Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_10g0015980 | OGI:10048420 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr10:21377040-21377584 | ||||||||
| Gene Symbol | Rf4, Rf-4, PPR782a, PPR9, PPR3, PPR458, PPR7, PPR4, RF1, Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6 | ||||||||||
| DNA seq | TTATTGGCTTCTCTCCTCATCACACAGTCCCTTGAGAAGAATGCTGTAGGAGAAGACATTTGGTATGCAACCGAGCTCAGCCATTCTGCGGAGCACTATGTCCAATGCATCGTTCGTCCTCTTCTCGGCGCATAGGCCCTTTAACAGAGTATTGATGGTGATGGCGTTCACCCTAAATCCCTTCTTAACGACATTGCCGAACGCCGCGAAACCAACACGTCCAATCGGCCCGCGCGGCAGCAGCAGGAGATGAGGATGTTATGGGTGCACAAGTCGGGAGCCACTACCTTCTTGGCGCCGGACCGGGCCATGCGGTTGTAGCAGGCCATGGCGGCCGCGGGGCTGTCGCGCGCGACGGCGGTGAGCGCGCGGTTCAAGCCGTAGATCGAGGCGCCCCTGCCTCGACGGAGCAATTCGTCAAACACGTGGCGTGCGTCCTCGGCGCCACTGCCACCCGCGCGGCCTCCTCGCCCTTCGGTCGCGTACTCCGAGCGGGGAGCGCCGGTGGCGCGTGGCTGGGAGAGAGCGGGGACGCGGCGTGACAT
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| CDS seq | ATGTCACGCCGCGTCCCCGCTCTCTCCCAGCCACGCGCCACCGGCGCTCCCCGCTCGGAGTACGCGACCGAAGGGCGAGGAGGCCGCGCGGGTGGCAGTGGCGCCGAGGACGCACGCCACGTGTTTGACGAATTGCTCCGTCGAGGCAGGGGCGCCTCGATCTACGGCTTGAACCGCGCGCTCACCGCCGTCGCGCGCGACAGCCCCGCGGCCGCCATGGCCTGCTACAACCGCATGGCCCGGTCCGGCGCCAAGAAGGTAGTGGCTCCCGACTTGTGCACCCATAACATCCTCATCTCCTGCTGCTGCCGCGCGGGCCGATTGGACGTGTTGGGATTTAGGGTGAACGCCATCACCATCAATACTCTGTTAAAGGGCCTATGCGCCGAGAAGAGGACGAACGATGCATTGGACATAGTGCTCCGCAGAATGGCTGAGCTCGGTTGCATACCAAATGTCTTCTCCTACAGCATTCTTCTCAAGGGACTGTGTGATGAGGAGAGAAGCCAATAA
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| Protein seq | MSRRVPALSQPRATGAPRSEYATEGRGGRAGGSGAEDARHVFDELLRRGRGASIYGLNRALTAVARDSPAAAMACYNRMARSGAKKVVAPDLCTHNILISCCCRAGRLDVLGFRVNAITINTLLKGLCAEKRTNDALDIVLRRMAELGCIPNVFSYSILLKGLCDEERSQ |
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| Function | Protein Rf1, mitochondrial [UniProtKB/Swiss-Prot:Q76C99] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0015980 | OsLima_10g0015980.01 | Chr10 | 21377040 | 21377584 | - | NAM | ||
| CDS seq | ATGTCACGCCGCGTCCCCGCTCTCTCCCAGCCACGCGCCACCGGCGCTCCCCGCTCGGAGTACGCGACCGAAGGGCGAGGAGGCCGCGCGGGTGGCAGTGGCGCCGAGGACGCACGCCACGTGTTTGACGAATTGCTCCGTCGAGGCAGGGGCGCCTCGATCTACGGCTTGAACCGCGCGCTCACCGCCGTCGCGCGCGACAGCCCCGCGGCCGCCATGGCCTGCTACAACCGCATGGCCCGGTCCGGCGCCAAGAAGGTAGTGGCTCCCGACTTGTGCACCCATAACATCCTCATCTCCTGCTGCTGCCGCGCGGGCCGATTGGACGTGTTGGGATTTAGGGTGAACGCCATCACCATCAATACTCTGTTAAAGGGCCTATGCGCCGAGAAGAGGACGAACGATGCATTGGACATAGTGCTCCGCAGAATGGCTGAGCTCGGTTGCATACCAAATGTCTTCTCCTACAGCATTCTTCTCAAGGGACTGTGTGATGAGGAGAGAAGCCAATAA
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| Protein seq | MSRRVPALSQPRATGAPRSEYATEGRGGRAGGSGAEDARHVFDELLRRGRGASIYGLNRALTAVARDSPAAAMACYNRMARSGAKKVVAPDLCTHNILISCCCRAGRLDVLGFRVNAITINTLLKGLCAEKRTNDALDIVLRRMAELGCIPNVFSYSILLKGLCDEERSQ |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0497432 | SBH | 1.063035 | 0.533988 | 2.623040 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g35440 | SBH | 0.438520 | 0.328626 | 0.617832 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0497432 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0016310 | RBH | 0.000000 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0016630 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0016010 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0016550 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0016320 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0311300 | SBH | 0.0425095 | 0.435917 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0015930 | RBH | 0.037830 | 0.006792 | 0.266487 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0336700 | SBH | 14.8875525 | 14.265312 | 27.1701235 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0015700 | SBH | 0.051787 | 0.129545 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0015860 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0016380 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0016090 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0016510 | RBH | 0.171016 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G015840 | SBH | 0.387500 | 0.839234 | 1.622123 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0016300 | RBH | 0.0 | 0.0 | 0.0 |
