Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_10g0009370 | OGI:10044000 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr10:15147415-15153485 | ||||||||
| Gene Symbol | RLCK298, OsRLCK298, PTK17, OsPTK17 | ||||||||||
| DNA seq | aatggagaattttctataTtttaaattgattgcaaggattggagaatggcatgtttgtacatatgctccacacaaattattgattcatttatttactctcgggtggtgccatgtacacaaatggctctacaatgccatcatccatggccagaagtggttccagggcctccacaaccgctgacatccggggtcgagacttagggctaacactcaagcactgatacgctatggccgcagccttttgtacggctcgagtcgagtactgcccgttcaagcttttgtcgatgacacggttcagccggcgagagtcatgtaggcatggccgagcccattccactaggttttgctctcgcagtggtctcttcttatccacagctttccgtccggttagtagctccagcagcaccacaccatagctatacacatcgctctttatcgttagatgacctgcaataacatgaagtaatattaatagccaattagttgaaacatgaaaggtatatattttttatttctttagggtacatgaaaggtatattatgttaaacttcgccactactcgtttacaaaactagctagctaggtagactatatgtgtgacaattttagtaccagtcatgatgtattctggtgcggcatagccctgtgtgcccatcactctagtggagacatgtgtctcgtcttcttgaggcccatctttggccagtccgaaatccgaaagttttgcttcgtagtcctaccaataattaaacaatgtcagtcacaaaatgtcatatgacaacagctaccaggatgggagaagctctccaatatttcctttccatttgataaattgcagcgttttaatgtgtgctccactcatttataattcatatatacagatagagacaaattgttactagcttaatacacatcctctgctacggatatatattgcttagaacaaattagttataaggttttctttagaacaatgcatccttattggtatttttgcatgataaacttgtttttatggatgaaataagatagataaaaacaatatatataagtactattttgaaatattaaaaggatgttggataaaaaccaatgtataaataagctcatatagatagatatgtataccgagttgagtaggatgttggaggtcttgaagtcgcgatagatgacgggcttggcagcttcatggaggaaggccaaacctctggccgctccaatggcgatcttcaagcgtgttgaccacggcagcgacgcagagtactctgcagtttcaatttgcacaatcgatcagttcatgcattatttcatctacaactaattatgacccatcgacaaatcagatgatgaaagcaaaaggcggcaatgcaaattgttaggagcagccaattaagtagtaagtatgtgcatctccactgaaattaattcaatgcaagctttgaatattttttgttgtcttgataccaacattaaagaagattaattgctagctaccagaaataactgagagaatgaattgtcttccattctatcttgtgaagttgacaacattgattaccacattagaatgatatatataggcttccatggtaatgcagatgatgcactattttttttattatgtagaaaatacacaagcacacaaaagcacctatatgaatgcagctcttaacacatggtcaagagataaagaccaagagtaaattcgtttatactattatcgttatcgaaatttaaactctggtagatggagttatacacccataaagccgtcactccacaccagcattttgctttccctatctgcactttttttaTCTtttatgatgagatgaacattttgtttgttgtcacatgcatgattggctacttttgactTGtgtggcctatataagtgccttatccaaattacatgacttgtaatcattgtggcctacttggattctccaatttgataaactatcaaagcaattagaaatttatgcttatttttccacgcttcaattcgatCcctttatcaactaacaatgggaatgtgtgttgtcactttaatttgagctgatgaccaaaacgaattttaggccacacaccaaattaaacgataagaaattaagaaattaaattgtgtcatgcttgcatcacataaacgaggccatgatattattttaccatgtgtacatgctcgtgagaacgttgatgtaaacatgtaacagatttgacactaacatgtgtaaaaccctctcaaaagcagtatgaaccatggaaaaattggagccacagtgtggtggaatatgcaaaaggatgacttctcttgattaataagttgcatgcacggctggagttGGggtgttattttgagggtctaagttggaatacttctaagcacaatgtaaacgggaatggtcaaattaacaatacttcaaacagaaatgattacttcaacggaaattcgccagtacatataaatttctaattggaaatggaaatggccaaattaacacaatctaaaatttggatgacttgtaatcatttgcttacttcaactatatgtactggcaaatgaagagctaattacctacggtttgattatgatctggtataccttgggagttcatccaatatgtatatacacaaatatttttatgctaaagtagaaaaagtttgattcatcattcctgtaaaacaaatctacaatttcttttgtgatgtgttgtatgctctctcatactaatttttcgtagttccattaaccagttcatatttatcagaacaataaaaaatatttaaaagaataatatcatgccctctcattagagatgtggttgggtagttaatagagagggatgttgaatgtggctatttataagtgtgccatcattttgttataagtcgtaacgtttattagtgataacaaatgatttggagggataacttttatatatgttcttagcgacttaaaatcaatactgaaaaataaaataggataaaaatagtaaatcaattctaaaattaagttttaaaatttaaacttgtgacgtggttgataataagctgaagatgaaataatagaaggcttaattttggtttaaacaattaaatgcctaaaacatgtcttgaattaaaatttctttgtttatttctgggattttggttgaaagaaaaaaaggaagcataagatggaatttgccgtacttttgaagaggtgcttctccaagctgcccctagccatgaactcgtagacgagaagtctgtgctcatcctcgtagcagtatccgatcagcttgacgaggtgatgatgtctcaattgcccaagaaatatgacttcagcctgCccaaattttacataatataatccattaattagttcaacacatgcccatattccatcagtataattaagttatgtcagaatttgaccaaaacctgtaaccactcttaaaaatactaattgtttgaccaaacaaatagcatattgcagtatatatagttagttaggtggctgatcgacattatccttgcctccgggtactaaaggattttaataggagattaagtatgaactaatgatcatgagaggaagacgtggcgactttctgaagggatcacagctaactaagtagctggcatgcactaataattattcaatttgctttggagtaggatttaccacagcattgacaggattcttaTGtgtgatccgatcttgtttgttgtcaaatgaagtactaaaatggacgttgcaactgtttgtgtgtgtgctcaatttgtactgaactgatcgaaatcatcgtctataaaagttcaagacgaattaattctattatgtgttttcttaaaagggaaccttgttaaaaatatacaaacgacttctttaaagacaaaataaaatcattgcactaaatcatatatattccctcccatgagtgtgaagtttcataacgtacgtacgtacgtagttaacacatttaaactttcgaccaacaacttatatttgaatattttggttcaacttaattttaagaaatggtatatagctagatttatcttcaaattaaattagtttcatgatattataactttgctaaacaaatttactagttatcaataatcaaactagtgtattcgacagtgtcgctatccaaaatatcattattttctcgtatttcttttttctgttttgactggagccagtaaatgcatgctagataaactggccttcaataatatgaaaagagattgactactgcttaatttggacttttgcagtttggccttttcttttcaattaatgcagTttcccgaagttaaattaaaatatgcttaaatatgaagtcagggttaatagcacagtcaacatcatggcccttgaaatccggtttacgaaagaaactgaagtgtcatactgtacggtatgcacgggcttaacacagcttgataattagtcccaactaattatcacaaacgttacccctattaatttcggtgaaacattaacgactaactatagtaatggggctatatatgctaactcaaatactgcgtgttgattagtaaactatcgttaccaagtcatgcgttcaaaggcaaattaaacgacatgtgtagagtggacaatttccaaattaagaaattttgtagaaaaaggtgcaattcccacaaaaattgtccttccaaccatagaattccgtattgactttgcacacaatatggaaatgatatgaaaatatttacctaacaatcagtcacagataaaatatacatactaatcgattgaatttcattttgttgtgcgtcagccattatctcactcttgagtcattctttgctctcaccgtcaactaaaatttgctttaaaattagtgcaaatagaagcacgtcctcaagaacaacacccactgatcagtaattagggagttctaatcttagttctagggacaattagctacaatactatgactactaattaattaattacttgacttgaaatcgtactgataatctcagtgatcttaattagtactatatatatgatgagatagtctcagtgagacttgcttaatttacttcatttatagtaacaaaagacttgatcattactttgataagataatctctctcagtgaaactttatacttcatttctcacaagaagacttaattaattgcattgataagataatctcagtgaggctttgattagtaggtcagtccccacttaagacactagatatacttttcataagctccacatcattaagaaactagtactaaacactactcttttaatgtaaacatcacttttccatacttaaatttaatgctacttatctcacatgatgtcttggttttcttctcttttctcatttattcacttgttacattattttttattttaggtggcagcttatttaatattatggataccatccatcattagattgagaatggccgtatagtaatcaatcaatctaactaattcgccgttaattaatcaattaatcaccgggtaattaataactggatgagaaatgagattaattagtgagagaggaggagttaaactaattaccagccattccttgtggccctgggagccctcgaggtcgagcagcttgacggcgacggcctgcgcgcgcacgccgggcttgagccgctcgtcgacgtaccccttgtacaccggcccgaaccccccctcgcccacgaagttgctcaccgagaagtCccgcgtcgCcctcctcagctcctccaccgtgaacgcctccaccccgctccccgccagcgactgcgacaggtcctccggcgacggcatcaccgccgccgccaccccgtcgttgctgttgcacgacgacggccgcgccggcaGCggcgtCCccgggttcttggccgccgccgagccgccgtcgctgtgggaggaggtgaagcagccgagcccgaacagcgagctccacgacggcgacgacgacgtcgtcgtcttcttccccatgattgccaaggtgtggaatggttgggaggaggatcggggggagttaatttatagggagcacgtcgcggtgttgggaattGGgggatgat
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| CDS seq | atggggaagaagacgacgacgtcgtcgtcgccgtcgtggagctcgctgttcgggctcggctgcttcacctcctcccacagcgacggcggctcggcggcggccaagaacccggGGacgccGCtgccggcgcggccgtcgtcgtgcaacagcaacgacggggtggcggcggcggtgatgccgtcgccggaggacctgtcgcagtcgctggcggggagcggggtggaggcgttcacggtggaggagctgaggaggGcgacgcggGacttctcggtgagcaacttcgtgggcgagggggggttcgggccggtgtacaaggggtacgtcgacgagcggctcaagcccggcgtgcgcgcgcaggccgtcgccgtcaagctgctcgacctcgagggctcccagggccacaaggaatggctggctgaagtcatatttcttgggcaattgagacatcatcacctcgtcaagctgatcggatactgctacgaggatgagcacagacttctcgtctacgagttcatggctaggggcagcttggagaagcacctcttcaaaaagtactctgcgtcgctgccgtggtcaacacgcttgaagatcgccattggagcggccagaggtttggccttcctccatgaagctgccaagcccgtcatctatcgcgacttcaagacctccaacatcctactcaactcggactacgaagcaaaactttcggatttcggactggccaaagatgggcctcaagaagacgagacacatgtctccactagagtgatgggcacacagggctatgccgcaccagaatacatcatgactggtcatctaacgataaagagcgatgtgtatagctatggtgtggtgctgctggagctactaaccggacggaaagctgtggataagaagagaccactgcgagagcaaaacctagtggaatgggctcggccatgcctacatgactctcgccggctgaaccgtgtcatcgacaaaagcttgaacgggcagtactcgactcgagccgtacaaaaggctgcggccatagcgtatcagtgcttgagtgttagccctaagtctcgaccccggatgtcagcggttgtggaggccctggaaccacttctggccatggatgatggcattgtagagccatttgtgtacatggcaccacccgagagtaaataa
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| Protein seq | MGKKTTTSSSPSWSSLFGLGCFTSSHSDGGSAAAKNPGTPLPARPSSCNSNDGVAAAVMPSPEDLSQSLAGSGVEAFTVEELRRATRDFSVSNFVGEGGFGPVYKGYVDERLKPGVRAQAVAVKLLDLEGSQGHKEWLAEVIFLGQLRHHHLVKLIGYCYEDEHRLLVYEFMARGSLEKHLFKKYSASLPWSTRLKIAIGAARGLAFLHEAAKPVIYRDFKTSNILLNSDYEAKLSDFGLAKDGPQEDETHVSTRVMGTQGYAAPEYIMTGHLTIKSDVYSYGVVLLELLTGRKAVDKKRPLREQNLVEWARPCLHDSRRLNRVIDKSLNGQYSTRAVQKAAAIAYQCLSVSPKSRPRMSAVVEALEPLLAMDDGIVEPFVYMAPPESK |
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| Function | Serine/threonine-protein kinase RIPK [UniProtKB/Swiss-Prot:Q9ZUF4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0009370 | OsLima_10g0009370.01 | Chr10 | 15147415 | 15153485 | - | NAM | ||
