Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_10g0019080 | OGI:10064490 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr10:23878539-23883683 | ||||||||
| Gene Symbol | DSK2B, OsDSK2b, RIF2 | ||||||||||
| DNA seq | acctggacaaacatctctttagatgaaatgaactgaactgcaattctgcaaatatcatacacaaacgttcagagtaattcatgaacatttccacgtcaaatctgactgctccattatcgagcacagcctctgaactttaaccagaaaagaaaaaaaaatggtgcagtaacctatcatgtatttgccaatagaatcccgagagcagtgcaaatgtcaaatggatagagcaaccaacagagaagacacagcactagcatggcagctgccttgtctagaacaaggccagctaccttaattaccttatgcctagaagaacaaggctgcgttatgatttatgaagataccccaaaacacaagaaggcatcaacatacatcttgaggattgggagccgacaattgcaaaggtagacccatattctatgcggtaagatccgataatttcatatgtatgtacatcaacccaaatagtcaaatacaacacggtaaaaacaaaggcatgacgaccatgtatggagaagttaatggtgggggtgggatttctttgttttattttctcctgagactgtagacagacgctgcgtttgaacttggaggggctaaaaaacctcttgcaaaagagcggagttggtgacgttatgggcagcgtctggtacgctttagctactggccaagattgccaagaagacgctccaccgcagcattcacattcccagcagttgcgactagcgcctggatgttctctgcagtgtcgatgaaacccatctctcggagctgagtgagctgtgttgcatacagttcttccggtggaactgaatcacaagtgtaaaaccataattagtgatgataCaaaaacatggaagatgataagagttactatacaaaccattggatgtattgggtacacctatgccacctccagcaccaagcccactaagcatgcccatcaaggtgtcgaggctaacatttccccgcatgcctgcattttatttcattggcatttgccacattacttaacaaaaaggtgaaaaaaaatgcatttgtaagaatttaattatcaaatgctcagtactcgaattaccactacacatctaacattgctccacaatttagaaggcagtacagttgactacacaaacaactcgtataatctcttccataccaatatagcacagtcaagcagctaaagagctcagacacgttcaacacataacagattacttaaatggaactatggttgtgactaaaggtgtagggagctctcatccattctccaataatcaaatccacaagcagcattcagtcataggcaacccatttccatttctaagtaaggaaaaaaaatcatacatgtgtcacgcatcaccccaaagaccttgttttgcgatccccaaaacgaggcctggtcgcacggtcgcaccatatcgatcattgatatttctttttttccaatatttcaaggaaactcaaatttagaaattccaatgttatgcaccacaataaggtagtgtcaagaatcaaccactagtaataatcatcataatgtgtttatataatgtaatggccttatggaagaacggaaatcttgaagaactaatacaggtcaaccaagcagtgaaagaaaggcaactattggtgctagaacgaaccaccactaaaagataactcagtacgcactaaaacttatgtaaaacctgacatactaatccatcttaaaacaagaaaagatattagatggtgcATattaaaaaaacaatcaagagaaaatacctgtcgcattgcctccttggctaccatccctgaatcaagaaaatcaaaagataattaacaaacacataatgaaagaaatacagtataaatgagctagatgcaattcaggtactgttgaacaagagttactcactgcctaggttgattttgaccaagctgtgataataatgtctgctggaacgagagtaattgctgccaaaaaagggaaagttaatctagatagagatggagctagccacatacataaaacgtaacatatgttacctgcatagtttctggggatgtaagctggcgaataaattctggattttggaacatttccctcaactgagtgtttgattccatgaggttgcgtgtatttgggttgaagttaagcaactgtggacattttaaattacagaatgatctgaagttatgactctaacatcatcaaagttatataacaaaataagttaagaaataccgtacctggttcatggactgtggatcagacatgatattctgcatcatctgcatcataacagggttttgcaaaatctggctcaaggaagaagaatcaggagaaccaccaagcaaacttcccaaatctgctgaacccaaccctcctagaccaccagtagcaccagttcctgtattaccggcaagaccaccaaataaactgctcagatcagctgaccccaaccctccaaggcccccagtggcaccggttcttgcattgccagtagaacctgcccgtgttgctccttgcgcacctccagctgtcaatttaagtgtgaaaaaacaatagatatatagattatcAaaaacagaataaacaagaggattgagaacataccattggagctccaaggatttggaagtggattagtgtttggagcaggggttcctgttgtagactctgagccagtatttggagcatttgtagcaggatcccttggttggttagaaccctgatttccaagaagagctgagaatgggtttggagctgtgttgccttctccacccattgttgtcgcatttaggaaaggctcctggacagtttcatacatgcgtcggagcatattaaacccttcaggagaagactcaatgttgctcattgctctgtctgtgttccgcatcatctccctcatgatttcagggtttctggctgcttcaagggtctggcggagaacacttggatcattgagaacatgagcaagatctggattccggtcgatgatatcacgcatttgaggattgttcatgatcatgttacgaattaaatcagggttattcatgagattctgcatcattggcatattcattatttccctcattaagttggggttttggcttaactgctgctgcatttgatccaattctggaaatccagacccaaaaagaccagatggcctggtaccagcagttcctgtaccaccaaggccaggaaacaaacttccaagaccatctgttgggccgctgctaggagcagctgaagcttgggggctggctgcagcaggtgcagctgatccggctgggggaccagcgccacgcaccatatgaatggtatgatctgtttcaacacctacaaaatataaggagtgtgagaagcaagaaaagaattatgcttgataagtcagaaatttgaacagcgggccagcatatctacataaacaaagaatattccaatatctgatgtaatcatatacaagagaattacaaatgaaaacttctaaagaattcacatgtgagagactaaagaagatagtgcatcggatgactatgccataaatcctcatttatggcatgttaacatacttagcgtgcccaatatttcgtattacatgagaattacttggtactctctcataaaaggtaacaattttcccagaagatgttttTCttttttgttaaggcatcattgattcaacgcatttatttagcagcattccaccatgtaaggatgttcagaacatgtcttttgaaagttgttcccttcTtttcctcaaatacacatgcacgattggccaattaactaacgttttcctcatatggaagtttttgcatagcaagaagctacaatcataatcaatgtaataattagttagcatcattacccgctgaaaataaatatgaaaccatgagctgacataaatacgagttccaaacatatatacacttcctgcgaatcagcaaacgtactaatttattgtaacagtagcactagagaaacagattcacgttttccTtttttttcaaaagacagcccactgcttagttccattaaacagaacaattgtttggtttactgttctcggtcactactttgtaatcaacggaaagaaaaggatgattttacatttggtgaacccatttccatagcagggttgtgcacttaaccaaatagtgtttaagaaaaattgttcagttgcattgcaaacaacaaattgaagtatttacttgtatttgcacttcataaactacattcaataataaagtgcactctacccaaagttcacagataaaaataaagcccatatgatgcttcatgagaaaataaattaactttcactacaactccaagaagattctaagatgtcacacattgcgacataataacaacgtatgcgtaactaatacgagcagtagcttacatggccccataagtccataacatttggaactatattcgagtcgcgacaagatgagctgccttcagcttcttcatcatcttatacgctacgtaagagtaaccgttccgttcgcagtatacattatcattaatacactacacactctatactcgcatcacccaatcaccaataactgtgtagagaagcaaagcatatcgacgaatctgtttcgctagcatgcatagggcaccgaagcggattgctgcaccttgtcccccatgaacaggagccccaggtataaacaggcattgcatcgacaaagctaaatcgcggcttcttacaactacacgactgaaatcgagcacgtagcatgtcaattccaacccatcggaccaaaaatcctgacgatttgatgggttttttttctcctcctctacctaacagtcctagacactcaccatagctttctagggtttgctcgtccttgaggatccggcccttgtagatcaggcgctgctgcgccgccggcacgtcgcagctccccgccaccacctccttgaacgcccccaccgtggcgtcgaggtcggcccgcacggtgaacttggacccgttcgcgcaccggatgtgcagcgccgcggcccccgccaccgccgccgccgcagccgcagcaggagaggactcccctccgtcgccgCccccggcctcgcctcctccgccgcccatgccgtcgacctcggcccgatccgctcggagtcggcggcctcgc
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| CDS seq | atgggcggcggaggaggcgaggccggggGcggcgacggaggggagtcctctcctgctgcggctgcggcggcggcggtggcgggggccgcggcgctgcacatccggtgcgcgaacgggtccaagttcaccgtgcgggccgacctcgacgccacggtgggggcgttcaaggaggtggtggcggggagctgcgacgtgccggcggcgcagcagcgcctgatctacaagggccggatcctcaaggacgagcaaaccctagaaagctatggtgttgaaacagatcataccattcatatggtgcgtggcgctggtcccccagccggatcagctgcacctgctgcagccagcccccaagcttcagctgctcctagcagcggcccaacagatggtcttggaagtttgtttcctggccttggtggtacaggaactgctggtaccaggccatctggtctttttgggtctggatttccagaattggatcaaatgcagcagcagttaagccaaaaccccaacttaatgagggaaataatgaatatgccaatgatgcagaatctcatgaataaccctgatttaattcgtaacatgatcatgaacaatcctcaaatgcgtgatatcatcgaccggaatccagatcttgctcatgttctcaatgatccaagtgttctccgccagacccttgaagcagccagaaaccctgaaatcatgagggagatgatgcggaacacagacagagcaatgagcaacattgagtcttctcctgaagggtttaatatgctccgacgcatgtatgaaactgtccaggagcctttcctaaatgcgacaacaatgggtggagaaggcaacacagctccaaacccattctcagctcttcttggaaatcagggttctaaccaaccaagggatcctgctacaaatgctccaaatactggctcagagtctacaacaggaacccctgctccaaacactaatccacttccaaatccttggagctccaatgctggaggtgcgcaaggagcaacacgggcaggttctactggcaatgcaagaaccggtgccactgggggccttggagggttggggtcagctgatctgagcagtttatttggtggtcttgccggtaatacaggaactggtgctactggtggtctaggagggttgggttcagcagatttgggaagtttgcttggtggttctcctgattcttcttccttgagccagattttgcaaaaccctgttatgatgcagatgatgcagaatatcatgtctgatccacagtccatgaaccagttgcttaacttcaacccaaatacacgcaacctcatggaatcaaacactcagttgagggaaatgttccaaaatccagaatttattcgccagcttacatccccagaaactatgcagcaattactctcgttccagcagacattattatcacagcttggtcaaaatcaacctaggcaggatggtagccaaggaggcaatgcgacaggcatgcggggaaatgttagcctcgacaccttgatgggcatgcttagtgggcttggtgctggaggtggcataggtgtacccaatacatccaatgttccaccggaagaactgtatgcaacacagctcactcagctccgagagatgggtttcatcgacactgcagagaacatccagacgctgcccataacgtcaccaactccgctcttttgcaagaggttttttagcccctccaagttcaaacgcagcgtctgtctacagtctcaggagaaaataaaacaaagaaatcccacccccaccattaacttctccatacatggtcgtcatgcctttgtttttaccgtgttgtatttgactatttgggttgatgtacatacatatgaaattatcggatcttaccgcatagaatatgggtctacctttgcaattgtcggctcccaatcctcaagatgtatgttgatgccttcttgtgttttggggtatcttcataaatcataa
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| Protein seq | MGGGGGEAGGGDGGESSPAAAAAAAVAGAAALHIRCANGSKFTVRADLDATVGAFKEVVAGSCDVPAAQQRLIYKGRILKDEQTLESYGVETDHTIHMVRGAGPPAGSAAPAAASPQASAAPSSGPTDGLGSLFPGLGGTGTAGTRPSGLFGSGFPELDQMQQQLSQNPNLMREIMNMPMMQNLMNNPDLIRNMIMNNPQMRDIIDRNPDLAHVLNDPSVLRQTLEAARNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATTMGGEGNTAPNPFSALLGNQGSNQPRDPATNAPNTGSESTTGTPAPNTNPLPNPWSSNAGGAQGATRAGSTGNARTGATGGLGGLGSADLSSLFGGLAGNTGTGATGGLGGLGSADLGSLLGGSPDSSSLSQILQNPVMMQMMQNIMSDPQSMNQLLNFNPNTRNLMESNTQLREMFQNPEFIRQLTSPETMQQLLSFQQTLLSQLGQNQPRQDGSQGGNATGMRGNVSLDTLMGMLSGLGAGGGIGVPNTSNVPPEELYATQLTQLREMGFIDTAENIQTLPITSPTPLFCKRFFSPSKFKRSVCLQSQEKIKQRNPTPTINFSIHGRHAFVFTVLYLTIWVDVHTYEIIGSYRIEYGSTFAIVGSQSSRCMLMPSCVLGYLHKS |
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| Function | Ubiquitin domain-containing protein DSK2b [UniProtKB/Swiss-Prot:Q9SII8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_10g0019080 | OsKeNa_10g0019080.02 | Chr10 | 23878539 | 23883683 | - | NAM | ||
| CDS seq | atgggcggcggaggaggcgaggccggggGcggcgacggaggggagtcctctcctgctgcggctgcggcggcggcggtggcgggggccgcggcgctgcacatccggtgcgcgaacgggtccaagttcaccgtgcgggccgacctcgacgccacggtgggggcgttcaaggaggtggtggcggggagctgcgacgtgccggcggcgcagcagcgcctgatctacaagggccggatcctcaaggacgagcaaaccctagaaagctatggtgttgaaacagatcataccattcatatggtgcgtggcgctggtcccccagccggatcagctgcacctgctgcagccagcccccaagcttcagctgctcctagcagcggcccaacagatggtcttggaagtttgtttcctggccttggtggtacaggaactgctggtaccaggccatctggtctttttgggtctggatttccagaattggatcaaatgcagcagcagttaagccaaaaccccaacttaatgagggaaataatgaatatgccaatgatgcagaatctcatgaataaccctgatttaattcgtaacatgatcatgaacaatcctcaaatgcgtgatatcatcgaccggaatccagatcttgctcatgttctcaatgatccaagtgttctccgccagacccttgaagcagccagaaaccctgaaatcatgagggagatgatgcggaacacagacagagcaatgagcaacattgagtcttctcctgaagggtttaatatgctccgacgcatgtatgaaactgtccaggagcctttcctaaatgcgacaacaatgggtggagaaggcaacacagctccaaacccattctcagctcttcttggaaatcagggttctaaccaaccaagggatcctgctacaaatgctccaaatactggctcagagtctacaacaggaacccctgctccaaacactaatccacttccaaatccttggagctccaatgctggaggtgcgcaaggagcaacacgggcaggttctactggcaatgcaagaaccggtgccactgggggccttggagggttggggtcagctgatctgagcagtttatttggtggtcttgccggtaatacaggaactggtgctactggtggtctaggagggttgggttcagcagatttgggaagtttgcttggtggttctcctgattcttcttccttgagccagattttgcaaaaccctgttatgatgcagatgatgcagaatatcatgtctgatccacagtccatgaaccagttgcttaacttcaacccaaatacacgcaacctcatggaatcaaacactcagttgagggaaatgttccaaaatccagaatttattcgccagcttacatccccagaaactatgcagcaattactctcgttccagcagacattattatcacagcttggtcaaaatcaacctaggcaggatggtagccaaggaggcaatgcgacaggcatgcggggaaatgttagcctcgacaccttgatgggcatgcttagtgggcttggtgctggaggtggcataggtgtacccaatacatccaatgttccaccggaagaactgtatgcaacacagctcactcagctccgagagatgggtttcatcgacactgcagagaacatccagacgctgcccataacgtcaccaactccgctcttttgcaagaggttttttagcccctccaagttcaaacgcagcgtctgtctacagtctcaggagaaaataaaacaaagaaatcccacccccaccattaacttctccatacatggtcgtcatgcctttgtttttaccgtgttgtatttgactatttgggttgatgtacatacatatgaaattatcggatcttaccgcatagaatatgggtctacctttgcaattgtcggctcccaatcctcaagatgtatgttgatgccttcttgtgttttggggtatcttcataaatcataa
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| Protein seq | MGGGGGEAGGGDGGESSPAAAAAAAVAGAAALHIRCANGSKFTVRADLDATVGAFKEVVAGSCDVPAAQQRLIYKGRILKDEQTLESYGVETDHTIHMVRGAGPPAGSAAPAAASPQASAAPSSGPTDGLGSLFPGLGGTGTAGTRPSGLFGSGFPELDQMQQQLSQNPNLMREIMNMPMMQNLMNNPDLIRNMIMNNPQMRDIIDRNPDLAHVLNDPSVLRQTLEAARNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATTMGGEGNTAPNPFSALLGNQGSNQPRDPATNAPNTGSESTTGTPAPNTNPLPNPWSSNAGGAQGATRAGSTGNARTGATGGLGGLGSADLSSLFGGLAGNTGTGATGGLGGLGSADLGSLLGGSPDSSSLSQILQNPVMMQMMQNIMSDPQSMNQLLNFNPNTRNLMESNTQLREMFQNPEFIRQLTSPETMQQLLSFQQTLLSQLGQNQPRQDGSQGGNATGMRGNVSLDTLMGMLSGLGAGGGIGVPNTSNVPPEELYATQLTQLREMGFIDTAENIQTLPITSPTPLFCKRFFSPSKFKRSVCLQSQEKIKQRNPTPTINFSIHGRHAFVFTVLYLTIWVDVHTYEIIGSYRIEYGSTFAIVGSQSSRCMLMPSCVLGYLHKS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_10g0019080 | OsKeNa_10g0019080.04 | Chr10 | 23878539 | 23883683 | - | NAM | ||
| CDS seq | atgggcggcggaggaggcgaggccggggGcggcgacggaggggagtcctctcctgctgcggctgcggcggcggcggtggcgggggccgcggcgctgcacatccggtgcgcgaacgggtccaagttcaccgtgcgggccgacctcgacgccacggtgggggcgttcaaggaggtggtggcggggagctgcgacgtgccggcggcgcagcagcgcctgatctacaagggccggatcctcaaggacgagcaaaccctagaaagctatggtgttgaaacagatcataccattcatatggtgcgtggcgctggtcccccagccggatcagctgcacctgctgcagccagcccccaagcttcagctgctcctagcagcggcccaacagatggtcttggaagtttgtttcctggccttggtggtacaggaactgctggtaccaggccatctggtctttttgggtctggatttccagaattggatcaaatgcagcagcagttaagccaaaaccccaacttaatgagggaaataatgaatatgccaatgatgcagaatctcatgaataaccctgatttaattcgtaacatgatcatgaacaatcctcaaatgcgtgatatcatcgaccggaatccagatcttgctcatgttctcaatgatccaagtgttctccgccagacccttgaagcagccagaaaccctgaaatcatgagggagatgatgcggaacacagacagagcaatgagcaacattgagtcttctcctgaagggtttaatatgctccgacgcatgtatgaaactgtccaggagcctttcctaaatgcgacaacaatgggtggagaaggcaacacagctccaaacccattctcagctcttcttggaaatcagggttctaaccaaccaagggatcctgctacaaatgctccaaatactggctcagagtctacaacaggaacccctgctccaaacactaatccacttccaaatccttggagctccaatgctggaggtgcgcaaggagcaacacgggcaggttctactggcaatgcaagaaccggtgccactgggggccttggagggttggggtcagctgatctgagcagtttatttggtggtcttgccggtaatacaggaactggtgctactggtggtctaggagggttgggttcagcagatttgggaagtttgcttggtggttctcctgattcttcttccttgagccagattttgcaaaaccctgttatgatgcagatgatgcagaatatcatgtctgatccacagtccatgaaccagttgcttaacttcaacccaaatacacgcaacctcatggaatcaaacactcagttgagggaaatgttccaaaatccagaatttattcgccagcttacatccccagaaactatgcagcaattactctcgttccagcagacattattatcacagcttggtcaaaatcaacctaggcagtga
