGATGATGCAGAATATCATGTCTGATCCACAGTCCATGAACCAGTTGCTTAACTTCAACCCAAATACACGCAACCTCATGGAATCAAACACTCAGTTGAGGGAAATGTTCCAAAATCCAGAATTTATTCGCCAGCTTACATCCCCAGAAACTATGCAGCAATTACTCTCGTTCCAGCAGACATTATTATCACAGCTTGGTCAAAATCAACCTAGGCAGGATGGTAGCCAAGGAGGCAATGCGACAGGCATGCGGGGAAATGTTAGCCTCGACACCTTGATGGGCATGCTTAGTGGGCTTGGTGCTGGAGGTGGCATAGGTGTACCCAATACATCCAATGTTCCACCGGAAGAACTGTATGCAACACAGCTCACTCAGCTCCGAGAGATGGGTTTCATCGACACTGCAGAGAACATCCAGACGCTGCCCATAACGTCACCAACTCCGCTCTTTTGCAAGAGGTTTTTTAGCCCCTCCAAGTTCAAACGCAGCGTCTGTCTACAGTCTCAGGAGAAAATAAAACAAAGAAATCCCACCCCCACCATTAACTTTTCCATACATGGTCGTCATGCCTTTGTTTTTACCGTGTTGTATTTGACTATTTGGGTTGATGTACATACATATGAAATTATCGGATCTTACCGCATAGAATATGGGTCTACCTTTGCAATTGTCGGCTCCCAATCCTCAAGATGTATGTTGATGCCTTCTTGTGTTTTGGGGTATCTTCATAAATCATAA

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Protein seq

MGGGGGEAGGGDGGESSPAAAAAVAVAGAAALHIRCANGSKFTVRADLDATVGAFKEVVAGSCDVPAAQQRLIYKGRILKDEQTLESYGVETDHTIHMVRGAGPPAGSAAPAAASPQASAAPSSGPTDGLGSLFPGLGGTGTAGTRPSGLFGSGFPELDQMQQQLSQNPNLMREIMNMPMMQNLMNNPDLIRNMIMNNPQMRDIIDRNPDLAHVLNDPSVLRQTLEAARNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATTMGGEGNTAPNPFSALLGNQGSNQPRDPATNAPNTGSESTTGTPAPNTNPLPNPWSSNAGGAQGATRAGSTGNARTGATGGLGGLGSADLSSLFGGLAGNTGTGATGGLGGLGSADLGSLLGGSPDSSSLSQILQNPVMMQMMQNIMSDPQSMNQLLNFNPNTRNLMESNTQLREMFQNPEFIRQLTSPETMQQLLSFQQTLLSQLGQNQPRQDGSQGGNATGMRGNVSLDTLMGMLSGLGAGGGIGVPNTSNVPPEELYATQLTQLREMGFIDTAENIQTLPITSPTPLFCKRFFSPSKFKRSVCLQSQEKIKQRNPTPTINFSIHGRHAFVFTVLYLTIWVDVHTYEIIGSYRIEYGSTFAIVGSQSSRCMLMPSCVLGYLHKS

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Gene Transcript Chromosome Start End Strand Source
OsLima_10g0018390 OsLima_10g0018390.05 Chr10 23394461 23399662 - NAM
CDS seq