| CDS seq | atggggaagaagacgacgacgtcgtcgtcgccgtcgtggagctcgctgttcgggctcggctgcttcacctcctcccacagcgacggcggctcggcggcggccaagaacccggGGacgccGCtgccggcgcggccgtcgtcgtgcaacagcaacgacggggtggcggcggcggtgatgccgtcgccggaggacctgtcgcagtcgctggcggggagcggggtggaggcgttcacggtggaggagctgaggaggGcgacgcggGacttctcggtgagcaacttcgtgggcgagggggggttcgggccggtgtacaaggggtacgtcgacgagcggctcaagcccggcgtgcgcgcgcaggccgtcgccgtcaagctgctcgacctcgagggctcccagggccacaaggaatggctggctgaagtcatatttcttgggcaattgagacatcatcacctcgtcaagctgatcggatactgctacgaggatgagcacagacttctcgtctacgagttcatggctaggggcagcttggagaagcacctcttcaaaaagtactctgcgtcgctgccgtggtcaacacgcttgaagatcgccattggagcggccagaggtttggccttcctccatgaagctgccaagcccgtcatctatcgcgacttcaagacctccaacatcctactcaactcggactacgaagcaaaactttcggatttcggactggccaaagatgggcctcaagaagacgagacacatgtctccactagagtgatgggcacacagggctatgccgcaccagaatacatcatgactggtcatctaacgataaagagcgatgtgtatagctatggtgtggtgctgctggagctactaaccggacggaaagctgtggataagaagagaccactgcgagagcaaaacctagtggaatgggctcggccatgcctacatgactctcgccggctgaaccgtgtcatcgacaaaagcttgaacgggcagtactcgactcgagccgtacaaaaggctgcggccatagcgtatcagtgcttgagtgttagccctaagtctcgaccccggatgtcagcggttgtggaggccctggaaccacttctggccatggatgatggcattgtagagccatttgtgtacatggcaccacccgagagtaaataa
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| Protein seq | MGKKTTTSSSPSWSSLFGLGCFTSSHSDGGSAAAKNPGTPLPARPSSCNSNDGVAAAVMPSPEDLSQSLAGSGVEAFTVEELRRATRDFSVSNFVGEGGFGPVYKGYVDERLKPGVRAQAVAVKLLDLEGSQGHKEWLAEVIFLGQLRHHHLVKLIGYCYEDEHRLLVYEFMARGSLEKHLFKKYSASLPWSTRLKIAIGAARGLAFLHEAAKPVIYRDFKTSNILLNSDYEAKLSDFGLAKDGPQEDETHVSTRVMGTQGYAAPEYIMTGHLTIKSDVYSYGVVLLELLTGRKAVDKKRPLREQNLVEWARPCLHDSRRLNRVIDKSLNGQYSTRAVQKAAAIAYQCLSVSPKSRPRMSAVVEALEPLLAMDDGIVEPFVYMAPPESK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0395000 | RBH | 0.346795 | 0.348582 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g25550 | RBH | 0.222361 | 0.222293 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0395000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0009510 | RBH | 0.282072 | 5.624822 | 0.463641 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0009610 | RBH | 0.0 | 22.423100 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0009420 | RBH | 0.0 | 23.402018 | 0.491535 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0009820 | RBH | 0.0 | 0.254481 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0009570 | RBH | 1.554322 | 13.199712 | 3.338396 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0227600 | RBH | 0.2594725 | 10.4776685 | 0.006079 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0009570 | RBH | 0.057560 | 0.913586 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0246500 | RBH | 2.007573 | 12.265682 | 0.063082 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0005810 | RBH | 0.084665 | 0.471470 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0009320 | RBH | 0.135413 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0009760 | RBH | 0.000000 | 23.112236 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0009360 | RBH | 0.136841 | 0.0 | 0.168076 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0009860 | RBH | 0.0 | 12.305744 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G009670 | RBH | 0.174462 | 0.989718 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0009640 | RBH | 0.506655 | 26.936546 | 1.152993 |