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| Protein seq | MGGGGGEAGGGDGGESSPAAAAAAAVAGAAALHIRCANGSKFTVRADLDATVGAFKEVVAGSCDVPAAQQRLIYKGRILKDEQTLESYGVETDHTIHMVRGAGPPAGSAAPAAASPQASAAPSSGPTDGLGSLFPGLGGTGTAGTRPSGLFGSGFPELDQMQQQLSQNPNLMREIMNMPMMQNLMNNPDLIRNMIMNNPQMRDIIDRNPDLAHVLNDPSVLRQTLEAARNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATTMGGEGNTAPNPFSALLGNQGSNQPRDPATNAPNTGSESTTGTPAPNTNPLPNPWSSNAGGAQGATRAGSTGNARTGATGGLGGLGSADLSSLFGGLAGNTGTGATGGLGGLGSADLGSLLGGSPDSSSLSQILQNPVMMQMMQNIMSDPQSMNQLLNFNPNTRNLMESNTQLREMFQNPEFIRQLTSPETMQQLLSFQQTLLSQLGQNQPRQ
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_10g0019080 | OsKeNa_10g0019080.05 | Chr10 | 23878539 | 23883683 | - | NAM | ||
| CDS seq | atgggcggcggaggaggcgaggccggggGcggcgacggaggggagtcctctcctgctgcggctgcggcggcggcggtggcgggggccgcggcgctgcacatccggtgcgcgaacgggtccaagttcaccgtgcgggccgacctcgacgccacggtgggggcgttcaaggaggtggtggcggggagctgcgacgtgccggcggcgcagcagcgcctgatctacaagggccggatcctcaaggacgagcaaaccctagaaagctatggtgttgaaacagatcataccattcatatggtgcgtggcgctggtcccccagccggatcagctgcacctgctgcagccagcccccaagcttcagctgctcctagcagcggcccaacagatggtcttggaagtttgtttcctggccttggtggtacaggaactgctggtaccaggccatctggtctttttgggtctggatttccagaattggatcaaatgcagcagcagttaagccaaaaccccaacttaatgagggaaataatgaatatgccaatgatgcagaatctcatgaataaccctgatttaattcgtaacatgatcatgaacaatcctcaaatgcgtgatatcatcgaccggaatccagatcttgctcatgttctcaatgatccaagtgttctccgccagacccttgaagcagccagaaaccctgaaatcatgagggagatgatgcggaacacagacagagcaatgagcaacattgagtcttctcctgaagggtttaatatgctccgacgcatgtatgaaactgtccaggagcctttcctaaatgcgacaacaatgggtggagaaggcaacacagctccaaacccattctcagctcttcttggaaatcagggttctaaccaaccaagggatcctgctacaaatgctccaaatactggctcagagtctacaacaggaacccctgctccaaacactaatccacttccaaatccttggagctccaatgctggaggtgcgcaaggagcaacacgggcaggttctactggcaatgcaagaaccggtgccactgggggccttggagggttggggtcagctgatctgagcagtttatttggtggtcttgccggtaatacaggaactggtgctactggtggtctaggagggttgggttcagcagatttgggaagtttgcttggtggttctcctgattcttcttccttgagccagattttgcaaaaccctgttatgatgcagatgatgcagaatatcatgtctgatccacagtccatgaaccagttgcttaacttcaacccaaatacacgcaacctcatggaatcaaacactcagttgagggaaatgttccaaaatccagaatttattcgccagcttacatccccagaaactatgcagcaattactctcgttccagcagacattattatcacagcttggtcaaaatcaacctaggcaggatggtagccaaggaggcaatgcgacaggcatgcggggaaatgttagcctcgacaccttgatgggcatgcttagtgggcttggtgctggaggtggcataggtgtacccaatacatccaatgttccaccggaagaactgtatgcaacacagctcactcagctccgagagatgggtttcatcgacactgcagagaacatccaggcgctagtcgcaactgctgggaatgtgaatgctgcggtggagcgtcttcttggcaatcttggccagtag
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| Protein seq | MGGGGGEAGGGDGGESSPAAAAAAAVAGAAALHIRCANGSKFTVRADLDATVGAFKEVVAGSCDVPAAQQRLIYKGRILKDEQTLESYGVETDHTIHMVRGAGPPAGSAAPAAASPQASAAPSSGPTDGLGSLFPGLGGTGTAGTRPSGLFGSGFPELDQMQQQLSQNPNLMREIMNMPMMQNLMNNPDLIRNMIMNNPQMRDIIDRNPDLAHVLNDPSVLRQTLEAARNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATTMGGEGNTAPNPFSALLGNQGSNQPRDPATNAPNTGSESTTGTPAPNTNPLPNPWSSNAGGAQGATRAGSTGNARTGATGGLGGLGSADLSSLFGGLAGNTGTGATGGLGGLGSADLGSLLGGSPDSSSLSQILQNPVMMQMMQNIMSDPQSMNQLLNFNPNTRNLMESNTQLREMFQNPEFIRQLTSPETMQQLLSFQQTLLSQLGQNQPRQDGSQGGNATGMRGNVSLDTLMGMLSGLGAGGGIGVPNTSNVPPEELYATQLTQLREMGFIDTAENIQALVATAGNVNAAVERLLGNLGQ