ATGGGCGGCGGAGGAGGCGAGGCCGGGGGCGGCGACGGAGGGGAGTCCTCTCCTGCTGCGGCTGCGGCGGTGGCGGTGGCGGGGGCCGCGGCGCTGCACATCCGGTGCGCGAACGGGTCCAAGTTCACCGTGCGGGCCGACCTCGACGCCACGGTGGGGGCGTTCAAGGAGGTGGTGGCGGGGAGCTGCGACGTGCCGGCGGCGCAGCAGCGCCTGATCTACAAGGGCCGGATCCTCAAGGACGAGCAAACCCTAGAAAGCTATGGTGTTGAAACAGATCATACCATTCATATGGTGCGTGGCGCTGGTCCCCCAGCCGGATCAGCTGCACCTGCTGCAGCCAGCCCCCAAGCTTCAGCTGCTCCTAGCAGCGGCCCAACAGATGGTCTTGGAAGTTTGTTTCCTGGCCTTGGTGGTACAGGAACTGCTGGTACCAGGCCATCTGGTCTTTTTGGGTCTGGATTTCCAGAATTGGATCAAATGCAGCAGCAGTTAAGCCAAAACCCCAACTTAATGAGGGAAATAATGAATATGCCAATGATGCAGAATCTCATGAATAACCCTGATTTAATTCGTAACATGATCATGAACAATCCTCAAATGCGTGATATCATCGACCGGAATCCAGATCTTGCTCATGTTCTCAATGATCCAAGTGTTCTCCGCCAGACCCTTGAAGCAGCCAGAAACCCTGAAATCATGAGGGAGATGATGCGGAACACAGACAGAGCAATGAGCAACATTGAGTCTTCTCCTGAAGGGTTTAATATGCTCCGACGCATGTATGAAACTGTCCAGGAGCCTTTCCTAAATGCGACAACAATGGGTGGAGAAGGCAACACAGCTCCAAACCCATTCTCAGCTCTTCTTGGAAATCAGGGTTCTAACCAACCAAGGGATCCTGCTACAAATGCTCCAAATACTGGCTCAGAGTCTACAACAGGAACCCCTGCTCCAAACACTAATCCACTTCCAAATCCTTGGAGCTCCAATGCTGGAGGTGCGCAAGGAGCAACACGGGCAGGTTCTACTGGCAATGCAAGAACCGGTGCCACTGGGGGCCTTGGAGGGTTGGGGTCAGCTGATCTGAGCAGTTTATTTGGTGGTCTTGCCGGTAATACAGGAACTGGTGCTACTGGTGGTCTAGGAGGGTTGGGTTCAGCAGATTTGGGAAGTTTGCTTGGTGGTTCTCCTGATTCTTCTTCCTTGAGCCAGATTTTGCAAAACCCTGTTATGATGCAGATGATGCAGAATATCATGTCTGATCCACAGTCCATGAACCAGTTGCTTAACTTCAACCCAAATACACGCAACCTCATGGAATCAAACACTCAGTTGAGGGAAATGTTCCAAAATCCAGAATTTATTCGCCAGCTTACATCCCCAGAAACTATGCAGGTAACATATGTTACGTTTTATGTATGTGGCTAG

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Protein seq

MGGGGGEAGGGDGGESSPAAAAAVAVAGAAALHIRCANGSKFTVRADLDATVGAFKEVVAGSCDVPAAQQRLIYKGRILKDEQTLESYGVETDHTIHMVRGAGPPAGSAAPAAASPQASAAPSSGPTDGLGSLFPGLGGTGTAGTRPSGLFGSGFPELDQMQQQLSQNPNLMREIMNMPMMQNLMNNPDLIRNMIMNNPQMRDIIDRNPDLAHVLNDPSVLRQTLEAARNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATTMGGEGNTAPNPFSALLGNQGSNQPRDPATNAPNTGSESTTGTPAPNTNPLPNPWSSNAGGAQGATRAGSTGNARTGATGGLGGLGSADLSSLFGGLAGNTGTGATGGLGGLGSADLGSLLGGSPDSSSLSQILQNPVMMQMMQNIMSDPQSMNQLLNFNPNTRNLMESNTQLREMFQNPEFIRQLTSPETMQVTYVTFYVCG

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Gene Transcript Chromosome Start End Strand Source
OsLima_10g0018390 OsLima_10g0018390.01 Chr10 23394461 23399662 - NAM
CDS seq

ATGGGCGGCGGAGGAGGCGAGGCCGGGGGCGGCGACGGAGGGGAGTCCTCTCCTGCTGCGGCTGCGGCGGTGGCGGTGGCGGGGGCCGCGGCGCTGCACATCCGGTGCGCGAACGGGTCCAAGTTCACCGTGCGGGCCGACCTCGACGCCACGGTGGGGGCGTTCAAGGAGGTGGTGGCGGGGAGCTGCGACGTGCCGGCGGCGCAGCAGCGCCTGATCTACAAGGGCCGGATCCTCAAGGACGAGCAAACCCTAGAAAGCTATGGTGTTGAAACAGATCATACCATTCATATGGTGCGTGGCGCTGGTCCCCCAGCCGGATCAGCTGCACCTGCTGCAGCCAGCCCCCAAGCTTCAGCTGCTCCTAGCAGCGGCCCAACAGATGGTCTTGGAAGTTTGTTTCCTGGCCTTGGTGGTACAGGAACTGCTGGTACCAGGCCATCTGGTCTTTTTGGGTCTGGATTTCCAGAATTGGATCAAATGCAGCAGCAGTTAAGCCAAAACCCCAACTTAATGAGGGAAATAATGAATATGCCAATGATGCAGAATCTCATGAATAACCCTGATTTAATTCGTAACATGATCATGAACAATCCTCAAATGCGTGATATCATCGACCGGAATCCAGATCTTGCTCATGTTCTCAATGATCCAAGTGTTCTCCGCCAGACCCTTGAAGCAGCCAGAAACCCTGAAATCATGAGGGAGATGATGCGGAACACAGACAGAGCAATGAGCAACATTGAGTCTTCTCCTGAAGGGTTTAATATGCTCCGACGCATGTATGAAACTGTCCAGGAGCCTTTCCTAAATGCGACAACAATGGGTGGAGAAGGCAACACAGCTCCAAACCCATTCTCAGCTCTTCTTGGAAATCAGGGTTCTAACCAACCAAGGGATCCTGCTACAAATGCTCCAAATACTGGCTCAGAGTCTACAACAGGAACCCCTGCTCCAAACACTAATCCACTTCCAAATCCTTGGAGCTCCAATGCTGGAGGTGCGCAAGGAGCAACACGGGCAGGTTCTACTGGCAATGCAAGAACCGGTGCCACTGGGGGCCTTGGAGGGTTGGGGTCAGCTGATCTGAGCAGTTTATTTGGTGGTCTTGCCGGTAATACAGGAACTGGTGCTACTGGTGGTCTAGGAGGGTTGGGTTCAGCAGATTTGGGAAGTTTGCTTGGTGGTTCTCCTGATTCTTCTTCCTTGAGCCAGATTTTGCAAAACCCTGTTATGATGCAGATGATGCAGAATATCATGTCTGATCCACAGTCCATGAACCAGTTGCTTAACTTCAACCCAAATACACGCAACCTCATGGAATCAAACACTCAGTTGAGGGAAATGTTCCAAAATCCAGAATTTATTCGCCAGCTTACATCCCCAGAAACTATGCAGCAATTACTCTCGTTCCAGCAGACATTATTATCACAGCTTGGTCAAAATCAACCTAGGCAGTGA

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Protein seq

MGGGGGEAGGGDGGESSPAAAAAVAVAGAAALHIRCANGSKFTVRADLDATVGAFKEVVAGSCDVPAAQQRLIYKGRILKDEQTLESYGVETDHTIHMVRGAGPPAGSAAPAAASPQASAAPSSGPTDGLGSLFPGLGGTGTAGTRPSGLFGSGFPELDQMQQQLSQNPNLMREIMNMPMMQNLMNNPDLIRNMIMNNPQMRDIIDRNPDLAHVLNDPSVLRQTLEAARNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATTMGGEGNTAPNPFSALLGNQGSNQPRDPATNAPNTGSESTTGTPAPNTNPLPNPWSSNAGGAQGATRAGSTGNARTGATGGLGGLGSADLSSLFGGLAGNTGTGATGGLGGLGSADLGSLLGGSPDSSSLSQILQNPVMMQMMQNIMSDPQSMNQLLNFNPNTRNLMESNTQLREMFQNPEFIRQLTSPETMQQLLSFQQTLLSQLGQNQPRQ

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
RI Chr10 23394461 23395250 - OsLima_10g0018390.01,OsLima_10g0018390.02,OsLima_10g0018390.03 OsLima_10g0018390.01,OsLima_10g0018390.02,OsLima_10g0018390.04,OsLima_10g0018390.03 All
RI Chr10 23396210 23396401 - OsLima_10g0018390.01 OsLima_10g0018390.01,OsLima_10g0018390.02,OsLima_10g0018390.04 All
RI Chr10 23396210 23396587 - OsLima_10g0018390.03 OsLima_10g0018390.05,OsLima_10g0018390.03 All
RI Chr10 23396210 23396587 - OsLima_10g0018390.03 OsLima_10g0018390.01,OsLima_10g0018390.03 All
RI Chr10 23394461 23395418 - OsLima_10g0018390.05 OsLima_10g0018390.01,OsLima_10g0018390.02,OsLima_10g0018390.05,OsLima_10g0018390.03 All
RI Chr10 23396343 23396587 - OsLima_10g0018390.05 OsLima_10g0018390.02,OsLima_10g0018390.04,OsLima_10g0018390.05 All

Expression

Leaf Root Panicle
FPKM 0.852657 0.759636 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_10g0542200 RBH 7.689755 4.470208 21.655838
Nipponbare | IRGSP 1.0 | MSU LOC_Os10g39620 RBH 4.859303 2.639358 4.948843
Nipponbare | IRGSP 1.0 | RAP-db Os10g0542200 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_10g0018710 RBH 1.784623 50.797359 19.581312
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_10g0019080 RBH 1.423877 13.394195 10.803583
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_10g0018490 RBH 4.497925 53.682964 32.128639
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_10g0019040 RBH 0.564100 1.662909 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_10g0018780 RBH 21.894032 38.263081 64.872375
Minghui 63 | MH63RS3 | HZAU OsMH63_10G0349300 RBH 21.3113925 58.702555 63.5819
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_10g0018640 RBH 0.938909 3.541577 5.669812
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_10G0374600 RBH 27.7844075 55.9359705 39.6643315
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_03g0002540 RBH 0.170154 0.177045 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_10g0018330 RBH 3.728453 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_10g0018850 RBH 17.110117 55.190075 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_10g0018440 RBH 2.478631 0.0 5.511220
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_10g0018950 RBH 1.442191 26.823128 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_10G018720 RBH 2.513573 22.278406 12.351580
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_10g0018790 RBH 5.883587 62.497589 25.054888
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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