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_10g0019080 | OsKeNa_10g0019080.03 | Chr10 | 23878539 | 23883683 | - | NAM | ||
| CDS seq | atgggcggcggaggaggcgaggccggggGcggcgacggaggggagtcctctcctgctgcggctgcggcggcggcggtggcgggggccgcggcgctgcacatccggtgcgcgaacgggtccaagttcaccgtgcgggccgacctcgacgccacggtgggggcgttcaaggaggtggtggcggggagctgcgacgtgccggcggcgcagcagcgcctgatctacaagggccggatcctcaaggacgagcaaaccctagaaagctatggtgttgaaacagatcataccattcatatggtgcgtggcgctggtcccccagccggatcagctgcacctgctgcagccagcccccaagcttcagctgctcctagcagcggcccaacagatggtcttggaagtttgtttcctggccttggtggtacaggaactgctggtaccaggccatctggtctttttgggtctggatttccagaattggatcaaatgcagcagcagttaagccaaaaccccaacttaatgagggaaataatgaatatgccaatgatgcagaatctcatgaataaccctgatttaattcgtaacatgatcatgaacaatcctcaaatgcgtgatatcatcgaccggaatccagatcttgctcatgttctcaatgatccaagtgttctccgccagacccttgaagcagccagaaaccctgaaatcatgagggagatgatgcggaacacagacagagcaatgagcaacattgagtcttctcctgaagggtttaatatgctccgacgcatgtatgaaactgtccaggagcctttcctaaatgcgacaacaatgggtggagaaggcaacacagctccaaacccattctcagctcttcttggaaatcagggttctaaccaaccaagggatcctgctacaaatgctccaaatactggctcagagtctacaacaggaacccctgctccaaacactaatccacttccaaatccttggagctccaatgctggaggtgcgcaaggagcaacacgggcaggttctactggcaatgcaagaaccggtgccactgggggccttggagggttggggtcagctgatctgagcagtttatttggtggtcttgccggtaatacaggaactggtgctactggtggtctaggagggttgggttcagcagatttgggaagtttgcttggtggttctcctgattcttcttccttgagccagattttgcaaaaccctgttatgatgcagatgatgcagaatatcatgtctgatccacagtccatgaaccagttgcttaacttcaacccaaatacacgcaacctcatggaatcaaacactcagttgagggaaatgttccaaaatccagaatttattcgccagcttacatccccagaaactatgcaggtaacatatgttacgttttatgtatgtggctag
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| Protein seq | MGGGGGEAGGGDGGESSPAAAAAAAVAGAAALHIRCANGSKFTVRADLDATVGAFKEVVAGSCDVPAAQQRLIYKGRILKDEQTLESYGVETDHTIHMVRGAGPPAGSAAPAAASPQASAAPSSGPTDGLGSLFPGLGGTGTAGTRPSGLFGSGFPELDQMQQQLSQNPNLMREIMNMPMMQNLMNNPDLIRNMIMNNPQMRDIIDRNPDLAHVLNDPSVLRQTLEAARNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATTMGGEGNTAPNPFSALLGNQGSNQPRDPATNAPNTGSESTTGTPAPNTNPLPNPWSSNAGGAQGATRAGSTGNARTGATGGLGGLGSADLSSLFGGLAGNTGTGATGGLGGLGSADLGSLLGGSPDSSSLSQILQNPVMMQMMQNIMSDPQSMNQLLNFNPNTRNLMESNTQLREMFQNPEFIRQLTSPETMQVTYVTFYVCG
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_10g0019080 | OsKeNa_10g0019080.01 | Chr10 | 23878539 | 23883683 | - | NAM | ||
| CDS seq | atgggcggcggaggaggcgaggccggggGcggcgacggaggggagtcctctcctgctgcggctgcggcggcggcggtggcgggggccgcggcgctgcacatccggtgcgcgaacgggtccaagttcaccgtgcgggccgacctcgacgccacggtgggggcgttcaaggaggtggtggcggggagctgcgacgtgccggcggcgcagcagcgcctgatctacaagggccggatcctcaaggacgagcaaaccctagaaagctatggtgttgaaacagatcataccattcatatggtgcgtggcgctggtcccccagccggatcagctgcacctgctgcagccagcccccaagcttcagctgctcctagcagcggcccaacagatggtcttggaagtttgtttcctggccttggtggtacaggaactgctggtaccaggccatctggtctttttgggtctggatttccagaattggatcaaatgcagcagcagttaagccaaaaccccaacttaatgagggaaataatgaatatgccaatgatgcagaatctcatgaataaccctgatttaattcgtaacatgatcatgaacaatcctcaaatgcgtgatatcatcgaccggaatccagatcttgctcatgttctcaatgatccaagtgttctccgccagacccttgaagcagccagaaaccctgaaatcatgagggagatgatgcggaacacagacagagcaatgagcaacattgagtcttctcctgaagggtttaatatgctccgacgcatgtatgaaactgtccaggagcctttcctaaatgcgacaacaatgggtggagaaggcaacacagctccaaacccattctcagctcttcttggaaatcagggttctaaccaaccaagggatcctgctacaaatgctccaaatactggctcagagtctacaacaggaacccctgctccaaacactaatccacttccaaatccttggagctccaatgctggaggtgcgcaaggagcaacacgggcaggttctactggcaatgcaagaaccggtgccactgggggccttggagggttggggtcagctgatctgagcagtttatttggtggtcttgccggtaatacaggaactggtgctactggtggtctaggagggttgggttcagcagatttgggaagtttgcttggtggttctcctgattcttcttccttgagccagattttgcaaaaccctgttatgatgcagatgatgcagaatatcatgtctgatccacagtccatgaaccagttgcttaacttcaacccaaatacacgcaacctcatggaatcaaacactcagttgagggaaatgttccaaaatccagaatttattcgccagcttacatccccagaaactatgcaggtaacatatgttacgttttatgtatgtggctag
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| Protein seq | MGGGGGEAGGGDGGESSPAAAAAAAVAGAAALHIRCANGSKFTVRADLDATVGAFKEVVAGSCDVPAAQQRLIYKGRILKDEQTLESYGVETDHTIHMVRGAGPPAGSAAPAAASPQASAAPSSGPTDGLGSLFPGLGGTGTAGTRPSGLFGSGFPELDQMQQQLSQNPNLMREIMNMPMMQNLMNNPDLIRNMIMNNPQMRDIIDRNPDLAHVLNDPSVLRQTLEAARNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATTMGGEGNTAPNPFSALLGNQGSNQPRDPATNAPNTGSESTTGTPAPNTNPLPNPWSSNAGGAQGATRAGSTGNARTGATGGLGGLGSADLSSLFGGLAGNTGTGATGGLGGLGSADLGSLLGGSPDSSSLSQILQNPVMMQMMQNIMSDPQSMNQLLNFNPNTRNLMESNTQLREMFQNPEFIRQLTSPETMQVTYVTFYVCG
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_10g0019080 | OsKeNa_10g0019080.06 | Chr10 | 23879826 | 23883683 | - | NAM | ||
| CDS seq | atgggcggcggaggaggcgaggccggggGcggcgacggaggggagtcctctcctgctgcggctgcggcggcggcggtggcgggggccgcggcgctgcacatccggtgcgcgaacgggtccaagttcaccgtgcgggccgacctcgacgccacggtgggggcgttcaaggaggtggtggcggggagctgcgacgtgccggcggcgcagcagcgcctgatctacaagggccggatcctcaaggacgagcaaaccctagaaagctatggtgttgaaacagatcataccattcatatggtgcgtggcgctggtcccccagccggatcagctgcacctgctgcagccagcccccaagcttcagctgctcctagcagcggcccaacagatggtcttggaagtttgtttcctggccttggtggtacaggaactgctggtaccaggccatctggtctttttgggtctggatttccagaattggatcaaatgcagcagcagttaagccaaaaccccaacttaatgagggaaataatgaatatgccaatgatgcagaatctcatgaataaccctgatttaattcgtaacatgatcatgaacaatcctcaaatgcgtgatatcatcgaccggaatccagatcttgctcatgttctcaatgatccaagtgttctccgccagacccttgaagcagccagaaaccctgaaatcatgagggagatgatgcggaacacagacagagcaatgagcaacattgagtcttctcctgaagggtttaatatgctccgacgcatgtatgaaactgtccaggagcctttcctaaatgcgacaacaatgggtggagaaggcaacacagctccaaacccattctcagctcttcttggaaatcagggttctaaccaaccaagggatcctgctacaaatgctccaaatactggctcagagtctacaacaggaacccctgctccaaacactaatccacttccaaatccttggagctccaatgctggaggtgcgcaaggagcaacacgggcaggttctactggcaatgcaagaaccggtgccactgggggccttggagggttggggtcagctgatctgagcagtttatttggtggtcttgccggtaatacaggaactggtgctactggtggtctaggagggttgggttcagcagatttgggaagtttgcttggtggttctcctgattcttcttccttgagccagattttgcaaaaccctgttatgatgcagatgatgcagaatatcatgtctgatccacagtccatgaaccagttgcttaacttcaacccaaatacacgcaacctcatggaatcaaacactcagttgagggaaatgttccaaaatccagaatttattcgccagcttacatccccagaaactatgcaggtaacatatgttacgttttatgtatgtggctag
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| Protein seq | MGGGGGEAGGGDGGESSPAAAAAAAVAGAAALHIRCANGSKFTVRADLDATVGAFKEVVAGSCDVPAAQQRLIYKGRILKDEQTLESYGVETDHTIHMVRGAGPPAGSAAPAAASPQASAAPSSGPTDGLGSLFPGLGGTGTAGTRPSGLFGSGFPELDQMQQQLSQNPNLMREIMNMPMMQNLMNNPDLIRNMIMNNPQMRDIIDRNPDLAHVLNDPSVLRQTLEAARNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATTMGGEGNTAPNPFSALLGNQGSNQPRDPATNAPNTGSESTTGTPAPNTNPLPNPWSSNAGGAQGATRAGSTGNARTGATGGLGGLGSADLSSLFGGLAGNTGTGATGGLGGLGSADLGSLLGGSPDSSSLSQILQNPVMMQMMQNIMSDPQSMNQLLNFNPNTRNLMESNTQLREMFQNPEFIRQLTSPETMQVTYVTFYVCG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr10 | 23878539 | 23879347 | - | OsKeNa_10g0019080.01,OsKeNa_10g0019080.04,OsKeNa_10g0019080.05 | OsKeNa_10g0019080.01,OsKeNa_10g0019080.02,OsKeNa_10g0019080.05,OsKeNa_10g0019080.04 | All |
| RI | Chr10 | 23880306 | 23880683 | - | OsKeNa_10g0019080.01 | OsKeNa_10g0019080.01,OsKeNa_10g0019080.04 | All |
| RI | Chr10 | 23880306 | 23880683 | - | OsKeNa_10g0019080.01 | OsKeNa_10g0019080.01,OsKeNa_10g0019080.03 | All |
| RI | Chr10 | 23878539 | 23879514 | - | OsKeNa_10g0019080.03 | OsKeNa_10g0019080.01,OsKeNa_10g0019080.03,OsKeNa_10g0019080.05,OsKeNa_10g0019080.04 | All |
| RI | Chr10 | 23880439 | 23880683 | - | OsKeNa_10g0019080.03 | OsKeNa_10g0019080.03,OsKeNa_10g0019080.02,OsKeNa_10g0019080.05 | All |
| RI | Chr10 | 23880306 | 23880497 | - | OsKeNa_10g0019080.04 | OsKeNa_10g0019080.02,OsKeNa_10g0019080.05,OsKeNa_10g0019080.04 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.423877 | 13.394195 | 10.803583 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0542200 | RBH | 7.689755 | 4.470208 | 21.655838 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g39620 | RBH | 4.859303 | 2.639358 | 4.948843 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0542200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0018710 | RBH | 1.784623 | 50.797359 | 19.581312 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0002470 | RBH | 0.205735 | 2.927120 | 4.497002 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0018490 | RBH | 4.497925 | 53.682964 | 32.128639 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0019040 | RBH | 0.564100 | 1.662909 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0018780 | RBH | 21.894032 | 38.263081 | 64.872375 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0349300 | RBH | 21.3113925 | 58.702555 | 63.5819 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0018640 | RBH | 0.938909 | 3.541577 | 5.669812 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0374600 | RBH | 27.7844075 | 55.9359705 | 39.6643315 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0018390 | RBH | 0.852657 | 0.759636 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0018330 | RBH | 3.728453 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0018850 | RBH | 17.110117 | 55.190075 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0018440 | RBH | 2.478631 | 0.0 | 5.511220 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0018950 | RBH | 1.442191 | 26.823128 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G018720 | RBH | 2.513573 | 22.278406 | 12.351580 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0018790 | RBH | 5.883587 | 62.497589 | 25.054888 |
